Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G10050 837 / 0 OMR1 L-O-methylthreonine resistant 1 (.1) AT4G11640 103 / 6e-24 ATSR serine racemase (.1) AT3G61440 63 / 3e-10 ATCYSC1, ARATH;BSAS3;1 BETA-SUBSTITUTED ALA SYNTHASE 3;1, cysteine synthase C1 (.1.2.3) AT4G14880 49 / 4e-06 OLD3, CYTACS1, OASA1, ATCYS-3A ONSET OF LEAF DEATH 3, O-acetylserine (thiol) lyase (OAS-TL) isoform A1 (.1), O-acetylserine (thiol) lyase (OAS-TL) isoform A1 (.2), O-acetylserine (thiol) lyase (OAS-TL) isoform A1 (.3), O-acetylserine (thiol) lyase (OAS-TL) isoform A1 (.4) AT2G43750 46 / 5e-05 CPACS1, ATCS-B, OASB CHLOROPLAST O-ACETYLSERINE SULFHYDRYLASE 1, ARABIDOPSIS THALIANA CYSTEIN SYNTHASE-B, ARABIDOPSIS CYSTEINE SYNTHASE 1, O-acetylserine (thiol) lyase B (.1), O-acetylserine (thiol) lyase B (.2) AT5G28237 46 / 6e-05 Pyridoxal-5'-phosphate-dependent enzyme family protein (.1) AT3G59760 46 / 7e-05 ATCS-C, OASC ARABIDOPSIS THALIANA CYSTEINSYNTHASE-C, O-acetylserine (thiol) lyase isoform C (.1), O-acetylserine (thiol) lyase isoform C (.2), O-acetylserine (thiol) lyase isoform C (.3) AT3G03630 44 / 0.0003 CS26 cysteine synthase 26 (.1) AT5G28030 43 / 0.0004 DES1 L-cysteine desulfhydrase 1 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023884 [exp] 1090 / 0 AT3G10050 838 / 0.0 L-O-methylthreonine resistant 1 (.1) Lus10027728 [exp] 862 / 0 AT3G10050 787 / 0.0 L-O-methylthreonine resistant 1 (.1) Lus10005369 [exp] 701 / 0 AT3G10050 685 / 0.0 L-O-methylthreonine resistant 1 (.1) Lus10008490 [exp] 114 / 2e-27 AT4G11640 489 / 3e-175 serine racemase (.1) Lus10020520 [exp] 98 / 6e-23 AT3G10050 94 / 5e-23 L-O-methylthreonine resistant 1 (.1) Lus10014765 [exp] 60 / 2e-09 AT3G61440 577 / 0.0 BETA-SUBSTITUTED ALA SYNTHASE 3;1, cysteine synthase C1 (.1.2.3) Lus10019003 [exp] 55 / 1e-07 AT4G14880 508 / 0.0 ONSET OF LEAF DEATH 3, O-acetylserine (thiol) lyase (OAS-TL) isoform A1 (.1), O-acetylserine (thiol) lyase (OAS-TL) isoform A1 (.2), O-acetylserine (thiol) lyase (OAS-TL) isoform A1 (.3), O-acetylserine (thiol) lyase (OAS-TL) isoform A1 (.4) Lus10015947 [exp] 54 / 1e-07 AT4G14880 509 / 0.0 ONSET OF LEAF DEATH 3, O-acetylserine (thiol) lyase (OAS-TL) isoform A1 (.1), O-acetylserine (thiol) lyase (OAS-TL) isoform A1 (.2), O-acetylserine (thiol) lyase (OAS-TL) isoform A1 (.3), O-acetylserine (thiol) lyase (OAS-TL) isoform A1 (.4) Lus10019002 [exp] 50 / 3e-06 AT4G14880 461 / 2e-164 ONSET OF LEAF DEATH 3, O-acetylserine (thiol) lyase (OAS-TL) isoform A1 (.1), O-acetylserine (thiol) lyase (OAS-TL) isoform A1 (.2), O-acetylserine (thiol) lyase (OAS-TL) isoform A1 (.3), O-acetylserine (thiol) lyase (OAS-TL) isoform A1 (.4)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G118400 [exp] 898 / 0 AT3G10050 869 / 0.0 L-O-methylthreonine resistant 1 (.1) Potri.001G106000 [exp] 100 / 7e-23 AT4G11640 460 / 9e-164 serine racemase (.1) Potri.002G160800 [exp] 62 / 6e-10 AT3G61440 570 / 0.0 BETA-SUBSTITUTED ALA SYNTHASE 3;1, cysteine synthase C1 (.1.2.3) Potri.014G086300 [exp] 61 / 1e-09 AT3G61440 570 / 0.0 BETA-SUBSTITUTED ALA SYNTHASE 3;1, cysteine synthase C1 (.1.2.3) Potri.008G153300 [exp] 54 / 2e-07 AT4G14880 482 / 6e-173 ONSET OF LEAF DEATH 3, O-acetylserine (thiol) lyase (OAS-TL) isoform A1 (.1), O-acetylserine (thiol) lyase (OAS-TL) isoform A1 (.2), O-acetylserine (thiol) lyase (OAS-TL) isoform A1 (.3), O-acetylserine (thiol) lyase (OAS-TL) isoform A1 (.4) Potri.005G048700 [exp] 52 / 4e-07 AT4G14880 508 / 0.0 ONSET OF LEAF DEATH 3, O-acetylserine (thiol) lyase (OAS-TL) isoform A1 (.1), O-acetylserine (thiol) lyase (OAS-TL) isoform A1 (.2), O-acetylserine (thiol) lyase (OAS-TL) isoform A1 (.3), O-acetylserine (thiol) lyase (OAS-TL) isoform A1 (.4) Potri.013G035500 [exp] 51 / 1e-06 AT4G14880 509 / 0.0 ONSET OF LEAF DEATH 3, O-acetylserine (thiol) lyase (OAS-TL) isoform A1 (.1), O-acetylserine (thiol) lyase (OAS-TL) isoform A1 (.2), O-acetylserine (thiol) lyase (OAS-TL) isoform A1 (.3), O-acetylserine (thiol) lyase (OAS-TL) isoform A1 (.4) Potri.005G048400 [exp] 50 / 3e-06 AT4G14880 504 / 0.0 ONSET OF LEAF DEATH 3, O-acetylserine (thiol) lyase (OAS-TL) isoform A1 (.1), O-acetylserine (thiol) lyase (OAS-TL) isoform A1 (.2), O-acetylserine (thiol) lyase (OAS-TL) isoform A1 (.3), O-acetylserine (thiol) lyase (OAS-TL) isoform A1 (.4) Potri.005G048066 [exp] 49 / 4e-06 AT3G04940 409 / 3e-144 cysteine synthase D1 (.1) Potri.019G045800 [exp] 49 / 7e-06 AT3G03630 441 / 5e-154 cysteine synthase 26 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0070 [flax] [poplar] ACT PF00585 [flax] [poplar] Thr_dehydrat_C C-terminal regulatory domain of Threonine dehydratase CL0063 [flax] [poplar] NADP_Rossmann PF00291 [flax] [poplar] PALP Pyridoxal-phosphate dependent enzyme
Representative CDS sequence Show only first row Show all	>Lus10014390 pacid=23143725 polypeptide=Lus10014390 locus=Lus10014390.g ID=Lus10014390.BGIv1.0 annot-version=v1.0 ATGGAGGCTCTCCGTCTAGCGTCACCGCAGCATCCGCCACTCTTTCGGAGAACCAGGGAAGCTGAAATCCACGCTCCAATGCCGCTAGCAGCTGGACGCC GTTGTCACGAGCGGAGAGCAGGAAGAAGAAGGATATCCGCCGCGCTATCGAAATCGAAGGCCACGAAAATCTCTCCATTTATACCGCCGGAGGTCGATTT TTCTTCGTTGGCAGCACCACCGGCGGTGGTGGTGGCTGCACCTGCTCCCGTGGAGAGGAGGATAGTTTCGCCGAGCTCGCTACAGTATCCTCCTGGTTTC CTCGGGGCGGTACCGGAAAGGAATGGTGAAGATCGGAGCGACGATATCATCGGCGCCATGGCGTATTTAACCAGTATACTTACGTCCAAGGTGTATGATG TGGCGATTGAATCTCCGCTGCAGTTCGCGCCCAAGTTATCGGAGAAACTCGGTGTCAAGGTCTGGCTGAAACGGGAGGATCTTCAGCCTGTATTTTCCTT CAAGCTGAGAGGTGCATACAACATGATGGCGAAACTTACAAAGGAACAGCTAGAAAGAGGAGTCATATGCTCATCAGCTGGAAACCATGCCCAGGGTGTT GCATTATCTGCCAAAAGACTCGGTTGCAATGCTATCATTGCTATGCCTGTCACTACACCTGACATCAAGTGGAAATCAGTTGAAAGATTAGGTGCCACGG TTGTTCTGATTGGAGATTCATACGACGAGGCACAAGCATATGCTAAACAGAGAAGCAAACAGGAGGGTTTGACGTTTGTACCTCCTTTTGATCACCCAGA CGTGATTATAGGACAAGGAACCGTTGGTATGGAGATCTTTCGCCAGATCCAAGGCCCTGTGCATGCTATCTTCGTGCCTGTTGGTGGTGGTGGTTTAATT GCTGGCATTGCTGCATATGTAAAGAGAGTTAATCCTGATGTAAAGATCATTGGAGTTGAACCAGCAGATGCAAATGCTATGGCATTGTCATTGCATCACA ACCAAAGAGTGGTATTGGACCAGGTTGGAGGGTGTGCGGATGGTGTGGCCGTTAAAGAGGTTGGGGAGGAAACTTTTCGGTTATGCAAGGAATTGATAGA TGGTGTAGTTCTAGTAAGCCGGGATGGTATCTGCGCTTCCATAAAGGACATGTTTGAAGAAAAAAGGAGCATATTAGAGCCAGCAGGTGCTCTTGCTCTT GCTGGTGCTGAAGCGTACTGCAAATATTATGGCCTAAAGGGAGAAAATGTAGTGGCGATAACCAGTGGGGCAAATATGAACTTTGATAAACTGAGAGTGG TAACTGAGCTTGCCAATGTAGGCAGACAACAAGAAGCTGTGCTTGCAACAGTCATGCCTGAAGACCCTGGGAGCTTCAAAAACTTCTGCGAACTGGTGGG TCCTATCAATATAACCGAGTTCAAGTACAGAAGAAATTCTGAAAAGGAGGCGGTTGTTCTGTACAGTGTTGGACTCCATATGGCTTCTGAACTTGATGCG ATGAAGCAACGGATGGAATCAGCTCAGCTAAGAACTCACAATCTGACAGAAAGTGATCTGGTCAAGGACCACTTGCGTTACTTGATGGGCGGCAGATCAA CTGTTGGAGACGAGGTTCTGTGTCGATTCGTCTTTCCGGAGAGGCCAGGCGCTCTGATGAAGTTCCTCGATACGTTCAGTCCTCGCTGGGACATTAGCTT GTTCCACTACAGAGCCCAGGGTGAAACAGGCGCAAACGTGCTGGTCGGAATCCAAGTTCAGCAGAGTGATATGGGCGAGTTCTACAGCCGGGCCAACTGT CTCGGATACGATTTCGTCGTTGTTACTGATGACGACAAGTTCCAGCTCCTGATGCAGTAA
AA sequence Show only first row Show all	>Lus10014390 pacid=23143725 polypeptide=Lus10014390 locus=Lus10014390.g ID=Lus10014390.BGIv1.0 annot-version=v1.0 MEALRLASPQHPPLFRRTREAEIHAPMPLAAGRRCHERRAGRRRISAALSKSKATKISPFIPPEVDFSSLAAPPAVVVAAPAPVERRIVSPSSLQYPPGF LGAVPERNGEDRSDDIIGAMAYLTSILTSKVYDVAIESPLQFAPKLSEKLGVKVWLKREDLQPVFSFKLRGAYNMMAKLTKEQLERGVICSSAGNHAQGV ALSAKRLGCNAIIAMPVTTPDIKWKSVERLGATVVLIGDSYDEAQAYAKQRSKQEGLTFVPPFDHPDVIIGQGTVGMEIFRQIQGPVHAIFVPVGGGGLI AGIAAYVKRVNPDVKIIGVEPADANAMALSLHHNQRVVLDQVGGCADGVAVKEVGEETFRLCKELIDGVVLVSRDGICASIKDMFEEKRSILEPAGALAL AGAEAYCKYYGLKGENVVAITSGANMNFDKLRVVTELANVGRQQEAVLATVMPEDPGSFKNFCELVGPINITEFKYRRNSEKEAVVLYSVGLHMASELDA MKQRMESAQLRTHNLTESDLVKDHLRYLMGGRSTVGDEVLCRFVFPERPGALMKFLDTFSPRWDISLFHYRAQGETGANVLVGIQVQQSDMGEFYSRANC LGYDFVVVTDDDKFQLLMQ

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G10050		OMR1	L-O-methylthreonine resistant ...		Lus10014390 [exp]	0	1
AT1G67590			Remorin family protein (.1.2)		Lus10015817 [exp]	1.0	0.9107
AT3G12110		ACT11	actin-11 (.1)		Lus10005163 [exp]	3.5	0.8766
AT5G46290		KAS1, KAS I, KA...	KETOACYL-ACP SYNTHASE 1, 3-ket...		Lus10040883 [exp]	3.5	0.8937
AT5G46290		KAS1, KAS I, KA...	KETOACYL-ACP SYNTHASE 1, 3-ket...		Lus10004935 [exp]	3.5	0.8860
AT1G67590			Remorin family protein (.1.2)		Lus10036996 [exp]	3.9	0.8856
AT4G18100			Ribosomal protein L32e (.1)		Lus10007541 [exp]	5.3	0.8491
AT5G55160		ATSUMO2, SUMO2,...	small ubiquitin-like modifier ...		Lus10022539 [exp]	5.8	0.8455
AT2G43360		BIOB, BIO2	BIOTIN AUXOTROPH B, BIOTIN AUX...		Lus10025559 [exp]	10.2	0.8929
AT2G47640			Small nuclear ribonucleoprotei...		Lus10030367 [exp]	11.0	0.8544
AT1G67590			Remorin family protein (.1.2)		Lus10036997 [exp]	11.2	0.8640

Compare expression of checked genes

Lus10014390 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.