Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G28110 348 / 6e-115 SCPL45 serine carboxypeptidase-like 45 (.1.2) AT2G33530 344 / 2e-113 SCPL46 serine carboxypeptidase-like 46 (.1) AT5G42240 240 / 2e-73 SCPL42 serine carboxypeptidase-like 42 (.1) AT5G42230 240 / 3e-73 SCPL41 serine carboxypeptidase-like 41 (.1) AT1G43780 230 / 1e-69 SCPL44 serine carboxypeptidase-like 44 (.1) AT2G35780 202 / 3e-59 SCPL26 serine carboxypeptidase-like 26 (.1) AT3G63470 201 / 3e-58 SCPL40 serine carboxypeptidase-like 40 (.1) AT3G07990 197 / 3e-57 SCPL27 serine carboxypeptidase-like 27 (.1) AT1G11080 195 / 5e-56 SCPL31 serine carboxypeptidase-like 31 (.1.2) AT4G30810 193 / 2e-55 SCPL29 serine carboxypeptidase-like 29 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023882 [exp] 613 / 0 AT1G48410 444 / 2e-146 ARGONAUTE 1, Stabilizer of iron transporter SufD / Polynucleotidyl transferase (.1.2.3) Lus10030315 [exp] 568 / 0 AT1G28110 476 / 3e-161 serine carboxypeptidase-like 45 (.1.2) Lus10023446 [exp] 509 / 7e-178 AT1G28110 520 / 0.0 serine carboxypeptidase-like 45 (.1.2) Lus10021856 [exp] 502 / 3e-175 AT1G28110 525 / 0.0 serine carboxypeptidase-like 45 (.1.2) Lus10010331 [exp] 502 / 3e-175 AT1G28110 540 / 0.0 serine carboxypeptidase-like 45 (.1.2) Lus10013395 [exp] 497 / 2e-173 AT1G28110 534 / 0.0 serine carboxypeptidase-like 45 (.1.2) Lus10040324 [exp] 484 / 3e-168 AT2G33530 532 / 0.0 serine carboxypeptidase-like 46 (.1) Lus10030317 [exp] 479 / 3e-166 AT1G28110 501 / 2e-175 serine carboxypeptidase-like 45 (.1.2) Lus10003302 [exp] 474 / 2e-164 AT1G28110 498 / 2e-174 serine carboxypeptidase-like 45 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G034400 [exp] 447 / 8e-154 AT1G28110 566 / 0.0 serine carboxypeptidase-like 45 (.1.2) Potri.016G034600 [exp] 442 / 7e-152 AT1G28110 563 / 0.0 serine carboxypeptidase-like 45 (.1.2) Potri.006G036000 [exp] 439 / 2e-150 AT1G28110 548 / 0.0 serine carboxypeptidase-like 45 (.1.2) Potri.006G036400 [exp] 395 / 2e-133 AT2G33530 547 / 0.0 serine carboxypeptidase-like 46 (.1) Potri.006G036500 [exp] 384 / 4e-129 AT1G28110 619 / 0.0 serine carboxypeptidase-like 45 (.1.2) Potri.003G164000 [exp] 349 / 2e-115 AT1G28110 758 / 0.0 serine carboxypeptidase-like 45 (.1.2) Potri.012G105500 [exp] 347 / 8e-115 AT1G28110 751 / 0.0 serine carboxypeptidase-like 45 (.1.2) Potri.001G065900 [exp] 342 / 8e-113 AT1G28110 766 / 0.0 serine carboxypeptidase-like 45 (.1.2) Potri.015G104700 [exp] 323 / 1e-105 AT1G28110 715 / 0.0 serine carboxypeptidase-like 45 (.1.2) Potri.002G071800 [exp] 236 / 1e-71 AT5G42240 742 / 0.0 serine carboxypeptidase-like 42 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0028 [flax] [poplar] AB_hydrolase PF00450 [flax] [poplar] Peptidase_S10 Serine carboxypeptidase
Representative CDS sequence Show only first row Show all	>Lus10014388 pacid=23143678 polypeptide=Lus10014388 locus=Lus10014388.g ID=Lus10014388.BGIv1.0 annot-version=v1.0 ATGAGGAGCTCTCAGTCATGGATTGTTGTTATGTTCATAATCTCTGGATCGTTATCAGCAATTTGCAGGAAAGTTGAGTCATCATCATCATCATCGTCGT CAAATGAAGCTGACAAGATAGTGAAGCTCCCAGGGCAGCCTGCAGATGTCAGCTTCCAACAGTATGCAGGGTATGTGACTGTTGATGAAACCCAGAAAAG GGAACTTTTCTACTACTTTGTTGAAGCCGAGACTAACTCCTCTTCGAAGCCTCTCGTTCTCTGGCTCAACGGAGGTTTGCAACAATGTTCGACTGACTCG ACCCCTTTTACAAGTTACAAATTTGAAACTCTTGTTTTGATTTTACGTGAAATCTCGATGGATTTTTCGAACAGGTCCGGGATGCTCCTCAATTGGATTT CACTGAGCACAGTCCTTTCAGGCCAACTTATAAGGGTGCCAGTCTGGTCAGAAATGATTATAGCTGGAACAAAGCTCATTGTTACAGAAGCAAACGTGAT ATACTTGGAATCTCCAGCAGGAGTTGGTTTCTCGTATTCTGCAAATCAGACTTTCTATGACTTGGTAAATGATACCATAACTGCCAATGACAACTTGGTG TTCCTACAACAATGGCTACTCAAGTTTCCTGAATACAAGAACAGAGATTTTTACATCACTGGAGAGAGCTATGCTGGTCACTACGTGCCCCAACTAGCAC AGCTATTTCTGGAGTCAGGATCAAATCTCAACTCGAAAGCCATAGCTGGAAACCCATTGTTGGAATTCAACACGGATTTCAACGGGGAAGGAGAATACTA CTGGTCTCACAGCTTGATTTCGGACCACACCTACCGCCTCATCTATACAATCTGCAACACCTCCCAGCTCAGGAGAGAGTCCACTTTGGACACACTTTCC CCGCGGTGCAACATCATCGCAACCCGACTCGCTGCCGAAATTCCGGACAGAAATTCGTTCGATATGTACGATGTCACTTCAGACGTTTGCTTATCGTACA GTGATGTGTCCCAGTCATCACAGGACTCTTTAGCTGCAGCTTTCCACCCATTTTCCGCCCTCCGGTCCAGCCAAGACTCTCGCAGGAATTTCATAAGTTC CCCCTCGCAGAAATCGGGGGAATCGGTAGACATTTGTACGGGAGATAACACGGGGGGCGTACTTGAACAGAAAAGATGTCCAGGATGCTATCCATGCCAA GCTAGTAAACGTCCCGGGCTGGAATTCGTTGTTGTGAACTATGACGACAACAATTTGGAGATCCCAACGATCGGGGTGGTGGGTTCGTTGGTGGGTTCGG GGATCCGAGTACTGGTTTACAGTGGAGATCAAGATTCGGTGCTCCCATTTATAGGGACGAGAGTGCTGGTGAATCGTCTCGCCAAACGGATGAGATTGAA CACGACCGTGCCGTACAAACCTTGGTTTGATGATGACAAACAGGCTGGTGGATGGACACAAGTGTATGGGGAGAATAAGCTGGAATTTGCAACTATTAGA GGAGCTTCTCACCTGGCTCCTTACACTTCACCAAAGAGATCGCTTGCATTATTTGCCTTTTAA
AA sequence Show only first row Show all	>Lus10014388 pacid=23143678 polypeptide=Lus10014388 locus=Lus10014388.g ID=Lus10014388.BGIv1.0 annot-version=v1.0 MRSSQSWIVVMFIISGSLSAICRKVESSSSSSSSNEADKIVKLPGQPADVSFQQYAGYVTVDETQKRELFYYFVEAETNSSSKPLVLWLNGGLQQCSTDS TPFTSYKFETLVLILREISMDFSNRSGMLLNWISLSTVLSGQLIRVPVWSEMIIAGTKLIVTEANVIYLESPAGVGFSYSANQTFYDLVNDTITANDNLV FLQQWLLKFPEYKNRDFYITGESYAGHYVPQLAQLFLESGSNLNSKAIAGNPLLEFNTDFNGEGEYYWSHSLISDHTYRLIYTICNTSQLRRESTLDTLS PRCNIIATRLAAEIPDRNSFDMYDVTSDVCLSYSDVSQSSQDSLAAAFHPFSALRSSQDSRRNFISSPSQKSGESVDICTGDNTGGVLEQKRCPGCYPCQ ASKRPGLEFVVVNYDDNNLEIPTIGVVGSLVGSGIRVLVYSGDQDSVLPFIGTRVLVNRLAKRMRLNTTVPYKPWFDDDKQAGGWTQVYGENKLEFATIR GASHLAPYTSPKRSLALFAF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G28110		SCPL45	serine carboxypeptidase-like 4...		Lus10014388 [exp]	0	1

Compare expression of checked genes

Lus10014388 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.