Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G36660 552 / 0 PAB7 poly(A) binding protein 7 (.1) AT1G71770 429 / 5e-142 PAB5 poly(A)-binding protein 5 (.1), poly(A)-binding protein 5 (.2) AT4G34110 426 / 9e-142 PABP2, PAB2, ATPAB2 ARABIDOPSIS POLY\(A\) BINDING 2, poly(A) binding protein 2 (.1) AT1G22760 425 / 7e-141 PAB3 poly(A) binding protein 3 (.1) AT1G49760 420 / 1e-138 PABP8, PAB8 poly(A) binding protein 8 (.1), poly(A) binding protein 8 (.2) AT2G23350 410 / 3e-135 PABP4, PAB4 poly(A) binding protein 4 (.1) AT3G16380 342 / 2e-110 PAB6 poly(A) binding protein 6 (.1) AT1G34140 269 / 5e-84 PAB1 poly(A) binding protein 1 (.1) AT1G49600 112 / 3e-26 ATRBP47A RNA-binding protein 47A (.1) AT5G19350 108 / 3e-25 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023885 [exp] 1145 / 0 AT2G36660 570 / 0.0 poly(A) binding protein 7 (.1) Lus10027733 [exp] 858 / 0 AT2G36660 569 / 0.0 poly(A) binding protein 7 (.1) Lus10035556 [exp] 806 / 0 AT2G36670 623 / 0.0 Eukaryotic aspartyl protease family protein (.1.2) Lus10010042 [exp] 432 / 9e-144 AT4G34110 865 / 0.0 ARABIDOPSIS POLY\(A\) BINDING 2, poly(A) binding protein 2 (.1) Lus10010370 [exp] 430 / 1e-142 AT4G34110 845 / 0.0 ARABIDOPSIS POLY\(A\) BINDING 2, poly(A) binding protein 2 (.1) Lus10002835 [exp] 411 / 2e-135 AT4G34110 918 / 0.0 ARABIDOPSIS POLY\(A\) BINDING 2, poly(A) binding protein 2 (.1) Lus10027886 [exp] 407 / 1e-133 AT4G34110 922 / 0.0 ARABIDOPSIS POLY\(A\) BINDING 2, poly(A) binding protein 2 (.1) Lus10021396 [exp] 360 / 7e-117 AT1G49760 351 / 6e-114 poly(A) binding protein 8 (.1), poly(A) binding protein 8 (.2) Lus10012070 [exp] 115 / 2e-27 AT1G49600 470 / 5e-165 RNA-binding protein 47A (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G304000 [exp] 427 / 9e-142 AT4G34110 837 / 0.0 ARABIDOPSIS POLY\(A\) BINDING 2, poly(A) binding protein 2 (.1) Potri.002G124200 [exp] 412 / 5e-136 AT1G49760 822 / 0.0 poly(A) binding protein 8 (.1), poly(A) binding protein 8 (.2) Potri.014G025400 [exp] 408 / 2e-134 AT1G49760 789 / 0.0 poly(A) binding protein 8 (.1), poly(A) binding protein 8 (.2) Potri.002G062700 [exp] 403 / 2e-132 AT1G22760 638 / 0.0 poly(A) binding protein 3 (.1) Potri.009G099300 [exp] 402 / 5e-132 AT4G34110 850 / 0.0 ARABIDOPSIS POLY\(A\) BINDING 2, poly(A) binding protein 2 (.1) Potri.001G191500 [exp] 350 / 4e-113 AT3G16380 370 / 5e-122 poly(A) binding protein 6 (.1) Potri.014G034600 [exp] 115 / 3e-27 AT1G47490 439 / 2e-152 RNA-binding protein 47C (.1.2) Potri.009G054400 [exp] 111 / 3e-26 AT5G19350 554 / 0.0 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Potri.009G105300 [exp] 112 / 4e-26 AT3G19130 479 / 6e-168 RNA-binding protein 47B (.1) Potri.002G128100 [exp] 110 / 9e-26 AT1G47490 404 / 6e-139 RNA-binding protein 47C (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0221 [flax] [poplar] RRM PF00076 [flax] [poplar] RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) CL0221 [flax] [poplar] PF00658 [flax] [poplar] PABP Poly-adenylate binding protein, unique domain
Representative CDS sequence Show only first row Show all	>Lus10014392 pacid=23143666 polypeptide=Lus10014392 locus=Lus10014392.g ID=Lus10014392.BGIv1.0 annot-version=v1.0 ATGGCGGTCCCTCCGACGGCTTCGGCGACTGCGACGACGGTTATTCCGGCGGCGTCTCTGTACGTCGGAGACCTCCACCCGGAAACCGACGACGCTAAGC TCCGCGATGCGTTCTCCGAGTTCAACAGCCTGGATACCGTCCGCGTGTGTCGAGACTCCAACACCGGGAGGTCTCTCTGTTATGGTTACGTCAACTTCAT GTCTCCACAGGAAGCTGTGCAAGCTATGGAGATGAAGAATCATACTCAATTGAATGGAAAAGCAATGAGAGTTTCATGGGCACACAGGGATCCTGATGCA AGGAAGAGTGGAGTAGGAAATGTGTTTGTTAAGAATTTGAATGACTCTGTTACAAATGTTGCACTGCAAGAGCTATTTGGAAAATATGGGAATATCGTGT CTTGCAAAGTTGCAACATCCGATGATGGAAAGACTAAAGGCCATGGCTTTGTTCAATTTGATAGCGAGGAATCTGCAAAGTCTGCGATCGAAAAGCTAAA TGGCTGTATGTTTCATGATAAGCAGATGTATGTTGGAAAATTCATTAAAAGAAGTGATCGAGCTTTCTCCAGCCCTGATGCTAAATACACTAATCTGTAT TTTAAGAACTTGGAGCTAGATGTCACAGAAGAGCTTCTGCATGAGAAATTTTCCAAGCATGGCACTGTGTCTAGTTTGGTAGTCGCCAGAGATGACAGTG GATCCTCTAGGGGTTTTGGCTTTGTGAATTTTGCCAATTCAGATGATGCTAAACGTGCTGTAGAGGCAATGAATGGGATTGAACTCGGATCAAAGACTCT CTATGTCGGAAGGGCACAGAAGAAAGCTGAGCGGGAGCAGATTCTCCGTCGTCAGTTTGAAGAGAAACGCATGGAGCAGATATTGAAATACAAGGGTTCT AATGTGTATGTTAAGAACATAGATGATGATGTTACTGATGAAGAACTGAGAGAACACTTCAGCCAGTGTGGGACAATCACTTCTTCAAAGCTTATGAGAG ACGACAAAGGACAAAGTAAGGGTTTCGGTTTTGTCTGCTTCTCCAACCCTGAGGAAGCTAATAAAGCAGTGAACACATTCCATGGATGCATGTTTCACCG CAAGCCATTGTATGTTGCTATTGCTCAAAAGAAGGAGGATAGGCAAGTCCAATTGCAGATGCAGTATGCACATCGCATGGTTGGCCTACCGGGACCTTCA ACTGCTGTTATGCCTGCTGGATATCCCCCTTTTATCTACACAGCTCCACCGGGCCTTGTTTCTCAAGTACCTCCACGGCCTGGACTTATGTACAACCCTT TTGGTATGATTAGGCCAGGATGGAGAGGTAATAGCTTTGCTCCTGCAATCAGACCAGCATATCAACAACCACCGCAGTTTCCCCTGATGCTTAATGTTCA AAGGCAACAAAGGCCAAACAGAGGAAGGATGAATGGCAATACGCTCCCTCAAGTTGCCAATTCGCCTTTCTGTATGCAACTTGCTTCTCAACCTCTGCCT TCGCCAAAAGATCATAACAACCAGAGGATTCCACAGACTAAATATGTTCCAAGTGGTCGTTCACGCGAGTCGAGCAAAGGGTCTTCGAATTCTTCAGGGG GGACAGAGATGCTGAGCACAATGCTAGCCGCTGCTTCCCCGGAGAGTCAGAAACAAATTCTAGGGGAGTATCTATACCCCCTCGTCAAGCAGCATAACCC TGAACTTTGCTCAAAGATAACTGGAATGCTACTGGAGATGGACAACGGAGAGCTGCTTCTGCTGCTGGAATCGCCAGAGTCACTGGCTGCAAAGGTGGAA GAAGCTGTGCAGGTTCTTAAGCTGTCGAGTATCGCTGTTTCGGGGCAAGACACCAATATGCATTCCAGCAATTACCACATCTCTCCTGAGGTTGCTGTCA ATTGA
AA sequence Show only first row Show all	>Lus10014392 pacid=23143666 polypeptide=Lus10014392 locus=Lus10014392.g ID=Lus10014392.BGIv1.0 annot-version=v1.0 MAVPPTASATATTVIPAASLYVGDLHPETDDAKLRDAFSEFNSLDTVRVCRDSNTGRSLCYGYVNFMSPQEAVQAMEMKNHTQLNGKAMRVSWAHRDPDA RKSGVGNVFVKNLNDSVTNVALQELFGKYGNIVSCKVATSDDGKTKGHGFVQFDSEESAKSAIEKLNGCMFHDKQMYVGKFIKRSDRAFSSPDAKYTNLY FKNLELDVTEELLHEKFSKHGTVSSLVVARDDSGSSRGFGFVNFANSDDAKRAVEAMNGIELGSKTLYVGRAQKKAEREQILRRQFEEKRMEQILKYKGS NVYVKNIDDDVTDEELREHFSQCGTITSSKLMRDDKGQSKGFGFVCFSNPEEANKAVNTFHGCMFHRKPLYVAIAQKKEDRQVQLQMQYAHRMVGLPGPS TAVMPAGYPPFIYTAPPGLVSQVPPRPGLMYNPFGMIRPGWRGNSFAPAIRPAYQQPPQFPLMLNVQRQQRPNRGRMNGNTLPQVANSPFCMQLASQPLP SPKDHNNQRIPQTKYVPSGRSRESSKGSSNSSGGTEMLSTMLAAASPESQKQILGEYLYPLVKQHNPELCSKITGMLLEMDNGELLLLLESPESLAAKVE EAVQVLKLSSIAVSGQDTNMHSSNYHISPEVAVN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G36660		PAB7	poly(A) binding protein 7 (.1)		Lus10014392 [exp]	0	1
AT4G13930		SHM4	serine hydroxymethyltransferas...		Lus10022557 [exp]	4.9	0.7594
AT5G06750			Protein phosphatase 2C family ...		Lus10004170 [exp]	7.9	0.7727
AT5G61250		ATGUS1	glucuronidase 1 (.1.2)		Lus10037109 [exp]	18.4	0.7258
AT5G64130			cAMP-regulated phosphoprotein ...		Lus10028499 [exp]	21.7	0.6597
					Lus10006666 [exp]	26.1	0.7219
AT1G49320		ATUSPL1	unknown seed protein like 1 (....		Lus10006665 [exp]	26.1	0.7040
AT4G36920	AP2_ERF	FL1, FLO2, AP2	FLORAL MUTANT 2, FLOWER 1, APE...		Lus10023165 [exp]	29.1	0.7562
AT1G79400		ATCHX2	cation/H+ exchanger 2, cation/...		Lus10024131 [exp]	29.6	0.7269
AT1G71230		CSN5B, AJH2	COP9-signalosome 5B (.1)		Lus10026947 [exp]	30.0	0.7253
					Lus10032831 [exp]	34.2	0.6720

Compare expression of checked genes

Lus10014392 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.