Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G27880 772 / 0 AGO5 ARGONAUTE 5, Argonaute family protein (.1) AT1G48410 737 / 0 AGO1 ARGONAUTE 1, Stabilizer of iron transporter SufD / Polynucleotidyl transferase (.1.2.3) AT5G43810 728 / 0 PNH, ZLL, AGO10 ZWILLE, PINHEAD, ARGONAUTE 10, Stabilizer of iron transporter SufD / Polynucleotidyl transferase (.1.2) AT1G69440 436 / 1e-135 ZIP, AGO7 ZIPPY, ARGONAUTE7, Argonaute family protein (.1) AT5G21150 379 / 2e-115 AGO9 ARGONAUTE 9, Argonaute family protein (.1) AT2G27040 368 / 4e-111 OCP11, AGO4 OVEREXPRESSOR OF CATIONIC PEROXIDASE 11, ARGONAUTE 4, Argonaute family protein (.1.2) AT2G32940 352 / 8e-106 AGO6 ARGONAUTE 6, Argonaute family protein (.1) AT5G21030 323 / 4e-95 PAZ domain-containing protein / piwi domain-containing protein (.1) AT1G31280 326 / 6e-95 AGO2 argonaute 2, Argonaute family protein (.1) AT1G31290 322 / 2e-92 AGO3 ARGONAUTE 3 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023882 [exp] 744 / 0 AT1G48410 444 / 2e-146 ARGONAUTE 1, Stabilizer of iron transporter SufD / Polynucleotidyl transferase (.1.2.3) Lus10031331 [exp] 742 / 0 AT1G48410 1621 / 0.0 ARGONAUTE 1, Stabilizer of iron transporter SufD / Polynucleotidyl transferase (.1.2.3) Lus10006627 [exp] 733 / 0 AT5G43810 1658 / 0.0 ZWILLE, PINHEAD, ARGONAUTE 10, Stabilizer of iron transporter SufD / Polynucleotidyl transferase (.1.2) Lus10039386 [exp] 733 / 0 AT5G43810 1647 / 0.0 ZWILLE, PINHEAD, ARGONAUTE 10, Stabilizer of iron transporter SufD / Polynucleotidyl transferase (.1.2) Lus10017983 [exp] 724 / 0 AT1G48410 1602 / 0.0 ARGONAUTE 1, Stabilizer of iron transporter SufD / Polynucleotidyl transferase (.1.2.3) Lus10041978 [exp] 723 / 0 AT1G48410 1579 / 0.0 ARGONAUTE 1, Stabilizer of iron transporter SufD / Polynucleotidyl transferase (.1.2.3) Lus10031904 [exp] 637 / 0 AT1G48410 1481 / 0.0 ARGONAUTE 1, Stabilizer of iron transporter SufD / Polynucleotidyl transferase (.1.2.3) Lus10036795 [exp] 451 / 2e-142 AT1G69440 1248 / 0.0 ZIPPY, ARGONAUTE7, Argonaute family protein (.1) Lus10037136 [exp] 454 / 6e-142 AT1G69440 1267 / 0.0 ZIPPY, ARGONAUTE7, Argonaute family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G118600 [exp] 871 / 0 AT2G27880 1068 / 0.0 ARGONAUTE 5, Argonaute family protein (.1) Potri.009G001500 [exp] 800 / 0 AT2G27880 1192 / 0.0 ARGONAUTE 5, Argonaute family protein (.1) Potri.001G213700 [exp] 788 / 0 AT2G27880 1214 / 0.0 ARGONAUTE 5, Argonaute family protein (.1) Potri.015G029000 [exp] 742 / 0 AT1G48410 1549 / 0.0 ARGONAUTE 1, Stabilizer of iron transporter SufD / Polynucleotidyl transferase (.1.2.3) Potri.012G037100 [exp] 736 / 0 AT1G48410 1560 / 0.0 ARGONAUTE 1, Stabilizer of iron transporter SufD / Polynucleotidyl transferase (.1.2.3) Potri.008G158800 [exp] 722 / 0 AT5G43810 1688 / 0.0 ZWILLE, PINHEAD, ARGONAUTE 10, Stabilizer of iron transporter SufD / Polynucleotidyl transferase (.1.2) Potri.010G081300 [exp] 721 / 0 AT5G43810 1663 / 0.0 ZWILLE, PINHEAD, ARGONAUTE 10, Stabilizer of iron transporter SufD / Polynucleotidyl transferase (.1.2) Potri.010G163800 [exp] 452 / 2e-141 AT1G69440 1304 / 0.0 ZIPPY, ARGONAUTE7, Argonaute family protein (.1) Potri.016G024200 [exp] 385 / 2e-117 AT2G27040 1246 / 0.0 OVEREXPRESSOR OF CATIONIC PEROXIDASE 11, ARGONAUTE 4, Argonaute family protein (.1.2) Potri.006G025900 [exp] 380 / 2e-115 AT2G27040 1236 / 0.0 OVEREXPRESSOR OF CATIONIC PEROXIDASE 11, ARGONAUTE 4, Argonaute family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0638 [flax] [poplar] PAZ PF02170 [flax] [poplar] PAZ PAZ domain CL0219 [flax] [poplar] RNase_H PF02171 [flax] [poplar] Piwi Piwi domain CL0219 [flax] [poplar] PF08699 [flax] [poplar] ArgoL1 Argonaute linker 1 domain
Representative CDS sequence Show only first row Show all	>Lus10014386 pacid=23143676 polypeptide=Lus10014386 locus=Lus10014386.g ID=Lus10014386.BGIv1.0 annot-version=v1.0 ATGTATGGGCGAGGACGTGGCCGTCGAGGCGGAGGCCGCACGCAGGCGAATCGCGGACGAGGCTCGTCCTCTGGCGTGGTGCCGTACAGTGACGCTGGAT CTTCGTCTTCTGGCGTGGCTGACGAGTTCCAGAGGCTCTCAGTGGGTGGTACTAGTACCCCTGGGGCTTCTTCTTCTCAACTTTCTCCCCCGCTGCAGTT TCCTGTGGCCACCCTGCCAACTGAGGTTGAGCAGGAGAAGCAGCTCGTTCCGGCGCCGTCCAGGTCCGTCAAGTTCGTGGGAAGGCCGGACTACGGCTCT GTTGGTACTCGATGTATCATTCAGGCGAATCACTTTCTTGTGGAGCTGAGTGACAGGGACCTGCACCACTACGACGTTTCTGTTAAGCCTGAAGTTACCT CTAGGAAGGTTAATAGGCTGATAATCGAACAGCTACTGGAGAAAAACAAGAACGAGTTCTCTGGCAGAGTGCCTGCCTACGATGGACGGAAAGGTTTGTA CACAGCAGGGCCTCTGCCATTCACCACCAAGGACTTTACTGTTAAACTTCGTGACAAGGGCAAAGCTGGTTCCACCAGGAACGAGAGAGAATTTGACGTT GCTGTGAAGTTTGCTGCCAGAGTCAATTTGCACCACCTGCAGGAGTTCCTTATGGCGAGAAGAAGGGACGCTCCTCACGAGACCATTCAAGCCCTTGATG TGGTGCTCAGAGAGTCTCCTTCAAACAATTGCATTGTTGTTGGCCGATCTTTCTTCGGCGCTCAATTTGGCAGCAGAAATCCACTAGGAGGTGGAGTAGA ATGTTGGACCGGGTTCTACCAGAGCCTTCGGCCAACGCAGATGGGCATGTCACTTAATTTGGATGTCTCTTTCACTGCCTTCTATGAGGGGATCAGTGTT ACTGAATTCGTGCTGAAGTTCCTTAATCTAGATCCAGGACGAGCAATGTTGAGGCCATTGCATGATGGTGACCGCCTGAAGGTGAGGAAAGTGTTGAAGG GGATTAGAGTTGAGGTTACTCATGGGGAGAACAAGCGTTACAAAATCACTGGCCTATCTCAGCAGCCACTGAACCAGCTAAGGTTTACTGACAGGGACGG GACACAACTTTCAGTTGTGAACTATTTCTTAGAAAAATACAATATCAGGCTTCAACATACTTCTTGGCCTGCTCTGCAGTCTGGAAATGATGCAAGGCCT ATATATTTGCCAATGGAGATTGTCAATTCTAATAACTATGAGAAAGACGAGCTGGCAAATGAATTTGGTCTTAGTATTAAGCAAGAGATGGCTTCCATCA ATGCCCGAGTGCTTCCGTCTCCAGTGCTCAAGTATCATGATTCTGGCAAGGATATCACTCTAAGGCCACGGGTGGGTCAGTGGAACATGATAAACGCTAA AATGTTCAATGGTGCGACTATCAACTCTTGGACGTGTGTAAACTTCTCCACTCTAACAGATTTTGTGGCTGCTGGATTCGCTCAGAATCTAATGAACATG TGCCGCAACAAAGGATTGAATGTTAATCCTCAACCAGTCTTGCAAATCAAAACAAGCCGGCCTGAGCAAATTGAGAATACATTAATGGAGGTGCACAGGA GGTTTACTGACAGGGACGGGACACAACTTTCAGTTGTGAACTATTTCTTAGAAAAATACAATATCAGGCTTCAGCATACTTCTTGGCCTGCTCTGCAGTC TGGAAACGATGCAAGGCCTATATATTTGCCAATGGAGTGCTGCCGCATTACCGATGGTCAGAAGTATCCTAAGAAGCTAAACGAAAGACAAGTGACTGCC CTATTGAGAGAGGCCTGCAAGCGTCCCAACGATAGGCGTGCGAGCATCAAAGAGATTGTCAATTCTAATAACTATGAGAAAGACGAGCTGGCAAATGAAT TTGGTCTTAGTATTAAGCAAGAGATGGCTTCCATCAATGCCCGAGTGCTTCCTCCTCCAGTGCTCAAGTATCATGATTCTGGCAAGGATATCACTCTAAG GCCACGGGTGGGTCAGTGGAACATGATAAACGCTAAAATGTTCAATGGTGCGACTATCAACTCTTGGACGTGTGTAAACTTCTCCACTCTAACAGATTTT GTGGCTGCTGGATTCGCTCAGAATCTAATGAACATGTGCCGCAACAAAGGATTGACTGTTAATCCTCAACCAGTCTTGCAAATCAAAACAAGCCGGCCTG AGCAAATTGAGAATACATTAATGGAGGTGCACAGGAGGTGTGAAGCGCTGGAACTGCTGATAATCATCTTGCCTGACTACAGTGGGACATACGGCCATAT TAAAAAGCTTTGTGAGACCGAACTTGGTATCGTTTCTCAATGCTGTCAGCCTAGACATGCTAGAAAATCCAGTCCTCAATATCTAGAGAATGTAGCTATG AAGATAAATGTTAAGGCTGGCGGTCGAAATGCAGTACTTCAGGATGCAATCAACAGAAGGATACCTCTCTTGAGCGATGCTCCGACGATAATATTTGGAG CGGATGTGACACATCCGCAGCCAGGAGAGGATTCCGGGCCTTCAATTGCAGCAGTTGTTGCATCAATGGATTGGCCTGTGATGACTACCTATAAAGGCCT TGTTTCTGCTCAGCACCATAGGGAAGAAATCATACAAGATTTATACAAATTGGAGCAGCAGCCTGGGAAGAGTGAACTCAAGCATGGTGGAATGATCAGA GAGCTTCTGATTTCTTTTCGAAGAACTACCGGTCAAAAGCCAGCACGAATCATTTTCTACCGGGATGGTGTTAGTGAGGGGCAGTTCAGTCATGTTCTGC TCCACGAAGTCGAAGCAATTCGCAAGGCATGTGCTTCCCTGGAACCCAACTACCAACCAAGAATTACATTTGTAGTGGTTCAGAAGAGGCACCACACGCG CTTCTTCGCAACTGATCCTAGGCAAACAGATAAGAGTGGCAACATTCTGCCTGGAACGGTCGTCGACAGAAACATATGCCATCCCACCGAATTCGACTTT TACCTGTGCAGCCATGCTGGCATCCAGGGAACAAGCCGTCCTGTCCACTATCATGTGCTATACGACGAGAACAAATACAGCTCGGATAAATTGCAGACGC TGACCAATGATCTTTGCTACACCTACGCTAGGTGCACCCGTTCTGTCTCTGTTGTACCTCCAGCGTACTACGCTCACCTTGCTGCTTTCCGAGCAAGATA CTACTTAGAAGGTGAGCCAGGCATTGCATCGGACAGTGGCTCTGGGATTGGAGGTCCAGCTGGTGGGAGGAAGGAGGCAAGGCCGATAGTTCCATTGCCA GAGATCAATGCCAAGGTGAAGAACGTGATGTTCTTCTGTTGA
AA sequence Show only first row Show all	>Lus10014386 pacid=23143676 polypeptide=Lus10014386 locus=Lus10014386.g ID=Lus10014386.BGIv1.0 annot-version=v1.0 MYGRGRGRRGGGRTQANRGRGSSSGVVPYSDAGSSSSGVADEFQRLSVGGTSTPGASSSQLSPPLQFPVATLPTEVEQEKQLVPAPSRSVKFVGRPDYGS VGTRCIIQANHFLVELSDRDLHHYDVSVKPEVTSRKVNRLIIEQLLEKNKNEFSGRVPAYDGRKGLYTAGPLPFTTKDFTVKLRDKGKAGSTRNEREFDV AVKFAARVNLHHLQEFLMARRRDAPHETIQALDVVLRESPSNNCIVVGRSFFGAQFGSRNPLGGGVECWTGFYQSLRPTQMGMSLNLDVSFTAFYEGISV TEFVLKFLNLDPGRAMLRPLHDGDRLKVRKVLKGIRVEVTHGENKRYKITGLSQQPLNQLRFTDRDGTQLSVVNYFLEKYNIRLQHTSWPALQSGNDARP IYLPMEIVNSNNYEKDELANEFGLSIKQEMASINARVLPSPVLKYHDSGKDITLRPRVGQWNMINAKMFNGATINSWTCVNFSTLTDFVAAGFAQNLMNM CRNKGLNVNPQPVLQIKTSRPEQIENTLMEVHRRFTDRDGTQLSVVNYFLEKYNIRLQHTSWPALQSGNDARPIYLPMECCRITDGQKYPKKLNERQVTA LLREACKRPNDRRASIKEIVNSNNYEKDELANEFGLSIKQEMASINARVLPPPVLKYHDSGKDITLRPRVGQWNMINAKMFNGATINSWTCVNFSTLTDF VAAGFAQNLMNMCRNKGLTVNPQPVLQIKTSRPEQIENTLMEVHRRCEALELLIIILPDYSGTYGHIKKLCETELGIVSQCCQPRHARKSSPQYLENVAM KINVKAGGRNAVLQDAINRRIPLLSDAPTIIFGADVTHPQPGEDSGPSIAAVVASMDWPVMTTYKGLVSAQHHREEIIQDLYKLEQQPGKSELKHGGMIR ELLISFRRTTGQKPARIIFYRDGVSEGQFSHVLLHEVEAIRKACASLEPNYQPRITFVVVQKRHHTRFFATDPRQTDKSGNILPGTVVDRNICHPTEFDF YLCSHAGIQGTSRPVHYHVLYDENKYSSDKLQTLTNDLCYTYARCTRSVSVVPPAYYAHLAAFRARYYLEGEPGIASDSGSGIGGPAGGRKEARPIVPLP EINAKVKNVMFFC

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G27880		AGO5	ARGONAUTE 5, Argonaute family ...		Lus10014386 [exp]	0	1
AT2G45190	YABBY	FIL, YAB1, AFO	YABBY1, FILAMENTOUS FLOWER, AB...		Lus10024603 [exp]	1.4	0.9908
AT5G07280		EXS, EMS1	EXTRA SPOROGENOUS CELLS, EXCES...		Lus10014996 [exp]	2.2	0.9853
AT2G45190	YABBY	FIL, YAB1, AFO	YABBY1, FILAMENTOUS FLOWER, AB...		Lus10032240 [exp]	2.4	0.9874
AT2G02540	ZF_HD	ATHB21, ZFHD4, ...	ZINC FINGER HOMEODOMAIN 3, ZIN...		Lus10038135 [exp]	3.5	0.9866
AT5G51800	Trihelix		Protein kinase superfamily pro...		Lus10027398 [exp]	6.0	0.9862
AT2G45480	GRF	ATGRF9	growth-regulating factor 9 (.1...		Lus10038002 [exp]	6.0	0.9830
AT5G11320		YUC4	YUCCA4, Flavin-binding monooxy...		Lus10008092 [exp]	6.6	0.9780
AT1G71691			GDSL-like Lipase/Acylhydrolase...		Lus10001540 [exp]	7.7	0.9801
AT5G09970		CYP78A7	"cytochrome P450, family 78, s...		Lus10035844 [exp]	7.9	0.9846
AT5G04530		KCS19	3-ketoacyl-CoA synthase 19 (.1...		Lus10023458 [exp]	8.1	0.9846

Compare expression of checked genes

Lus10014386 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.