Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G02070 494 / 4e-168 Protein kinase family protein (.1) AT3G53840 446 / 9e-150 Protein kinase superfamily protein (.1) AT2G23450 279 / 1e-84 Protein kinase superfamily protein (.1.2) AT1G21250 275 / 1e-82 PRO25, WAK1 cell wall-associated kinase (.1) AT1G21230 274 / 1e-82 WAK5 wall associated kinase 5 (.1) AT1G21210 270 / 7e-81 WAK4 wall associated kinase 4 (.1) AT5G66790 266 / 2e-80 Protein kinase superfamily protein (.1) AT1G21270 268 / 4e-80 WAK2 wall-associated kinase 2 (.1) AT3G25490 259 / 7e-80 Protein kinase family protein (.1) AT1G79680 268 / 1e-79 ATWAKL10 WALL ASSOCIATED KINASE (WAK)-LIKE 10 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004504 [exp] 280 / 4e-85 AT1G16130 411 / 5e-134 wall associated kinase-like 2 (.1) Lus10032741 [exp] 280 / 1e-84 AT2G23450 578 / 0.0 Protein kinase superfamily protein (.1.2) Lus10008105 [exp] 278 / 3e-84 AT1G16120 419 / 3e-137 wall associated kinase-like 1 (.1) Lus10000741 [exp] 260 / 3e-77 AT2G23450 697 / 0.0 Protein kinase superfamily protein (.1.2) Lus10019657 [exp] 253 / 3e-75 AT2G23450 637 / 0.0 Protein kinase superfamily protein (.1.2) Lus10003063 [exp] 253 / 7e-75 AT1G16130 514 / 2e-173 wall associated kinase-like 2 (.1) Lus10034085 [exp] 251 / 2e-74 AT1G16130 526 / 5e-179 wall associated kinase-like 2 (.1) Lus10022432 [exp] 251 / 5e-74 AT1G18390 543 / 0.0 Protein kinase superfamily protein (.1.2) Lus10016737 [exp] 249 / 1e-73 AT1G18390 544 / 0.0 Protein kinase superfamily protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G118500 [exp] 770 / 0 AT5G02070 577 / 0.0 Protein kinase family protein (.1) Potri.008G059900 [exp] 536 / 0 AT5G02070 628 / 0.0 Protein kinase family protein (.1) Potri.006G090200 [exp] 505 / 2e-172 AT5G02070 783 / 0.0 Protein kinase family protein (.1) Potri.014G038600 [exp] 286 / 2e-87 AT2G23450 620 / 0.0 Protein kinase superfamily protein (.1.2) Potri.005G130900 [exp] 280 / 5e-85 AT2G23450 773 / 0.0 Protein kinase superfamily protein (.1.2) Potri.002G130600 [exp] 278 / 1e-84 AT2G23450 605 / 0.0 Protein kinase superfamily protein (.1.2) Potri.007G034500 [exp] 278 / 4e-84 AT2G23450 731 / 0.0 Protein kinase superfamily protein (.1.2) Potri.005G203401 [exp] 263 / 5e-82 AT1G16120 402 / 1e-134 wall associated kinase-like 1 (.1) Potri.001G040756 [exp] 262 / 5e-82 AT1G69730 448 / 3e-152 Wall-associated kinase family protein (.1) Potri.002G075901 [exp] 265 / 2e-81 AT1G21270 507 / 5e-174 wall-associated kinase 2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain
Representative CDS sequence Show only first row Show all	>Lus10014387 pacid=23143696 polypeptide=Lus10014387 locus=Lus10014387.g ID=Lus10014387.BGIv1.0 annot-version=v1.0 ATGAAGAACACAGCAAAACACCCGTTATTTCTCCTGTGTATCCTCTGCATTCATTTCCTTATCCTCCCCTGCAATTCCCTAAACCTCTGCCCAAACTGCG GCCAAACCAAGATCCCTTACCCACTCAGCACGAACCCCAACTGCGGCGAACCAACCTACGCTCTCCGTTGCGACAACAATTCCCACCTCTACCTTGACGC CCTGAACAAAACCTCCTACCTCGTCCTCCGAATCAACCCCTCCACCCAGCGAATCGTGGTCCAGCCATCACGATTCGCTCCTGGGAAGAAATGCGTCAGC CAGGACATGATGGTCAGCGAAGGCCTAAGGCTGAACCAAACTTTACCATTTAATGTGACTTCTTCCAACACCGTTTTCCTATTCAACTGTTCCCCAAGAC TGTTCAACTCCCCGCTGAACTGCACGCCTTCCAGCCTCTGCCACGCGTACCTGGAGAAGTCAGGAAGAGTCGGGAGAGACGAAGCGGCAAAGTGCGCCAA CGTTCTTGACCCTTGTTGTACGTTTGTAGCCGGCGGGATGCCTTCTGCTTACCGGATTCGGCTTCATAGCTCCGGGTGTAAGGCCTTCAGGAGTGTTGTG AATCTGAATCCTGACAGGAATCCTGAGGAGTGGGAAGATGGATTGGAGATTCAGTGGGCCGATCCGGTCGAACCGGTTTGTAACAAAGGGTATCGGTGGG ACAGTGTCAATGGAACTTGCAAGCGGAAGGGCGATAATAACCGTTACAAGCTGATTCTGTTGAAACTCTGCTTTATTACCATCCCTTTCATATGTGTTGC GCTGATCACGGTTACGATACTAGTATACAAGTCGTCGTTGCGACGAGCTAAGCTGGCGAAGGCGAGGCAAAACATGTTCTCAAGATCGACATCTGGTGGC GGTAACAACAAAACGGCAAGAATGTTCCAATTGAAAGAGGTAAAGAGAGCAACCAACAATTTTTCAAAGTTTCTTGGGAGCGGAGGGTTCGGAGAAGTAT TCAAAGGGGAACTCCAAGATGGAACTCTTGTGGCTGTCAAATCGGCCAAAGTTGGTAACATCAAAAGCACCCAACAAGTCCTCAACGAGGTGGGAATCTT GTCCCAAGTCAACCACAAGAACCTCGTACGTCTCCTTGGATGTTGCATAGAATCGGAGCAACCATTGATGGTGTACGAGTACATCTCGAACGGGACCTTA CACGACCACCTTCAGTTGGTCAGATCTGCTGGCTTCCTGGATTGGAAGACCAGGCTGAGGATTTCTATTCAGACGGCCGAAGCCTTGGCGTATTTGCATT TTGGAGCTCACACTCCGATTTATCATCGAGATGTGAAGTCGACGAACATACTTCTCGACGATCAATTCAACGTGAAAGTATCAGACTTTGGTTTGTCTAG GCTGGCAAAGCCAGGGCTGAGCCACGTGTCGACTTGTGCACAAGGGACGTTGGGTTACTTGGACCCCGAGTACTATAGGAACTACCAGTTGAACGATAAG AGCGATGTATACAGCTTTGGGGTTGTTCTGCTTGAGCTACTTACATCTAGAAAAGCCATCGACTTTTCCCGCGATCAGGACGATATCAACTTGGCCATTT TCGTAATTCGGCGAGGGAACGTAGACGAAGTTGTGGATCGACAGCTGTTTGGGGACCATGGAGACGACGTCGGGGTGTGTGATGCGGTTCGAGGAAGCAT GGAGATGTTTTTGAAGGTGGCTTTGGGTTGCTTGCATGAGAAGAAAGTGGATAGGCCTAGCATGAAAGAAGTGGTACAAGAGTTGGAGAGAATCTTTGAA ATGGTTGATGGAGGAAAAGGTTGTGGTAATGGTGATGCTGGGATCGAGTGTTAG
AA sequence Show only first row Show all	>Lus10014387 pacid=23143696 polypeptide=Lus10014387 locus=Lus10014387.g ID=Lus10014387.BGIv1.0 annot-version=v1.0 MKNTAKHPLFLLCILCIHFLILPCNSLNLCPNCGQTKIPYPLSTNPNCGEPTYALRCDNNSHLYLDALNKTSYLVLRINPSTQRIVVQPSRFAPGKKCVS QDMMVSEGLRLNQTLPFNVTSSNTVFLFNCSPRLFNSPLNCTPSSLCHAYLEKSGRVGRDEAAKCANVLDPCCTFVAGGMPSAYRIRLHSSGCKAFRSVV NLNPDRNPEEWEDGLEIQWADPVEPVCNKGYRWDSVNGTCKRKGDNNRYKLILLKLCFITIPFICVALITVTILVYKSSLRRAKLAKARQNMFSRSTSGG GNNKTARMFQLKEVKRATNNFSKFLGSGGFGEVFKGELQDGTLVAVKSAKVGNIKSTQQVLNEVGILSQVNHKNLVRLLGCCIESEQPLMVYEYISNGTL HDHLQLVRSAGFLDWKTRLRISIQTAEALAYLHFGAHTPIYHRDVKSTNILLDDQFNVKVSDFGLSRLAKPGLSHVSTCAQGTLGYLDPEYYRNYQLNDK SDVYSFGVVLLELLTSRKAIDFSRDQDDINLAIFVIRRGNVDEVVDRQLFGDHGDDVGVCDAVRGSMEMFLKVALGCLHEKKVDRPSMKEVVQELERIFE MVDGGKGCGNGDAGIEC

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G02070			Protein kinase family protein ...		Lus10014387 [exp]	0	1
AT1G75250	MYB	RSM3, ATRL6	RADIALIS-LIKE SANT/MYB 3, RAD-...		Lus10010831 [exp]	1.0	0.9548
AT4G24450		PWD, GWD3, ATGW...	"phosphoglucan, water dikinase...		Lus10032829 [exp]	3.5	0.9285
AT4G17565			F-box family protein with a do...		Lus10035492 [exp]	6.3	0.8714
AT3G47570			Leucine-rich repeat protein ki...		Lus10032306 [exp]	6.7	0.9077
AT5G41040			HXXXD-type acyl-transferase fa...		Lus10032019 [exp]	7.1	0.8615
AT1G69970		CLE26	CLAVATA3/ESR-RELATED 26 (.1.2)		Lus10010735 [exp]	7.3	0.9257
AT2G46660		CYP78A6	"cytochrome P450, family 78, s...		Lus10030216 [exp]	10.0	0.8971
AT4G26640	WRKY	ATWRKY20, WRKY2...	WRKY family transcription fact...		Lus10043167 [exp]	10.5	0.9065
AT5G66900			Disease resistance protein (CC...		Lus10007359 [exp]	10.6	0.9092
AT5G66900			Disease resistance protein (CC...		Lus10020779 [exp]	12.5	0.9113

Compare expression of checked genes

Lus10014387 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.