Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G36690 478 / 2e-169 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT3G60290 266 / 9e-87 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT2G44800 264 / 8e-86 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT4G10490 256 / 1e-82 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT4G10500 251 / 7e-81 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT5G24530 213 / 4e-66 DMR6 DOWNY MILDEW RESISTANT 6, 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT5G07480 211 / 3e-65 KUOX1 KAR-UP oxidoreductase 1 (.1) AT2G38240 192 / 5e-58 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT3G11180 192 / 3e-57 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2) AT5G05600 191 / 4e-57 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023890 [exp] 691 / 0 AT2G36690 486 / 5e-173 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10030185 [exp] 231 / 5e-73 AT4G10490 442 / 3e-156 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10032930 [exp] 225 / 8e-71 AT5G24530 504 / 0.0 DOWNY MILDEW RESISTANT 6, 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10015573 [exp] 221 / 4e-69 AT5G24530 510 / 0.0 DOWNY MILDEW RESISTANT 6, 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10035782 [exp] 216 / 6e-67 AT5G24530 258 / 4e-84 DOWNY MILDEW RESISTANT 6, 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10032502 [exp] 215 / 1e-66 AT5G07480 396 / 3e-138 KAR-UP oxidoreductase 1 (.1) Lus10024882 [exp] 203 / 4e-62 AT5G24530 271 / 2e-89 DOWNY MILDEW RESISTANT 6, 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10000711 [exp] 199 / 9e-61 AT5G24530 263 / 4e-86 DOWNY MILDEW RESISTANT 6, 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10006518 [exp] 192 / 2e-57 AT3G21420 523 / 0.0 LATERAL BRANCHING OXIDOREDUCTASE 1, 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G029700 [exp] 482 / 4e-171 AT2G36690 478 / 1e-169 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.010G231500 [exp] 454 / 8e-160 AT2G36690 474 / 3e-168 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.014G106700 [exp] 258 / 1e-83 AT4G10490 468 / 2e-166 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.001G080600 [exp] 252 / 3e-81 AT5G07480 453 / 9e-161 KAR-UP oxidoreductase 1 (.1) Potri.001G451900 [exp] 250 / 3e-80 AT4G10490 498 / 3e-178 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.011G150100 [exp] 248 / 9e-80 AT4G10490 501 / 2e-179 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.001G451700 [exp] 232 / 2e-73 AT4G10500 451 / 6e-160 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.015G002800 [exp] 227 / 2e-71 AT5G24530 521 / 0.0 DOWNY MILDEW RESISTANT 6, 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.001G451600 [exp] 226 / 6e-71 AT4G10500 406 / 5e-142 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.012G006300 [exp] 223 / 4e-70 AT5G24530 506 / 0.0 DOWNY MILDEW RESISTANT 6, 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0029 [flax] [poplar] Cupin PF03171 [flax] [poplar] 2OG-FeII_Oxy 2OG-Fe(II) oxygenase superfamily
Representative CDS sequence Show only first row Show all	>Lus10014398 pacid=23143721 polypeptide=Lus10014398 locus=Lus10014398.g ID=Lus10014398.BGIv1.0 annot-version=v1.0 ATGTCTCCTGCAATGGCGATTCCGGCAAAGAACAACGTTGAAGATCAGCATGAATATCAGAAAGGAGTGAAGCAGCTGTACGAGAAAGGCATTAACAAAC TGCCCAGGAAGTACATACTGCCCGCCCAAGAACGACCGATAAACGACACGAAATTCAATCTGAATGTGAAGCAGAGTAATGTCAAGCTTCCTGTAATTGA CTTTTCCCAGCTCCAAGGTCCCAATCGTGCGAAGCTCCTCGCCTCCCTCGCCATTGCCTGCGAGGAATACGGATTTTTTCAGGTGGTGAACCATGGGATT CCGGACAGGGTGATAAGCGACATGATCGACGTCGGAGGCAGATTCTTTGCTCAGTCGTACGAGGAGAGGTCGAAGTACATGTCGTCGAACATGAAATCGT TGGTCCGGTACGGGACTAGCTTTAACCAGAACAAGGACAATGTGTTTTGCTGGAGAGATTTCCTTAAGCTTGTGTGCCATCCTCTGCCCGAAGTGCTTCC TCACTGGCCTTCCTCCCCTCGAGATTTTAGGAAGGTGGCGGCTACCTACGCGAAAGAGACCAAATACCTGTCCGTGATGCTAATGGAAGCCATCTTACAG AGCTTAACACAAGGCACGACGACTGCGCCGTCACCCGAAACGACGCCGTTCGGAGAAGAAGAGGAGGTGACGACGGAGCTTTTCGAAAATGGTAGCCAGC TAATGGTGGTCAACTGCTACCCGCCGTGCCCGGAGCCGGACCTCACCCTCGGAATGCCGCCGCACTCCGATTACGGCTTCCTCACTTTGCTACTCCAAGA CGACGTCGCTGGCCTCCAGATTCAGCACCGCGACACGTGGCTCACCGTCGACCCCATTCCCAATGCCTTCGTCGTCAATATCGGCGACCATCTCGAGATA TTTAGCAATGGGAGATACAAGAGCGTGCTACACAGAGTAGTGACGAATCAAGTGAGGAATAGAATATCAGTGGCTTCTCTACACAGCCTTCCGTTCGATT ATACGGTGAGACCATGGTCGAAGCTGATCGACGAACATAACCCTAAGCGGTATAGAGACACCGATTTCGCGACTTTTCTTCAGTACATCTCTTCATGCGA GCCCAAGAGGAAAAATTTCCTTGAGTCCAGGAAAATAAAACTATGA
AA sequence Show only first row Show all	>Lus10014398 pacid=23143721 polypeptide=Lus10014398 locus=Lus10014398.g ID=Lus10014398.BGIv1.0 annot-version=v1.0 MSPAMAIPAKNNVEDQHEYQKGVKQLYEKGINKLPRKYILPAQERPINDTKFNLNVKQSNVKLPVIDFSQLQGPNRAKLLASLAIACEEYGFFQVVNHGI PDRVISDMIDVGGRFFAQSYEERSKYMSSNMKSLVRYGTSFNQNKDNVFCWRDFLKLVCHPLPEVLPHWPSSPRDFRKVAATYAKETKYLSVMLMEAILQ SLTQGTTTAPSPETTPFGEEEEVTTELFENGSQLMVVNCYPPCPEPDLTLGMPPHSDYGFLTLLLQDDVAGLQIQHRDTWLTVDPIPNAFVVNIGDHLEI FSNGRYKSVLHRVVTNQVRNRISVASLHSLPFDYTVRPWSKLIDEHNPKRYRDTDFATFLQYISSCEPKRKNFLESRKIKL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G36690			2-oxoglutarate (2OG) and Fe(II...		Lus10014398 [exp]	0	1
AT5G05340			Peroxidase superfamily protein...		Lus10034207 [exp]	4.1	0.9277
AT1G22380		ATUGT85A3	UDP-glucosyl transferase 85A3 ...		Lus10032220 [exp]	13.0	0.8893
AT3G04720		HEL, PR-4, PR4	HEVEIN-LIKE, pathogenesis-rela...		Lus10006557 [exp]	14.6	0.8886
AT4G23030			MATE efflux family protein (.1...		Lus10017836 [exp]	14.7	0.8622
AT1G17020		ATSRG1, SRG1	senescence-related gene 1 (.1)		Lus10038141 [exp]	16.1	0.8477
AT1G49790			F-box associated ubiquitinatio...		Lus10038938 [exp]	18.3	0.8413
AT5G06839	bZIP	TGA10, bZIP65	TGACG \(TGA\) motif-binding pr...		Lus10027802 [exp]	19.1	0.8727
AT1G75900		EXL3	GDSL-like Lipase/Acylhydrolase...		Lus10013572 [exp]	19.8	0.8648
AT1G68810	bHLH	bHLH030	basic helix-loop-helix (bHLH) ...		Lus10001885 [exp]	20.7	0.8739
AT3G07490		AtCML3, AGD11	calmodulin-like 3, ARF-GAP dom...		Lus10038088 [exp]	24.4	0.8770

Compare expression of checked genes

Lus10014398 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.