Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G09970 453 / 6e-162 Calcineurin-like metallo-phosphoesterase superfamily protein (.1) AT3G09960 426 / 3e-151 Calcineurin-like metallo-phosphoesterase superfamily protein (.1) AT2G42500 46 / 7e-06 PP2A-3, PP2A-4 protein phosphatase 2A-3 (.1.2.3) AT1G03445 44 / 8e-05 BSU1 BRI1 SUPPRESSOR 1, Serine/threonine protein phosphatase family protein (.1) AT5G59160 44 / 0.0001 PPO, TOPP2 PROTOPORPHYRINOGEN OXIDASE, type one serine/threonine protein phosphatase 2 (.1.2.3) AT3G19980 43 / 0.0001 STPP, ATFYPP3, EMB2736 SERINE/THREONINE PROTEIN PHOSPHATASE, EMBRYO DEFECTIVE 2736, "flower-specific, phytochrome-associated protein phosphatase 3", flower-specific, phytochrome-associated protein phosphatase 3 (.1) AT4G03080 44 / 0.0002 BSL1 BRI1 suppressor 1 (BSU1)-like 1 (.1) AT5G27840 42 / 0.0002 TOPP8 Calcineurin-like metallo-phosphoesterase superfamily protein (.1.2) AT3G46820 42 / 0.0003 TOPP5 type one serine/threonine protein phosphatase 5 (.1) AT3G58500 41 / 0.0005 PP2A-4, EP7, PP2A-3 protein phosphatase 2A-4 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015192 [exp] 47 / 1e-05 AT3G05580 412 / 1e-144 type one protein phosphatase 9, Calcineurin-like metallo-phosphoesterase superfamily protein (.1) Lus10031489 [exp] 47 / 1e-05 AT3G05580 565 / 0.0 type one protein phosphatase 9, Calcineurin-like metallo-phosphoesterase superfamily protein (.1) Lus10004100 [exp] 46 / 2e-05 AT1G08420 1686 / 0.0 BRI1 suppressor 1 (BSU1)-like 2 (.1), BRI1 suppressor 1 (BSU1)-like 2 (.2) Lus10013357 [exp] 46 / 2e-05 AT1G08420 1713 / 0.0 BRI1 suppressor 1 (BSU1)-like 2 (.1), BRI1 suppressor 1 (BSU1)-like 2 (.2) Lus10020659 [exp] 45 / 3e-05 AT3G05580 562 / 0.0 type one protein phosphatase 9, Calcineurin-like metallo-phosphoesterase superfamily protein (.1) Lus10008369 [exp] 45 / 4e-05 AT1G08420 1747 / 0.0 BRI1 suppressor 1 (BSU1)-like 2 (.1), BRI1 suppressor 1 (BSU1)-like 2 (.2) Lus10029882 [exp] 45 / 5e-05 AT3G05580 555 / 0.0 type one protein phosphatase 9, Calcineurin-like metallo-phosphoesterase superfamily protein (.1) Lus10017361 [exp] 44 / 8e-05 AT1G50370 617 / 0.0 flower- specific, phytochrome-associated protein phosphatase 1, Calcineurin-like metallo-phosphoesterase superfamily protein (.1) Lus10010156 [exp] 44 / 9e-05 AT1G50370 617 / 0.0 flower- specific, phytochrome-associated protein phosphatase 1, Calcineurin-like metallo-phosphoesterase superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G156500 [exp] 468 / 3e-167 AT3G09970 478 / 4e-171 Calcineurin-like metallo-phosphoesterase superfamily protein (.1) Potri.002G156200 [exp] 434 / 7e-154 AT3G09970 467 / 9e-167 Calcineurin-like metallo-phosphoesterase superfamily protein (.1) Potri.009G016900 [exp] 46 / 3e-05 AT2G27210 1588 / 0.0 BRI1 suppressor 1 (BSU1)-like 3 (.1), BRI1 suppressor 1 (BSU1)-like 3 (.2) Potri.001G215700 [exp] 45 / 6e-05 AT2G27210 1626 / 0.0 BRI1 suppressor 1 (BSU1)-like 3 (.1), BRI1 suppressor 1 (BSU1)-like 3 (.2) Potri.008G003200 [exp] 44 / 0.0001 AT1G50370 624 / 0.0 flower- specific, phytochrome-associated protein phosphatase 1, Calcineurin-like metallo-phosphoesterase superfamily protein (.1) Potri.010G254500 [exp] 43 / 0.0001 AT1G50370 617 / 0.0 flower- specific, phytochrome-associated protein phosphatase 1, Calcineurin-like metallo-phosphoesterase superfamily protein (.1) Potri.001G007800 [exp] 43 / 0.0002 AT2G42500 628 / 0.0 protein phosphatase 2A-3 (.1.2.3) Potri.003G217900 [exp] 43 / 0.0002 AT2G42500 627 / 0.0 protein phosphatase 2A-3 (.1.2.3) Potri.005G024100 [exp] 42 / 0.0002 AT5G27840 553 / 0.0 Calcineurin-like metallo-phosphoesterase superfamily protein (.1.2) Potri.014G135800 [exp] 42 / 0.0003 AT4G03080 1441 / 0.0 BRI1 suppressor 1 (BSU1)-like 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0163 [flax] [poplar] Calcineurin PF00149 [flax] [poplar] Metallophos Calcineurin-like phosphoesterase
Representative CDS sequence Show only first row Show all	>Lus10014383 pacid=23143669 polypeptide=Lus10014383 locus=Lus10014383.g ID=Lus10014383.BGIv1.0 annot-version=v1.0 ATGTCGAAACCCAGAACCGTAATCTGCGTGGGCGACATCCACGGCTACATCACCAAGCTCCAAAACCTCTGGACCAATCTCGAAGCCCTAATCGACGACT TCCCCACCGCACTCGTCATCTTCCTCGGCGATTACTGCGACCGTGGCCCGGACACCAAGAAAGTCATCGACTTTCTCATCACTCTCCCTTCCAGGTATCC GAATCAGACCCACGTCTTCCTCGCCGGAAACCACGACCTCGCCTTCTCCGCATTTCTCGGGCTTCTCCCCGGAAACGGCGAGTCGTTTCGGGAAGGATGG AAAGAGTACGAAGCCAATAAGGAAAGAGAAGGTTGGTACGAAGGTGATGGATATGAAAGCATGTATCTTCAAGGGAGAAGATGGGCTGGGAAGATTACTG TCAAGTTCAATGTTGCTAAGGGGACTGAGTACCAGGGTTCTATTTATGATGCTGCTCCTACTTTTGAATCTTACGGCGTTCCGCATGGATCTTCTGACTT GATGAAGGCTGTTCCTGAAAGTCACAGGGAGTTTCTTGCTAATATGGTTTGGGTCCATGAAGAAGAAGCTGTTTGTGTGGAGAAGGAAGGAGAGATCAAG CACTGCAAATTGATTGCGGTCCATGCTGGTTTGGAGAAAGGGAAAGATGTCCAAGAACAGCTGAAACTGTTGAAAGCTAAGGACACCAAAGTGCCAAAGA TTGAGGCTTTAAGTGGGAGGAAGAACGTATGGGACATCCCACAGGAATTAACTGAGAAACCTACAGTTGTAGTCAGTGGCCACCACGGTAAGCTCCACAT TGAAGGCCTTAGGTTGATCATAGATGAAGGCGGTGGACTGGCAGGTAATCCGGTGGCTGCACTCGTACTCCCTTCGATGAAATTGGTCCGAGACACTGAC AGCTTATTGTCGAAATAG
AA sequence Show only first row Show all	>Lus10014383 pacid=23143669 polypeptide=Lus10014383 locus=Lus10014383.g ID=Lus10014383.BGIv1.0 annot-version=v1.0 MSKPRTVICVGDIHGYITKLQNLWTNLEALIDDFPTALVIFLGDYCDRGPDTKKVIDFLITLPSRYPNQTHVFLAGNHDLAFSAFLGLLPGNGESFREGW KEYEANKEREGWYEGDGYESMYLQGRRWAGKITVKFNVAKGTEYQGSIYDAAPTFESYGVPHGSSDLMKAVPESHREFLANMVWVHEEEAVCVEKEGEIK HCKLIAVHAGLEKGKDVQEQLKLLKAKDTKVPKIEALSGRKNVWDIPQELTEKPTVVVSGHHGKLHIEGLRLIIDEGGGLAGNPVAALVLPSMKLVRDTD SLLSK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G09970			Calcineurin-like metallo-phosp...		Lus10014383 [exp]	0	1
AT5G05200			Protein kinase superfamily pro...		Lus10012864 [exp]	3.3	0.9095
AT1G71040		LPR2	Low Phosphate Root2, Cupredoxi...		Lus10032443 [exp]	5.1	0.8936
AT1G05070			Protein of unknown function (D...		Lus10020038 [exp]	5.9	0.8383
AT1G22400		ATUGT85A1, UGT8...	ARABIDOPSIS THALIANA UDP-GLUCO...		Lus10019364 [exp]	7.3	0.8588
AT5G66440			unknown protein		Lus10042306 [exp]	9.6	0.8803
AT5G53970		TAT7	tyrosine aminotransferase 7, T...		Lus10017704 [exp]	11.6	0.8710
AT5G49320			Protein of unknown function (D...		Lus10037723 [exp]	16.5	0.8612
AT1G21680			DPP6 N-terminal domain-like pr...		Lus10028545 [exp]	18.0	0.8430
AT2G40100		LHCB4.3	light harvesting complex photo...		Lus10040191 [exp]	19.1	0.8750
AT2G24580			FAD-dependent oxidoreductase f...		Lus10026231 [exp]	22.2	0.8274

Compare expression of checked genes

Lus10014383 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.