Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G36670 589 / 0 Eukaryotic aspartyl protease family protein (.1.2) AT5G22850 531 / 0 Eukaryotic aspartyl protease family protein (.1) AT1G08210 483 / 1e-167 Eukaryotic aspartyl protease family protein (.1) AT3G02740 315 / 3e-102 Eukaryotic aspartyl protease family protein (.1) AT5G36260 307 / 5e-99 Eukaryotic aspartyl protease family protein (.1) AT1G05840 301 / 1e-96 Eukaryotic aspartyl protease family protein (.1) AT1G65240 279 / 2e-88 Eukaryotic aspartyl protease family protein (.1) AT3G42550 243 / 4e-75 Eukaryotic aspartyl protease family protein (.1) AT5G43100 169 / 6e-46 Eukaryotic aspartyl protease family protein (.1) AT3G25700 154 / 1e-41 Eukaryotic aspartyl protease family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027732 [exp] 684 / 0 AT2G36670 634 / 0.0 Eukaryotic aspartyl protease family protein (.1.2) Lus10035556 [exp] 684 / 0 AT2G36670 623 / 0.0 Eukaryotic aspartyl protease family protein (.1.2) Lus10021397 [exp] 527 / 0 AT5G22850 677 / 0.0 Eukaryotic aspartyl protease family protein (.1) Lus10005356 [exp] 511 / 2e-178 AT5G22850 669 / 0.0 Eukaryotic aspartyl protease family protein (.1) Lus10036430 [exp] 316 / 2e-102 AT3G02740 550 / 0.0 Eukaryotic aspartyl protease family protein (.1) Lus10027001 [exp] 315 / 3e-102 AT5G36260 546 / 0.0 Eukaryotic aspartyl protease family protein (.1) Lus10020201 [exp] 315 / 5e-102 AT5G36260 550 / 0.0 Eukaryotic aspartyl protease family protein (.1) Lus10041103 [exp] 312 / 6e-101 AT3G02740 548 / 0.0 Eukaryotic aspartyl protease family protein (.1) Lus10021485 [exp] 291 / 1e-92 AT1G05840 723 / 0.0 Eukaryotic aspartyl protease family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G118800 [exp] 658 / 0 AT2G36670 585 / 0.0 Eukaryotic aspartyl protease family protein (.1.2) Potri.016G096700 [exp] 629 / 0 AT2G36670 578 / 0.0 Eukaryotic aspartyl protease family protein (.1.2) Potri.001G213600 [exp] 550 / 0 AT5G22850 704 / 0.0 Eukaryotic aspartyl protease family protein (.1) Potri.009G001700 [exp] 537 / 0 AT5G22850 711 / 0.0 Eukaryotic aspartyl protease family protein (.1) Potri.019G054900 [exp] 308 / 2e-99 AT3G02740 572 / 0.0 Eukaryotic aspartyl protease family protein (.1) Potri.014G146400 [exp] 292 / 2e-93 AT1G05840 758 / 0.0 Eukaryotic aspartyl protease family protein (.1) Potri.014G020200 [exp] 161 / 6e-43 AT5G43100 807 / 0.0 Eukaryotic aspartyl protease family protein (.1) Potri.005G144600 [exp] 159 / 3e-42 AT5G43100 729 / 0.0 Eukaryotic aspartyl protease family protein (.1) Potri.015G053300 [exp] 158 / 4e-42 AT1G49050 611 / 0.0 Eukaryotic aspartyl protease family protein (.1.2) Potri.005G069600 [exp] 141 / 5e-37 AT4G33490 530 / 0.0 Eukaryotic aspartyl protease family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0129 [flax] [poplar] Peptidase_AA PF00026 [flax] [poplar] Asp Eukaryotic aspartyl protease
Representative CDS sequence Show only first row Show all	>Lus10014391 pacid=23143739 polypeptide=Lus10014391 locus=Lus10014391.g ID=Lus10014391.BGIv1.0 annot-version=v1.0 ATGCGGGTTCCTCCGCCGCCGCCTAATTGGCCGCTGCTCCTGATCACCGCGGCGGTAGCACTCACCGGCTCAGTCGTTACCCTGACGGAAGCTGACGGCG CCGGTATCCTCCATATTCAAAGAGCTTTGCCTCTGAACTATAGCTCAATAGCTATCGACCAACTCAGAGCCATGGACCAAGCTAGGCACGCCCGGTTATT GCAGCAATTTGTTGGCGGCGTAGTCGACTTCTCAGTCCACGGCTCCTCCGATTCTTATCTCGCTGGGCTGTATTTCACTAAACTGAAGTTGGGTTCACCA CCTAGAGAATTCAGCGTACAGATTGACACAGGAAGTGACGCATTGTGGGTTAATTGCGACTCATGTGCTAACTGTCCACGCACTAGCGCCCTTGGGATTG AGCTTAATTTCTTTGATGCTGTTGCCTCCTCCACCACGAGGATGATTTCGTGTTCGGATACAATCTGTAATGCAGCTGCTCGAACTGGTTCGACTCAGTG TTCGGAGATTGGTCATTGTGGCTATACGATCCAGTATGGAGATGGCAGTGGAACTACAGGCGTTTATATGTCTGATACCTTGTTTTTCGACTCGATTTTC TCCGGTTCCATGGTCGTCAATTCATCAGCCCTTATCGTGTTTGGTTGTAGTATCTACCAGTCTGGAGACTTGACTAAGACAGACAAAGCAGTTGACGGTA TTTTTGGATTTGGGCAAGGACCTCTCTCAGTTATATCGCAATTATCCTCGAGAGGAATGACGACTAGAGTTTTCTCTCACTGCTTAAAAGGAGACGGCAA TGGAGGTGGAATATTCGTTCTCGGGGAGATTGTGGAGCCGGGAATCATCTATACTCCACTCGTCCCATCACAGACTCACTACAATTTAAATCTGCAGAGC ATTGCTGTAAATGGGCAGGTGTTACCCGTCAATCCAGCGGTCTTTGCAACGTCAGCTGATCGAGGGACGATTGTCGACACAGGAACTACTTTGGCATATC TTGTGGAAGAAGCTTATGATCCGTTCGTTAGTGCTATTAATGCTGCAGTATCACAAACCGTGACTCCCACGATAAGCAGGGGATACCAGTGTTACTTAGT CAGTTCGAGTGTATCTGAGCTATTTCCTCTGGTGAGCTTTAATTTCGTCGGGGGTGCTTCCCTCGTATTAAAACCAGACGACTACCTTGTTCAGCAAGGC GTCATTCAGGATGGTGGTAGGACGTGGTGCATAGGTTTCCAGAAGTATCAAGGACAGACAATTTTAGGAGATCTTGCTCTTAAAGATAAGATTTTCGTAT ATGATCTTACCCATCAGCGAATCGGATGGACTAACTATGACTGCTCATTACCTGTAAATGTATCTGTACCTTCTGCTAAGGACTTCATCAATGCCAGACA GTTGAGCGTAAGTCGGTCATCAAGAGACGTGCTGTTGGAGATGCTGCCTCTGGCCGTTGCAGCTCTCTTCTTCTGCATATCAGCATTGCTTGGGGTCAAC TTTTTGTATATTTAA
AA sequence Show only first row Show all	>Lus10014391 pacid=23143739 polypeptide=Lus10014391 locus=Lus10014391.g ID=Lus10014391.BGIv1.0 annot-version=v1.0 MRVPPPPPNWPLLLITAAVALTGSVVTLTEADGAGILHIQRALPLNYSSIAIDQLRAMDQARHARLLQQFVGGVVDFSVHGSSDSYLAGLYFTKLKLGSP PREFSVQIDTGSDALWVNCDSCANCPRTSALGIELNFFDAVASSTTRMISCSDTICNAAARTGSTQCSEIGHCGYTIQYGDGSGTTGVYMSDTLFFDSIF SGSMVVNSSALIVFGCSIYQSGDLTKTDKAVDGIFGFGQGPLSVISQLSSRGMTTRVFSHCLKGDGNGGGIFVLGEIVEPGIIYTPLVPSQTHYNLNLQS IAVNGQVLPVNPAVFATSADRGTIVDTGTTLAYLVEEAYDPFVSAINAAVSQTVTPTISRGYQCYLVSSSVSELFPLVSFNFVGGASLVLKPDDYLVQQG VIQDGGRTWCIGFQKYQGQTILGDLALKDKIFVYDLTHQRIGWTNYDCSLPVNVSVPSAKDFINARQLSVSRSSRDVLLEMLPLAVAALFFCISALLGVN FLYI

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G36670			Eukaryotic aspartyl protease f...		Lus10014391 [exp]	0	1
AT5G22290	NAC	FSQ6, FAN, ANAC...	fructose-sensing quantitative ...		Lus10042518 [exp]	1.0	0.8009
AT4G23840			Leucine-rich repeat (LRR) fami...		Lus10003886 [exp]	9.8	0.6952
AT3G16560			Protein phosphatase 2C family ...		Lus10008378 [exp]	11.0	0.6865
AT1G78960		ATLUP2	lupeol synthase 2 (.1)		Lus10016439 [exp]	18.3	0.6779
					Lus10019266 [exp]	20.8	0.6493
AT1G11340			S-locus lectin protein kinase ...		Lus10006745 [exp]	23.9	0.6795
AT5G11420			Protein of unknown function, D...		Lus10008080 [exp]	24.2	0.6862
AT2G03090		ATHEXPALPHA1.3,...	EXPANSIN 15, expansin A15 (.1)		Lus10020257 [exp]	25.8	0.6708
AT5G60020		LAC17, ATLAC17	laccase 17 (.1)		Lus10034614 [exp]	28.1	0.6744
					Lus10007551 [exp]	31.1	0.6389

Compare expression of checked genes

Lus10014391 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.