Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G27930 171 / 5e-54 PLATZ transcription factor family protein (.1) AT1G32700 153 / 2e-46 PLATZ transcription factor family protein (.1.2) AT1G21000 152 / 1e-45 PLATZ transcription factor family protein (.1.2) AT1G76590 149 / 2e-44 PLATZ transcription factor family protein (.1) AT4G17900 145 / 4e-43 PLATZ transcription factor family protein (.1.2) AT1G43000 137 / 2e-40 PLATZ transcription factor family protein (.1) AT5G46710 127 / 5e-36 PLATZ transcription factor family protein (.1) AT3G60670 96 / 4e-24 PLATZ transcription factor family protein (.1) AT1G31040 96 / 4e-24 PLATZ transcription factor family protein (.1) AT2G12646 94 / 6e-23 PLATZ transcription factor family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027735 [exp] 253 / 1e-85 AT1G21000 218 / 9e-72 PLATZ transcription factor family protein (.1.2) Lus10035554 [exp] 242 / 3e-81 AT1G21000 221 / 4e-73 PLATZ transcription factor family protein (.1.2) Lus10000482 [exp] 159 / 3e-48 AT4G17900 284 / 2e-97 PLATZ transcription factor family protein (.1.2) Lus10030968 [exp] 156 / 4e-47 AT4G17900 299 / 1e-103 PLATZ transcription factor family protein (.1.2) Lus10040082 [exp] 155 / 5e-47 AT4G17900 306 / 2e-106 PLATZ transcription factor family protein (.1.2) Lus10004577 [exp] 155 / 8e-47 AT4G17900 287 / 6e-99 PLATZ transcription factor family protein (.1.2) Lus10023411 [exp] 153 / 7e-45 AT1G21000 313 / 7e-107 PLATZ transcription factor family protein (.1.2) Lus10040292 [exp] 150 / 8e-45 AT1G21000 317 / 3e-110 PLATZ transcription factor family protein (.1.2) Lus10020337 [exp] 150 / 2e-44 AT4G17900 282 / 3e-96 PLATZ transcription factor family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G119400 [exp] 237 / 1e-79 AT2G27930 212 / 3e-70 PLATZ transcription factor family protein (.1) Potri.001G212400 [exp] 231 / 4e-77 AT2G27930 224 / 6e-75 PLATZ transcription factor family protein (.1) Potri.016G097100 [exp] 231 / 4e-77 AT1G32700 200 / 3e-65 PLATZ transcription factor family protein (.1.2) Potri.009G003200 [exp] 226 / 5e-75 AT2G27930 227 / 3e-76 PLATZ transcription factor family protein (.1) Potri.003G092800 [exp] 160 / 2e-49 AT4G17900 290 / 5e-100 PLATZ transcription factor family protein (.1.2) Potri.001G141500 [exp] 160 / 3e-49 AT4G17900 302 / 5e-105 PLATZ transcription factor family protein (.1.2) Potri.019G051200 [exp] 156 / 2e-47 AT4G17900 309 / 2e-107 PLATZ transcription factor family protein (.1.2) Potri.005G259000 [exp] 156 / 3e-47 AT1G21000 366 / 1e-129 PLATZ transcription factor family protein (.1.2) Potri.002G002200 [exp] 155 / 7e-47 AT1G21000 365 / 2e-129 PLATZ transcription factor family protein (.1.2) Potri.013G078500 [exp] 154 / 2e-46 AT4G17900 312 / 1e-108 PLATZ transcription factor family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04640 [flax] [poplar] PLATZ PLATZ transcription factor
Representative CDS sequence Show only first row Show all	>Lus10014396 pacid=23143738 polypeptide=Lus10014396 locus=Lus10014396.g ID=Lus10014396.BGIv1.0 annot-version=v1.0 ATGTCACCGGTGCCGCCTTGGCTGGAGTCGCTGCTCAGCACCGCCTTCTTCTCTGCATGCCGGACTCACAGGGATTCAGCGAGGAGCGAATGCAACATGT ACTGTTTGGACTGTAAGGGAGATTCGTTCTGCTTCTATTGCCGGTCTTCGAAACACAAGGATCATCAAGTCATCCAGATACGGAGGTCGTCGTATCACGA TGTGGTGAGAGTAAGGGAAGTGGAGGAGGTTCTGGATATAAGTGGAGTGCAGACTTATGTGATAAACAGTGCGAGAGTGATGTTCTTGAATGAACGGCCG CAGCCGAAACCCGGGAAAGGCGGAGGCGGTGGCGGAGGAGGAGGAGTTGCTCACGTTTGCGAGATTTGTGGCCGGAGTTTGCTGGATCCACTGCGATTCT GTTCTTTGGGTTGTAAGCTTGTTGGAATAAAGAAGAATGGGAATGCAAGGTTTAGCAAGGAAGGCAAGAATGAAGGAAGGGGAGAAGAAGAAGCAAACGA GGAAGAAGAAGAAGAAGAAGAAAGAAGAGTTATAGGGAGGTCTAGAGCGATGATGTCGTCATCGTCATCACCAAATGAACATGAATTGCAACAAGGAGAA GATATGTACAAAGCAATTCCATCTTCTAACGCAAGAAGAAGAAAAGGGATTCCCCGTCGAGCACCTTTCTTTGCTTCCTAA
AA sequence Show only first row Show all	>Lus10014396 pacid=23143738 polypeptide=Lus10014396 locus=Lus10014396.g ID=Lus10014396.BGIv1.0 annot-version=v1.0 MSPVPPWLESLLSTAFFSACRTHRDSARSECNMYCLDCKGDSFCFYCRSSKHKDHQVIQIRRSSYHDVVRVREVEEVLDISGVQTYVINSARVMFLNERP QPKPGKGGGGGGGGGVAHVCEICGRSLLDPLRFCSLGCKLVGIKKNGNARFSKEGKNEGRGEEEANEEEEEEEERRVIGRSRAMMSSSSSPNEHELQQGE DMYKAIPSSNARRRKGIPRRAPFFAS

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G76590			PLATZ transcription factor fam...		Lus10014396 [exp]	0	1
AT1G64960		HEB1	hypersensitive to excess boron...		Lus10025197 [exp]	7.1	0.8905
AT3G29810		COBL2	COBRA-like protein 2 precursor...		Lus10042386 [exp]	8.0	0.8873
AT1G64960		HEB1	hypersensitive to excess boron...		Lus10025198 [exp]	10.6	0.8764
					Lus10022042 [exp]	13.4	0.8490
AT1G09570		FHY2, HY8, FRE1...	ELONGATED HYPOCOTYL 8, FAR RED...		Lus10007594 [exp]	16.4	0.8763
					Lus10017966 [exp]	16.7	0.8640
AT2G38750		ANNAT4	annexin 4 (.1)		Lus10024171 [exp]	20.6	0.8651
AT3G02100			UDP-Glycosyltransferase superf...		Lus10003453 [exp]	23.2	0.8370
AT2G21540		ATSFH3	SEC14-like 3 (.1.2.3)		Lus10042303 [exp]	24.2	0.8362
AT5G51780	bHLH	bHLH036	basic helix-loop-helix (bHLH) ...		Lus10027395 [exp]	24.6	0.8772

Compare expression of checked genes

Lus10014396 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.