Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G53110 595 / 0 LOS4 LOW EXPRESSION OF OSMOTICALLY RESPONSIVE GENES 4, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT1G72730 224 / 7e-68 DEA(D/H)-box RNA helicase family protein (.1) AT3G19760 219 / 6e-66 EIF4A-III eukaryotic initiation factor 4A-III (.1) AT3G13920 215 / 1e-64 RH4, TIF4A1, EIF4A1 eukaryotic translation initiation factor 4A1 (.1.2.3.4) AT1G54270 211 / 8e-63 EIF4A-2 eif4a-2 (.1.2) AT1G51380 203 / 4e-60 DEA(D/H)-box RNA helicase family protein (.1) AT4G00660 194 / 1e-55 ATRH8 RNAhelicase-like 8 (.1.2) AT3G61240 193 / 3e-55 DEA(D/H)-box RNA helicase family protein (.1), DEA(D/H)-box RNA helicase family protein (.2) AT2G45810 188 / 3e-53 DEA(D/H)-box RNA helicase family protein (.1) AT5G11170 182 / 9e-52 DEAD/DEAH box RNA helicase family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023886 [exp] 949 / 0 AT3G53110 606 / 0.0 LOW EXPRESSION OF OSMOTICALLY RESPONSIVE GENES 4, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10017407 [exp] 217 / 3e-65 AT3G19760 728 / 0.0 eukaryotic initiation factor 4A-III (.1) Lus10010206 [exp] 207 / 2e-61 AT3G19760 717 / 0.0 eukaryotic initiation factor 4A-III (.1) Lus10017804 [exp] 187 / 4e-53 AT4G00660 854 / 0.0 RNAhelicase-like 8 (.1.2) Lus10017153 [exp] 185 / 4e-53 AT3G13920 785 / 0.0 eukaryotic translation initiation factor 4A1 (.1.2.3.4) Lus10006878 [exp] 184 / 1e-52 AT3G13920 787 / 0.0 eukaryotic translation initiation factor 4A1 (.1.2.3.4) Lus10014260 [exp] 184 / 1e-52 AT5G11200 794 / 0.0 DEAD/DEAH box RNA helicase family protein (.1.2.3) Lus10037620 [exp] 184 / 1e-52 AT3G13920 786 / 0.0 eukaryotic translation initiation factor 4A1 (.1.2.3.4) Lus10014783 [exp] 183 / 2e-51 AT4G00660 853 / 0.0 RNAhelicase-like 8 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G119000 [exp] 743 / 0 AT3G53110 646 / 0.0 LOW EXPRESSION OF OSMOTICALLY RESPONSIVE GENES 4, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.005G093900 [exp] 228 / 3e-69 AT3G19760 693 / 0.0 eukaryotic initiation factor 4A-III (.1) Potri.007G070000 [exp] 224 / 6e-68 AT3G19760 689 / 0.0 eukaryotic initiation factor 4A-III (.1) Potri.006G225700 [exp] 219 / 5e-66 AT3G13920 797 / 0.0 eukaryotic translation initiation factor 4A1 (.1.2.3.4) Potri.018G061050 [exp] 218 / 2e-65 AT3G13920 793 / 0.0 eukaryotic translation initiation factor 4A1 (.1.2.3.4) Potri.001G197900 [exp] 216 / 8e-65 AT3G13920 786 / 0.0 eukaryotic translation initiation factor 4A1 (.1.2.3.4) Potri.003G043700 [exp] 216 / 1e-64 AT3G13920 791 / 0.0 eukaryotic translation initiation factor 4A1 (.1.2.3.4) Potri.014G081100 [exp] 187 / 6e-53 AT4G00660 822 / 0.0 RNAhelicase-like 8 (.1.2) Potri.002G157500 [exp] 185 / 3e-52 AT4G00660 817 / 0.0 RNAhelicase-like 8 (.1.2) Potri.006G253100 [exp] 181 / 1e-51 AT5G11170 808 / 0.0 DEAD/DEAH box RNA helicase family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [flax] [poplar] P-loop_NTPase PF00271 [flax] [poplar] Helicase_C Helicase conserved C-terminal domain CL0023 [flax] [poplar] P-loop_NTPase PF00270 [flax] [poplar] DEAD DEAD/DEAH box helicase
Representative CDS sequence Show only first row Show all	>Lus10014393 pacid=23143697 polypeptide=Lus10014393 locus=Lus10014393.g ID=Lus10014393.BGIv1.0 annot-version=v1.0 ATGGCGGACAAGGAACCCACCGTTTCCGTCGAATCCACCTCTACCGCCGAATCCACCAGCTCAGAGGTCGTCGAGAAGAAGACTACACCGGAGCCGAAGC GTTTGTGGAGTGACGAGGTAGACGATCCTTCAGAGGTAGGAACGCTTCCGCCGCCGCTGCCGGCTGAGGAAGGTCCTTCGAAATCCGATATCTCCGAACT CGACATCGAGACGTTAAAGATCGACGCCGATAAGAAGAATGTGAACGAGTTTCTGGAAGAGCCAGAGGACTCCACCATCCAAGCGGTTACTACTGGTGAA ACGCCGTATACATCTGCATCTAGGTTTGAAGAGCTGAACCTCTCGCCAGAGTTGCTGAAAGGTTTATATGTAGAGATGAAGTTTAAGCAGCCTAGTAAGA TTCAGGCCATTAGTCTGCCGATGATGCTGACTCCTCCGTACAAGGATTTGGTTGCTCAGGCACATAATGGTTCGGGCAAGACAACCTGTTTTGTGCTTGG GATGCTCAGTCGTGTAGATCCGTCGGAACGAGCTCCTCAGGCTCTCTGCATTTGTCCCACGAGAGAATTGGCTATTCAGAATATAGAAGTTCTACAGAAG ATGGGGAAGTACACTGGGATTACCTCCGAATGTGCTGTCCCTATGGACACTGGCAATGACAGGTTCAAACCCCGGCCTCCAGTATTTGCTCAAGTTGTAG TTGGGACCCCGGGAACCATTAAAAGGCTAATGTCACACAAAAAACTAAGCATACAAAAGATGAAGGTTCTGGTATTTGACGAGGCAGATCACATGCTGGC AAAGGATGGTTTTCAAGACGACTCCATTAGGATCATAAAGGACATTCAAAAAGCCCAACTTCAAGTTCAGGTTCTTCTATTCTCAGCCACATTCGATGAG AACGTGAAGAATTTTGTTCCTAGGGTTGTCAACGACTACAACCAGCTCTTTGTTAAGAAGGAAGAACTATCTTTGGCATCTGTCAAGCAATACAAGGTTT TATGCCCCGATGAGATGGCCAAGATTCTTGTGATCAAAGACAGAATTCTTGAACTTGGAGAGAAAGTCGGGCAGATAATAATATTCGTCAACTCCAAGAG ATCTGCAGCCATGCTCCACGCTTCCTTAGTCGACTTCGGCTACGAAGTTACAACCATACACGGTGCCCTTAATCACGAAGACCGTGATAAAATCGTCAAG GAGTTTAAGGACAACTTGACAAAAGTCCTGATTTCAACCGACGTGCTTGCCCGAGGTTTCGACCAGCAACGGGTTAATTTGGTCATCAACTATGACCTCC CGATCAAGTACGACAACTCAGAGCCTCGGCCGTCCCGTAGGACTCCTCCAGAGCCTCATTTCGAGGTGTACCTCCACAGGATCGGTAGAGCAGGGCGTTT CGGCAGGAAAGGTGCTGTGTTCAACTTAATCATGAACGATACCGAACAGATGCTCCTGGAAAAGATTGAGAGGTACTTCAACAGTCCTGCAGTCGAGGTT CCGTCGTGGGACAGTGAAGAGGACTTCTCGGCGGCTCTCAAGTCTGCTGGCTTGCTCTGA
AA sequence Show only first row Show all	>Lus10014393 pacid=23143697 polypeptide=Lus10014393 locus=Lus10014393.g ID=Lus10014393.BGIv1.0 annot-version=v1.0 MADKEPTVSVESTSTAESTSSEVVEKKTTPEPKRLWSDEVDDPSEVGTLPPPLPAEEGPSKSDISELDIETLKIDADKKNVNEFLEEPEDSTIQAVTTGE TPYTSASRFEELNLSPELLKGLYVEMKFKQPSKIQAISLPMMLTPPYKDLVAQAHNGSGKTTCFVLGMLSRVDPSERAPQALCICPTRELAIQNIEVLQK MGKYTGITSECAVPMDTGNDRFKPRPPVFAQVVVGTPGTIKRLMSHKKLSIQKMKVLVFDEADHMLAKDGFQDDSIRIIKDIQKAQLQVQVLLFSATFDE NVKNFVPRVVNDYNQLFVKKEELSLASVKQYKVLCPDEMAKILVIKDRILELGEKVGQIIIFVNSKRSAAMLHASLVDFGYEVTTIHGALNHEDRDKIVK EFKDNLTKVLISTDVLARGFDQQRVNLVINYDLPIKYDNSEPRPSRRTPPEPHFEVYLHRIGRAGRFGRKGAVFNLIMNDTEQMLLEKIERYFNSPAVEV PSWDSEEDFSAALKSAGLL

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G53110		LOS4	LOW EXPRESSION OF OSMOTICALLY ...		Lus10014393 [exp]	0	1
AT2G23070			Protein kinase superfamily pro...		Lus10019296 [exp]	1.7	0.9333
AT1G23170			Protein of unknown function DU...		Lus10021774 [exp]	1.7	0.9410
AT1G20200		HAP15, EMB2719	HAPLESS 15, EMBRYO DEFECTIVE 2...		Lus10027832 [exp]	2.0	0.9328
AT4G26690		GDPDL3, GPDL2, ...	SHAVEN 3, MUTANT ROOT HAIR 5, ...		Lus10032576 [exp]	2.8	0.9362
AT1G45000			AAA-type ATPase family protein...		Lus10017475 [exp]	3.5	0.9179
AT5G06590			unknown protein		Lus10021091 [exp]	4.5	0.9121
AT4G11820		FKP1, EMB2778, ...	FLAKY POLLEN 1, hydroxymethylg...		Lus10002961 [exp]	6.6	0.9118
AT5G04700			Ankyrin repeat family protein ...		Lus10019887 [exp]	6.9	0.8941
AT1G21480			Exostosin family protein (.1.2...		Lus10028632 [exp]	9.5	0.9151
AT5G41940			Ypt/Rab-GAP domain of gyp1p su...		Lus10023237 [exp]	9.6	0.9045

Compare expression of checked genes

Lus10014393 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.