Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G36390 1251 / 0 SBE2.1, BE3 BRANCHING ENZYME 3, starch branching enzyme 2.1 (.1) AT5G03650 1251 / 0 SBE2.2 starch branching enzyme 2.2 (.1) AT3G20440 455 / 7e-146 EMB2729, BE1 EMBRYO DEFECTIVE 2729, BRANCHING ENZYME 1, Alpha amylase family protein (.1.2.3) AT2G39930 65 / 2e-10 ATISA1, ISA1 ARABIDOPSIS THALIANA ISOAMYLASE 1, isoamylase 1 (.1) AT4G09020 63 / 9e-10 ATISA3, ISA3 isoamylase 3 (.1) AT1G03310 60 / 6e-09 ATISA2, ISA2, DBE1, BE2 BRANCHING ENZYME 2, ARABIDOPSIS THALIANA ISOAMYLASE 2, debranching enzyme 1 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023878 [exp] 1558 / 0 AT2G36390 1253 / 0.0 BRANCHING ENZYME 3, starch branching enzyme 2.1 (.1) Lus10012264 [exp] 799 / 0 AT2G36390 818 / 0.0 BRANCHING ENZYME 3, starch branching enzyme 2.1 (.1) Lus10016012 [exp] 797 / 0 AT2G36390 818 / 0.0 BRANCHING ENZYME 3, starch branching enzyme 2.1 (.1) Lus10027725 [exp] 649 / 0 AT1G66950 1077 / 0.0 ATP-binding cassette G39, pleiotropic drug resistance 11 (.1) Lus10000912 [exp] 424 / 7e-134 AT3G20440 1315 / 0.0 EMBRYO DEFECTIVE 2729, BRANCHING ENZYME 1, Alpha amylase family protein (.1.2.3) Lus10003674 [exp] 189 / 6e-53 AT3G20440 477 / 7e-163 EMBRYO DEFECTIVE 2729, BRANCHING ENZYME 1, Alpha amylase family protein (.1.2.3) Lus10003675 [exp] 178 / 1e-47 AT3G20440 766 / 0.0 EMBRYO DEFECTIVE 2729, BRANCHING ENZYME 1, Alpha amylase family protein (.1.2.3) Lus10021586 [exp] 66 / 1e-10 AT2G39930 1211 / 0.0 ARABIDOPSIS THALIANA ISOAMYLASE 1, isoamylase 1 (.1) Lus10017150 [exp] 66 / 1e-10 AT2G39930 723 / 0.0 ARABIDOPSIS THALIANA ISOAMYLASE 1, isoamylase 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G115100 [exp] 1341 / 0 AT5G03650 1303 / 0.0 starch branching enzyme 2.2 (.1) Potri.005G251000 [exp] 833 / 0 AT5G03650 828 / 0.0 starch branching enzyme 2.2 (.1) Potri.001G359200 [exp] 462 / 2e-148 AT3G20440 1352 / 0.0 EMBRYO DEFECTIVE 2729, BRANCHING ENZYME 1, Alpha amylase family protein (.1.2.3) Potri.006G070800 [exp] 71 / 4e-12 AT2G39930 1212 / 0.0 ARABIDOPSIS THALIANA ISOAMYLASE 1, isoamylase 1 (.1) Potri.018G132500 [exp] 67 / 6e-11 AT2G39930 1217 / 0.0 ARABIDOPSIS THALIANA ISOAMYLASE 1, isoamylase 1 (.1) Potri.002G100900 [exp] 56 / 1e-07 AT4G09020 1111 / 0.0 isoamylase 3 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0058 [flax] [poplar] Glyco_hydro_tim PF00128 [flax] [poplar] Alpha-amylase Alpha amylase, catalytic domain CL0369 [flax] [poplar] GHD PF02806 [flax] [poplar] Alpha-amylase_C Alpha amylase, C-terminal all-beta domain CL0369 [flax] [poplar] GHD PF02922 [flax] [poplar] CBM_48 Carbohydrate-binding module 48 (Isoamylase N-terminal domain)
Representative CDS sequence Show only first row Show all	>Lus10014382 pacid=23143750 polypeptide=Lus10014382 locus=Lus10014382.g ID=Lus10014382.BGIv1.0 annot-version=v1.0 ATGGTGTACTACGCGATATCAGGAATCCGCTTGCCTTGCGTTCCTTCAGTCCATCACAACTCTCTCAGTGCATCACAACTCTCAATCTCACTTTTCCTTC TTCAATCTCGACCGCCGCACTTCCTCCGCCACCACTTCGCTGTCTTTCTCCTCCAAGAAGCTCCCGCTCTCTTGTACTCCCTCTGTCCCCCTCAACTGCG GGGAGTGATATTTTGCTGTTGGACGGTGGTATCGTTTGAATGGGAGTTTGTTGCGAATGTGCTTTGGAAGGTGCTAAACCGGTGCTTATGTGTAAGGAAG ATCGGTGCTGCAAGCTCTTCAAATGATCCCGAAGCCTCTAGTTTAACGGCAAGTACGCCTGAGAAAGTTCTTGTTCCTGGAGCTGGAGCTAAACCTTCTT CCGCCATTGATGTTCTTGTTCCTGATGTGAACCCTTCTTCCTCAGCAGATCAGTTAGAGACTCCAGGCATTCTTTCAGAGGATTCCAAGGCCCTTTACGA GATACCAGAAAGTTCTACGATGATTGATGGCAAGAATAATAGGATCCTAGGGAAACAAGGGGAAAATGCTGTTTTTCCGGATAGAAGATTTACGATTGGG GAAAGAAGCATCCCTCCACCTGGTGCTGGTCAGAGGATATATGACATTGATCCAATGTTGTCAGGTTTTCGCCAGCATCTTGATTACAGATATTCACAGT ACAAAAGAATTCGTGCAGAAATTGATAAGTTTGAAGGTGGTTTGGAGGAGTTTTCACGTGGATATGAAAAGTTCGGATTTTTACGCAGTGAAACAGGGAT AACATATAGAGAGTGGGCGCCTGGAGCAACAAGGGCAGCATTGATAGGAGATTTTAACAATTGGAATCCCAATGCAGATGTCATGACTAGGAATGAGTTT GGTGTCTGGGAGATCTTTTTGCCCAACAATGCTGATGGTTCATCGCCAATACCCCATGGTTCACGGGTAAAGATACGCATGGACACTCCATCTGGCTTGA AAGATTCGATCCCTGCTTGGATTAAGTATGCTGTACAAGCTCCAGGTGAAATCCCGTATAATGGAATCTACTATGACCCACCAGAAGAGGAGAAGTATGT TTTCAAGCATCCTCAACCAGATAAACCAAAATCACTGAGGATTTACGAGTCACATGTTGGCATGAGCAGTACGGAACCAAAAATCAACTCATATACTAGC TTTAGAGATGATGTATTGCCGCGAATCAAGAAGCTTGGCTATAATGCTGTCCAGATCATGGCTATTCAGGAACACTCATATTATGCCAGCTTTGGCTACC ACGTCACAAATTTTTTTGCACCTAGCAGTCGTTTTGGGACACCTGATGACTTGAAGTCTCTGATAGATAAAGCTCACGAGCTAGGTCTAGTTGTTCTCAT GGATATTGTTCACAGCCATTCATCGAATAATACATTGGATGGGCTGAACATGTTTGATGGGACTGATTCCCATTACTTTCACTCTGGAGCACGGGGTCAT CATATGATGTGGGACTCTCGCCTTTTCAACTATGGAAGCTGGGAGGTTGTAAGATACCTTCTTTCAAACGCAAGATGGTGGCTGGATGAGTATAAATTTG ATGGGTTCAGATTTGATGGTGTTACTTCAATGATGTACACTCATCATGGATTGCAGATGACCTTTACAGGAAACTACAATGAATACTTTGGATTTGCAAC TGATGTAGATGCCGTTGTTTATCTGATGCTTGTTAATGACCTGATTCATGGTCTTTTCCCTGAGGCTATCACCATTGGCGAAGATGTTAGTGGAATGCCT ACGTTTTGCATTCCTGTCCAAGATGGTGGAGTGGGATTTGATTACCGTCTTCACATGGCCATTGCTGATAAATGGATTGAGCTTCTAAAGAAAAGAGATG AAGACTGGAGAATGGGTGACATTGTCCACACGTTGACTAACAGAAGGTGGTTGGAGAATTGTGTATGCTACGCGGAGAGTCATGATCAAGCTCTTGTCGG CGACAAGACTATTGCCTTCTGGTTGATGGACAAGGATATGTACGACTTCATGGCTCTCGACCGGCCAGCCACTCCTCTTATTGATCGTGGTATAGCATTA CACAAAATGATCAGGCTTATCACTCTGGGACTAGGTGGTGAAGGATATTTGAACTTCATGGGAAATGAATTCGGGCATCCCGAATGGATCGATTTTCCGA GAGGCGATCAGCATCTTCCTAACGGCAAAGTTGTTCCGGGGAACAATAACAGTTTTGATAAATGCCGACGTAGATTTGATCTGGGCGATGCAGAATATCT AAGGTACCATGGTCTGCAAGAATTCGATCGGGCAATGCACCACCTCGAAGGAACCTATGGCTTCATGACTGATATTCACCAGTACATATCTCGGAAAGAC GAAGGGGATAGGGTGATTGTTTTTGAGAGAGGAAACCTTGTGTTCGTCTTCAACTTCCACTGGAACCAAAGCTATTCAGATTACAGAGTTGGGTGCTACA AGTCAGGAAAGTACAAGATTGTTCTGGACTCCGACGACGCTCTCTTTGGTGGTTTCAACAGAATCGATCACAATGCTGAATTCTTCACCTCTGATGATTG GTATGATGACCGTCCTCGGTCTTTCATGGTGTATTCCCCAGCAAGAACAGCAGTCGTTTATGCATTGGTAGAGGATACAACAGAAAAAGCTCCAGCGAAG ACTGAATCTACAGTTGCTTTAGTGAACGACAACCTCAAACCTCCCCCCGCCTCAGATTCCACGCAAAGCTAA
AA sequence Show only first row Show all	>Lus10014382 pacid=23143750 polypeptide=Lus10014382 locus=Lus10014382.g ID=Lus10014382.BGIv1.0 annot-version=v1.0 MVYYAISGIRLPCVPSVHHNSLSASQLSISLFLLQSRPPHFLRHHFAVFLLQEAPALLYSLCPPQLRGVIFCCWTVVSFEWEFVANVLWKVLNRCLCVRK IGAASSSNDPEASSLTASTPEKVLVPGAGAKPSSAIDVLVPDVNPSSSADQLETPGILSEDSKALYEIPESSTMIDGKNNRILGKQGENAVFPDRRFTIG ERSIPPPGAGQRIYDIDPMLSGFRQHLDYRYSQYKRIRAEIDKFEGGLEEFSRGYEKFGFLRSETGITYREWAPGATRAALIGDFNNWNPNADVMTRNEF GVWEIFLPNNADGSSPIPHGSRVKIRMDTPSGLKDSIPAWIKYAVQAPGEIPYNGIYYDPPEEEKYVFKHPQPDKPKSLRIYESHVGMSSTEPKINSYTS FRDDVLPRIKKLGYNAVQIMAIQEHSYYASFGYHVTNFFAPSSRFGTPDDLKSLIDKAHELGLVVLMDIVHSHSSNNTLDGLNMFDGTDSHYFHSGARGH HMMWDSRLFNYGSWEVVRYLLSNARWWLDEYKFDGFRFDGVTSMMYTHHGLQMTFTGNYNEYFGFATDVDAVVYLMLVNDLIHGLFPEAITIGEDVSGMP TFCIPVQDGGVGFDYRLHMAIADKWIELLKKRDEDWRMGDIVHTLTNRRWLENCVCYAESHDQALVGDKTIAFWLMDKDMYDFMALDRPATPLIDRGIAL HKMIRLITLGLGGEGYLNFMGNEFGHPEWIDFPRGDQHLPNGKVVPGNNNSFDKCRRRFDLGDAEYLRYHGLQEFDRAMHHLEGTYGFMTDIHQYISRKD EGDRVIVFERGNLVFVFNFHWNQSYSDYRVGCYKSGKYKIVLDSDDALFGGFNRIDHNAEFFTSDDWYDDRPRSFMVYSPARTAVVYALVEDTTEKAPAK TESTVALVNDNLKPPPASDSTQS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G36390		SBE2.1, BE3	BRANCHING ENZYME 3, starch bra...		Lus10014382 [exp]	0	1
AT3G11560			LETM1-like protein (.1.2.3.4)		Lus10017005 [exp]	1.7	0.9246
AT5G26570		ATGWD3, OK1, PW...	PHOSPHOGLUCAN WATER DIKINASE, ...		Lus10041275 [exp]	1.7	0.9160
AT1G10760		GWD1, GWD, SOP1...	STARCH EXCESS 1, Pyruvate phos...		Lus10029118 [exp]	4.5	0.8991
AT5G04140		GLS1, GLUS, GLU...	FERREDOXIN-DEPENDENT GLUTAMATE...		Lus10010457 [exp]	4.5	0.9024
AT3G15354		SPA3	SPA1-related 3 (.1)		Lus10019476 [exp]	4.5	0.9197
AT3G61700			Plant protein 1589 of unknown ...		Lus10004016 [exp]	5.9	0.8952
AT2G18940			Tetratricopeptide repeat (TPR)...		Lus10020002 [exp]	6.9	0.8978
AT5G26570		ATGWD3, OK1, PW...	PHOSPHOGLUCAN WATER DIKINASE, ...		Lus10037434 [exp]	7.1	0.8925
AT5G05170		IXR1, CEV1, ATH...	ISOXABEN RESISTANT 1, CONSTIT...		Lus10012198 [exp]	7.3	0.8817
AT4G37380			Tetratricopeptide repeat (TPR)...		Lus10024971 [exp]	7.4	0.8893

Compare expression of checked genes

Lus10014382 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.