Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G36410 194 / 3e-63 Family of unknown function (DUF662) (.1), Family of unknown function (DUF662) (.2), Family of unknown function (DUF662) (.3) AT3G52920 192 / 1e-62 Family of unknown function (DUF662) (.1), Family of unknown function (DUF662) (.2) AT3G09980 183 / 4e-59 Family of unknown function (DUF662) (.1) AT5G03660 164 / 2e-51 Family of unknown function (DUF662) (.1), Family of unknown function (DUF662) (.2) AT2G27740 151 / 1e-46 Family of unknown function (DUF662) (.1) AT3G52900 128 / 1e-37 Family of unknown function (DUF662) (.1) AT2G36355 108 / 6e-30 Family of unknown function (DUF662) (.1), Family of unknown function (DUF662) (.2), Family of unknown function (DUF662) (.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023876 [exp] 223 / 7e-75 AT2G36410 239 / 9e-82 Family of unknown function (DUF662) (.1), Family of unknown function (DUF662) (.2), Family of unknown function (DUF662) (.3) Lus10027724 [exp] 202 / 2e-66 AT2G36410 237 / 1e-80 Family of unknown function (DUF662) (.1), Family of unknown function (DUF662) (.2), Family of unknown function (DUF662) (.3) Lus10035563 [exp] 201 / 8e-66 AT2G36410 238 / 8e-81 Family of unknown function (DUF662) (.1), Family of unknown function (DUF662) (.2), Family of unknown function (DUF662) (.3) Lus10019529 [exp] 166 / 2e-52 AT2G27740 201 / 9e-67 Family of unknown function (DUF662) (.1) Lus10043372 [exp] 164 / 2e-51 AT2G27740 207 / 6e-69 Family of unknown function (DUF662) (.1) Lus10034160 [exp] 124 / 6e-36 AT3G52900 154 / 2e-48 Family of unknown function (DUF662) (.1) Lus10043423 [exp] 120 / 1e-33 AT3G52900 150 / 4e-46 Family of unknown function (DUF662) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G115400 [exp] 194 / 2e-63 AT3G09980 202 / 3e-67 Family of unknown function (DUF662) (.1) Potri.009G147500 [exp] 157 / 1e-48 AT2G27740 177 / 4e-57 Family of unknown function (DUF662) (.1) Potri.004G186900 [exp] 150 / 3e-46 AT2G27740 177 / 3e-57 Family of unknown function (DUF662) (.1) Potri.010G235600 [exp] 146 / 8e-45 AT3G09980 128 / 3e-38 Family of unknown function (DUF662) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04949 [flax] [poplar] Transcrip_act Transcriptional activator
Representative CDS sequence Show only first row Show all	>Lus10014379 pacid=23143675 polypeptide=Lus10014379 locus=Lus10014379.g ID=Lus10014379.BGIv1.0 annot-version=v1.0 ATGGAGCCTCAACCAACCCAAGTACCCCAGCAGCAGCCTTTGAATCAGCTCATGGTTCAGAACTCTGGTGGAAGCTTGAGCTTCAGCTCCCAAATGTCCA AGGAAGATGAGGAGATGTCCAGGTCTGCTCTCTCCACTTTCAGGGCTAAAGAAGAAGAGATTGAGAAGAGGAAGATGGAAGTTAGGGAGAGGGTTCAGGC TCAGCTTGGCCGTGTTGAGGAAGAGACTAAGCGTTTAGCCATGATTCGTGAGGAACTTGAAGGTTTGGCAGATCCCATGAGGAAAGAGGTATCCTCAGTG AGGAAGAAGATTGATTCAGTGAATAAGGAATTGAAGCCTCTAGGACACAGTGTTCAGAAGAAGGAGAAAGAGTACAAGGATGCCCTTGAGGCTTTTAATG ACAAGAACAAGGAGAAAGTACAGCTCATAACCAAGCTAATGGAGGTTCACGAGATCTCCTCCACTCTCTTCCTCTTTTTTTCCGACGGTTCCACCGCTTC TTCAGCTCCTATCGCCCCTTCCTTTTCCGCTTGCAGGGAGTGCGGATTCAAGGCGACTCAGGAGCTGCAAGCTCGGCAGTCCAACCACACCAACCGGTTC TTAGCCTTTGGAACTCATTGGTCAGGTTAG
AA sequence Show only first row Show all	>Lus10014379 pacid=23143675 polypeptide=Lus10014379 locus=Lus10014379.g ID=Lus10014379.BGIv1.0 annot-version=v1.0 MEPQPTQVPQQQPLNQLMVQNSGGSLSFSSQMSKEDEEMSRSALSTFRAKEEEIEKRKMEVRERVQAQLGRVEEETKRLAMIREELEGLADPMRKEVSSV RKKIDSVNKELKPLGHSVQKKEKEYKDALEAFNDKNKEKVQLITKLMEVHEISSTLFLFFSDGSTASSAPIAPSFSACRECGFKATQELQARQSNHTNRF LAFGTHWSG

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G36410			Family of unknown function (DU...		Lus10014379 [exp]	0	1
AT5G50740			Heavy metal transport/detoxifi...		Lus10038785 [exp]	1.7	0.8796
AT1G80230			Rubredoxin-like superfamily pr...		Lus10025745 [exp]	3.5	0.7848
AT3G17020			Adenine nucleotide alpha hydro...		Lus10016900 [exp]	4.6	0.8292
					Lus10022888 [exp]	4.9	0.7655
AT5G38900			Thioredoxin superfamily protei...		Lus10034369 [exp]	5.1	0.8293
AT1G10940		ASK1, SNRK2-4, ...	SNF1-related protein kinase 2....		Lus10019225 [exp]	6.0	0.8039
AT1G50670			OTU-like cysteine protease fam...		Lus10021522 [exp]	8.4	0.8016
AT5G02800		CDL1	CDG1-like 1, Protein kinase su...		Lus10014019 [exp]	12.4	0.7961
AT2G02410			unknown protein		Lus10026272 [exp]	15.8	0.7858
AT2G22420			Peroxidase superfamily protein...		Lus10025737 [exp]	16.9	0.7721

Compare expression of checked genes

Lus10014379 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.