Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G53120 265 / 3e-90 VPS37-1 Modifier of rudimentary (Mod(r)) protein (.1) AT2G36680 263 / 2e-89 Modifier of rudimentary (Mod(r)) protein (.1), Modifier of rudimentary (Mod(r)) protein (.2), Modifier of rudimentary (Mod(r)) protein (.3), Modifier of rudimentary (Mod(r)) protein (.4)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023888 [exp] 380 / 3e-134 AT2G36680 266 / 1e-89 Modifier of rudimentary (Mod(r)) protein (.1), Modifier of rudimentary (Mod(r)) protein (.2), Modifier of rudimentary (Mod(r)) protein (.3), Modifier of rudimentary (Mod(r)) protein (.4)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G097000 [exp] 298 / 4e-103 AT3G53120 249 / 3e-84 Modifier of rudimentary (Mod(r)) protein (.1) Potri.006G119200 [exp] 277 / 7e-95 AT3G53120 269 / 6e-92 Modifier of rudimentary (Mod(r)) protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0596 [flax] [poplar] VPS23_C PF07200 [flax] [poplar] Mod_r Modifier of rudimentary (Mod(r)) protein
Representative CDS sequence Show only first row Show all	>Lus10014395 pacid=23143693 polypeptide=Lus10014395 locus=Lus10014395.g ID=Lus10014395.BGIv1.0 annot-version=v1.0 ATGTTCAAATTCTGGGGAAACCAGGAGCAGGATCCGCAACAGCGGCCGCAAGACGTTGCGCAGTCGTGGTACCCTCCATCTGTAGTTGGAGGATCCTCCT CACAGGGCTCCTCTCGTCCAGGGACCCCGAGTGGTGGTTCTGCTAGTGGTGGATTTGGTTTGAATCGGCCTTTGGATACTCCTTCGCATGTTTCTCCAGC TGAAGCTGCTGGTGTTATTGCTCTTTTGAAGGATAAAAGTGTCGATGATCTAAGGAAGCTATTGTCGGACAAAGATGCATACAATCAGTTTCTGTTTTCG CTTGATCAGGTCAAGATACAAAATAATATACGAGATGAACTTCGCAAGGAGACGTTGCAGCTTGCAAGGGAAAATATGGACAAGGAGCCTCGCATAGTGG AGCTAAGAAATCAATGCCAGATCATAAGAACGACAGAGCTGGCAGCCGCGCAAGAGAAACTGAACGAGCTGGAAAGAAAGAAGGACGAAATGCTGAGGTC CCGCTCGCCAGCTTCCCTCCTTCACAAGCTTCAAGAGGCGATGAGCAAGACAGATGACGAATCGGAAGCAGTAAACAGACAATTTCTCGACAGAGAGATC GATCTTGCAACATTTGTGCAGAGGTACAAAAAGCTCCGGACCACATACCAAAAGCGATCTCTCATCCAGTTAGCAACCAAGACATCGACAGGCTGA
AA sequence Show only first row Show all	>Lus10014395 pacid=23143693 polypeptide=Lus10014395 locus=Lus10014395.g ID=Lus10014395.BGIv1.0 annot-version=v1.0 MFKFWGNQEQDPQQRPQDVAQSWYPPSVVGGSSSQGSSRPGTPSGGSASGGFGLNRPLDTPSHVSPAEAAGVIALLKDKSVDDLRKLLSDKDAYNQFLFS LDQVKIQNNIRDELRKETLQLARENMDKEPRIVELRNQCQIIRTTELAAAQEKLNELERKKDEMLRSRSPASLLHKLQEAMSKTDDESEAVNRQFLDREI DLATFVQRYKKLRTTYQKRSLIQLATKTSTG

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G36680			Modifier of rudimentary (Mod(r...		Lus10014395 [exp]	0	1
AT1G55960			Polyketide cyclase/dehydrase a...		Lus10033334 [exp]	2.0	0.9092
AT3G54840		ARA6, AtRABF1, ...	Ras-related small GTP-binding ...		Lus10017462 [exp]	3.0	0.9235
AT3G21610			Acid phosphatase/vanadium-depe...		Lus10035299 [exp]	3.2	0.8874
AT5G05987		PRA1.A2	prenylated RAB acceptor 1.A2 (...		Lus10030160 [exp]	3.5	0.8976
AT1G69450			Early-responsive to dehydratio...		Lus10037139 [exp]	3.5	0.8969
AT4G11570			Haloacid dehalogenase-like hyd...		Lus10002002 [exp]	4.5	0.8945
AT1G06400		ARA2, AtRABA1a,...	ARABIDOPSIS THALIANA RAB GTPAS...		Lus10029789 [exp]	5.7	0.8895
AT4G23430		AtTic32-IVa	translocon at the inner envelo...		Lus10035481 [exp]	5.9	0.8901
AT5G62610	bHLH	bHLH079	basic helix-loop-helix (bHLH) ...		Lus10036659 [exp]	7.7	0.8918
AT2G02360		ATPP2-B10	phloem protein 2-B10 (.1)		Lus10013463 [exp]	8.5	0.8319

Compare expression of checked genes

Lus10014395 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.