Plant FIBer expression Database

Lus10014381 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT2G36400 91 / 2e-22 GRF ATGRF3 growth-regulating factor 3 (.1)
AT3G52910 79 / 7e-18 GRF ATGRF4 growth-regulating factor 4 (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10023877
[exp]
206 / 3e-67 AT2G36400 109 / 5e-27 growth-regulating factor 3 (.1)
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.006G115200
[exp]
89 / 2e-21 AT3G52910 244 / 3e-77 growth-regulating factor 4 (.1)
Potri.013G077500
[exp]
41 / 0.0001 AT3G13960 160 / 1e-45 growth-regulating factor 5 (.1)
PFAM info
Representative CDS sequence
>Lus10014381 pacid=23143733 polypeptide=Lus10014381 locus=Lus10014381.g ID=Lus10014381.BGIv1.0 annot-version=v1.0
ATGTTACTTGTGGACAGAACCGAGACTTACCTTCAAAGTGAAGCTACCGACAACAGATCGGATGGCCATGTCTTGAGGCATTTCTTCGACGACTGGCCAC
GTGACTCGGAGGACGGGGCCGGAGCCAATTCGAATTCGATGAACTCTACAACCTACCTGTCTATATCGACGCCGGCGGCGTCGGATGTATCGTTGAAGCT
CGCAACGGGGAACGACGGCGGGGAGGAGGAAGGCGGTGGTGGGTCTATAGGAGGAGGTTCGGATAGGGACCAGGCCCAGATGAACTGGGCCGCTGGTTGG
GCCGCAAATCAGGTTGCTTCAATGGGCGGGCCGCTTGCTGAGGCGTTGAGGTCTTCTTCCAGTACGAATCCTTTTCCCGCCAGCGTCCTGCACCAGGTGC
CACGTGGCGTGCTGCTGAAACCTACTACGTTAGCGCTTGAATAA
AA sequence
>Lus10014381 pacid=23143733 polypeptide=Lus10014381 locus=Lus10014381.g ID=Lus10014381.BGIv1.0 annot-version=v1.0
MLLVDRTETYLQSEATDNRSDGHVLRHFFDDWPRDSEDGAGANSNSMNSTTYLSISTPAASDVSLKLATGNDGGEEEGGGGSIGGGSDRDQAQMNWAAGW
AANQVASMGGPLAEALRSSSSTNPFPASVLHQVPRGVLLKPTTLALE

DESeq2's median of ratios [FLAX]

Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT2G36400 GRF ATGRF3 growth-regulating factor 3 (.1... Lus10014381
[exp]
0 1
AT2G36400 GRF ATGRF3 growth-regulating factor 3 (.1... Lus10014380
[exp]
1.0 0.9953
AT4G11080 3xHMG-box1 3xHigh Mobility Group-box1, HM... Lus10033951
[exp]
2.6 0.9548
AT1G14900 HMGA high mobility group A (.1) Lus10002284
[exp]
3.7 0.9678
AT2G01630 O-Glycosyl hydrolases family 1... Lus10013465
[exp]
4.0 0.9612
AT5G49665 Zinc finger (C3HC4-type RING f... Lus10028225
[exp]
4.1 0.9260
AT1G14900 HMGA high mobility group A (.1) Lus10004056
[exp]
4.2 0.9657
AT1G63470 AT-hook AT hook motif DNA-binding fami... Lus10008535
[exp]
4.9 0.9431
AT1G79060 unknown protein Lus10031218
[exp]
4.9 0.9512
AT3G13960 GRF ATGRF5 growth-regulating factor 5 (.1... Lus10020352
[exp]
5.0 0.9600
AT2G21060 ATCSP4, ATGRP2B COLD SHOCK DOMAIN PROTEIN 4, g... Lus10034487
[exp]
6.0 0.9468

Lus10014381 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.