Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G53130 851 / 0 CYP97C1, LUT1 LUTEIN DEFICIENT 1, CYTOCHROME P450 97C1, Cytochrome P450 superfamily protein (.1) AT1G31800 447 / 6e-151 CYP97A3, LUT5 LUTEIN DEFICIENT 5, "cytochrome P450, family 97, subfamily A, polypeptide 3", cytochrome P450, family 97, subfamily A, polypeptide 3 (.1) AT4G15110 402 / 1e-133 CYP97B3 "cytochrome P450, family 97, subfamily B, polypeptide 3", cytochrome P450, family 97, subfamily B, polypeptide 3 (.1) AT2G44890 152 / 8e-40 CYP704A1 "cytochrome P450, family 704, subfamily A, polypeptide 1", cytochrome P450, family 704, subfamily A, polypeptide 1 (.1.2) AT2G45510 148 / 3e-38 CYP704A2 "cytochrome P450, family 704, subfamily A, polypeptide 2", cytochrome P450, family 704, subfamily A, polypeptide 2 (.1) AT2G26710 145 / 3e-37 CYP72B1, CYP734A1, BAS1 PHYB ACTIVATION TAGGED SUPPRESSOR 1, Cytochrome P450 superfamily protein (.1) AT3G14620 137 / 1e-34 CYP72A8 "cytochrome P450, family 72, subfamily A, polypeptide 8", cytochrome P450, family 72, subfamily A, polypeptide 8 (.1) AT3G14630 135 / 9e-34 CYP72A9 "cytochrome P450, family 72, subfamily A, polypeptide 9", cytochrome P450, family 72, subfamily A, polypeptide 9 (.1) AT2G23180 132 / 6e-33 CYP96A1 "cytochrome P450, family 96, subfamily A, polypeptide 1", cytochrome P450, family 96, subfamily A, polypeptide 1 (.1) AT2G21910 129 / 7e-32 CYP96A5 "cytochrome P450, family 96, subfamily A, polypeptide 5", cytochrome P450, family 96, subfamily A, polypeptide 5 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023891 [exp] 1088 / 0 AT3G53130 852 / 0.0 LUTEIN DEFICIENT 1, CYTOCHROME P450 97C1, Cytochrome P450 superfamily protein (.1) Lus10020380 [exp] 449 / 4e-151 AT1G31800 905 / 0.0 LUTEIN DEFICIENT 5, "cytochrome P450, family 97, subfamily A, polypeptide 3", cytochrome P450, family 97, subfamily A, polypeptide 3 (.1) Lus10039040 [exp] 394 / 2e-130 AT4G15110 880 / 0.0 "cytochrome P450, family 97, subfamily B, polypeptide 3", cytochrome P450, family 97, subfamily B, polypeptide 3 (.1) Lus10017595 [exp] 145 / 2e-37 AT5G38450 697 / 0.0 "cytochrome P450, family 735, subfamily A, polypeptide 1", cytochrome P450, family 735, subfamily A, polypeptide 1 (.1) Lus10009232 [exp] 144 / 5e-36 AT2G45510 639 / 0.0 "cytochrome P450, family 704, subfamily A, polypeptide 2", cytochrome P450, family 704, subfamily A, polypeptide 2 (.1) Lus10033555 [exp] 142 / 5e-36 AT5G38450 694 / 0.0 "cytochrome P450, family 735, subfamily A, polypeptide 1", cytochrome P450, family 735, subfamily A, polypeptide 1 (.1) Lus10038896 [exp] 139 / 7e-35 AT2G45510 582 / 0.0 "cytochrome P450, family 704, subfamily A, polypeptide 2", cytochrome P450, family 704, subfamily A, polypeptide 2 (.1) Lus10033044 [exp] 137 / 3e-34 AT2G26710 803 / 0.0 PHYB ACTIVATION TAGGED SUPPRESSOR 1, Cytochrome P450 superfamily protein (.1) Lus10037999 [exp] 137 / 4e-34 AT2G45510 539 / 0.0 "cytochrome P450, family 704, subfamily A, polypeptide 2", cytochrome P450, family 704, subfamily A, polypeptide 2 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G119800 [exp] 894 / 0 AT3G53130 834 / 0.0 LUTEIN DEFICIENT 1, CYTOCHROME P450 97C1, Cytochrome P450 superfamily protein (.1) Potri.013G088100 [exp] 456 / 5e-154 AT1G31800 921 / 0.0 LUTEIN DEFICIENT 5, "cytochrome P450, family 97, subfamily A, polypeptide 3", cytochrome P450, family 97, subfamily A, polypeptide 3 (.1) Potri.006G006200 [exp] 411 / 5e-137 AT4G15110 877 / 0.0 "cytochrome P450, family 97, subfamily B, polypeptide 3", cytochrome P450, family 97, subfamily B, polypeptide 3 (.1) Potri.017G114200 [exp] 154 / 3e-40 AT5G38450 724 / 0.0 "cytochrome P450, family 735, subfamily A, polypeptide 1", cytochrome P450, family 735, subfamily A, polypeptide 1 (.1) Potri.004G100400 [exp] 152 / 6e-40 AT5G38450 734 / 0.0 "cytochrome P450, family 735, subfamily A, polypeptide 1", cytochrome P450, family 735, subfamily A, polypeptide 1 (.1) Potri.010G139600 [exp] 147 / 4e-38 AT2G26710 395 / 6e-133 PHYB ACTIVATION TAGGED SUPPRESSOR 1, Cytochrome P450 superfamily protein (.1) Potri.018G070900 [exp] 146 / 9e-38 AT2G26710 796 / 0.0 PHYB ACTIVATION TAGGED SUPPRESSOR 1, Cytochrome P450 superfamily protein (.1) Potri.014G072000 [exp] 138 / 7e-35 AT2G45510 706 / 0.0 "cytochrome P450, family 704, subfamily A, polypeptide 2", cytochrome P450, family 704, subfamily A, polypeptide 2 (.1) Potri.019G014407 [exp] 137 / 2e-34 AT2G26710 389 / 3e-130 PHYB ACTIVATION TAGGED SUPPRESSOR 1, Cytochrome P450 superfamily protein (.1) Potri.011G098800 [exp] 134 / 2e-33 AT3G14690 640 / 0.0 "cytochrome P450, family 72, subfamily A, polypeptide 15", cytochrome P450, family 72, subfamily A, polypeptide 15 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00067 [flax] [poplar] p450 Cytochrome P450
Representative CDS sequence Show only first row Show all	>Lus10014399 pacid=23143746 polypeptide=Lus10014399 locus=Lus10014399.g ID=Lus10014399.BGIv1.0 annot-version=v1.0 ATGGCGTTCACCGCCATAGCTTCTCCGTCCTCCATTTCTCCTTTCCTCAACACTCGTCCTCTCCACAAACTCGACAGTAGCTATTTCAAATCCTACCACA ACCTCACAATCAAATCCTCCTTGGACGAGAAGTCTCCTTCGAAATCCACCACCGGAAAACAAAGCTCCTGGGTCAGCCCCGACTGGCTGACATCTCTAAC TCGCTCCATATCTTCGAAGCAAAACGATGACTCCGGCATCCCGATAGCCAGCGCTAAGCTCGAGGACGTCGGGGACCTCCTCGGCGGCGCTCTCTTCTTG CCTCTCTTCAAGTGGATGAACGAGTATGGTCCAATATACCGCCTCGCTGCCGGTCCTAGGGATTTCGTGGTGGTTAGCGACCCCGCCATTGCCAAGCATG TCTTGAGGAATTACGGCACGAAGTACTCGAAAGGACTGGTAGCTGAGGTCTCGGAGTTCCTGTTCGGGTCGGGTTTCGCAATTGCTGAGGGCCAGCTTTG GACGGCGAGGAGGAGGGCGGTGGTTCCGTCGCTGCACAAGAAGTATTTGTCCGTGATTGTGGATAAGGTGTTCTGCAAATGTGCTCAGAGGATGGTGGAT CAGCTACAAGCCGATGCATTGAGTGGAAATGGAGTGAATATGGAGGCGAAGTTTTCTCAGCTGACTCTTGATGTTATTGGGTTGTCTGTGTTTAACTATA ATTTCGACGCGTTGAATTCTGATAGTCCGGTGATTGATGCTGTTTACACTGCTTTGAAAGAAGCTGAAGCTCGCTCCACTGATCTTTTGCCCTATTGGAA GGCTAGTTTTTTTTTTTGGTTCTTGTATTTGTGTTGTTTTGTTTTCTCTGGTTTTTGCTGGGTTATGATTAAACCTCTGTGCAAGATAATACCGAGACAG ATTAAAGCTGAGAATGCCGTCACGGTTATAAGGCAAACTGTTGAAGAACTCATTGCGAAATGCAAAGAGATGGTTGAAAGTGAGGGTGAGAGGATAGATG GGGAGGAATATGTCAATGATGCTGATCCAAGCATTCTTCGGTTCTTGCTTGCCAGCAGAGAAGAGGTTTCGAGTGTACAATTACGAGATGATCTTCTATC AATGCTAGTTGCTGGACATGAGACTACAGGATCAGTTCTCACCTGGACATTGTACCTCCTCAGTAAGGACTCTTCTGCATTGATGAAAGCGCAACAGGAA GTTGATAGAGTACTACAGGGACGACCCCCGACCTATGAAGATGTTAAGAATCTAAAGTTTGTGAACCTCTGCATAATTGAGTCTCTGCGTCTTTATCCAC ATCCTCCTGTATTACTAAGGCGTGCTCAGGTTCCGGATGTGCTTCCAGGCGATTACAAGGTCAATCCTGGTCAAGACATAATGATTTCAGTATACAATAT ACATCATTCCTCCAAGGTATGGGAGAGAGCAGAAGAGTTCATCCCAGAGAGATTCGACACAGAAGGCCCTGTTCCAAACGAATCAAACACAGATTTCAGG TTCATTCCGTTCAGTGGAGGACCCCGCAAGTGCGTTGGAGACCAATTTGCTCTACTGGAAGCCATCGTTGCCCTTACTATTTTCCTCCAGAAAATGAACT TCGAGCTTGTCCCCGACCAGAAAATCAATATGACGACCGGAGCAACAATACACACCACGAATGGACTGTACATGAAACTCAGCCAAAGGCAACCTACCCA AGCTGTAGCATCCTTAGCCTTTTCAAGTTTGAAAAACCTCTGTGAGATTAGATGCATACCCCTTGCATAA
AA sequence Show only first row Show all	>Lus10014399 pacid=23143746 polypeptide=Lus10014399 locus=Lus10014399.g ID=Lus10014399.BGIv1.0 annot-version=v1.0 MAFTAIASPSSISPFLNTRPLHKLDSSYFKSYHNLTIKSSLDEKSPSKSTTGKQSSWVSPDWLTSLTRSISSKQNDDSGIPIASAKLEDVGDLLGGALFL PLFKWMNEYGPIYRLAAGPRDFVVVSDPAIAKHVLRNYGTKYSKGLVAEVSEFLFGSGFAIAEGQLWTARRRAVVPSLHKKYLSVIVDKVFCKCAQRMVD QLQADALSGNGVNMEAKFSQLTLDVIGLSVFNYNFDALNSDSPVIDAVYTALKEAEARSTDLLPYWKASFFFWFLYLCCFVFSGFCWVMIKPLCKIIPRQ IKAENAVTVIRQTVEELIAKCKEMVESEGERIDGEEYVNDADPSILRFLLASREEVSSVQLRDDLLSMLVAGHETTGSVLTWTLYLLSKDSSALMKAQQE VDRVLQGRPPTYEDVKNLKFVNLCIIESLRLYPHPPVLLRRAQVPDVLPGDYKVNPGQDIMISVYNIHHSSKVWERAEEFIPERFDTEGPVPNESNTDFR FIPFSGGPRKCVGDQFALLEAIVALTIFLQKMNFELVPDQKINMTTGATIHTTNGLYMKLSQRQPTQAVASLAFSSLKNLCEIRCIPLA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G53130		CYP97C1, LUT1	LUTEIN DEFICIENT 1, CYTOCHROME...		Lus10014399 [exp]	0	1
AT3G53130		CYP97C1, LUT1	LUTEIN DEFICIENT 1, CYTOCHROME...		Lus10023891 [exp]	2.0	0.9396
AT1G29700			Metallo-hydrolase/oxidoreducta...		Lus10021698 [exp]	4.2	0.8851
AT1G67840		CSK	chloroplast sensor kinase (.1....		Lus10011413 [exp]	7.3	0.8883
AT1G44575		CP22, PSBS, NPQ...	PHOTOSYSTEM II SUBUNIT S, NONP...		Lus10029680 [exp]	9.8	0.9076
AT5G22830		MRS2-11, GMN10,...	MAGNESIUM TRANSPORTER 10, magn...		Lus10020517 [exp]	10.0	0.8955
AT5G22620			phosphoglycerate/bisphosphogly...		Lus10020553 [exp]	12.1	0.9017
AT4G31780		UGT81A1, EMB279...	UDP-glycosyl transferase 81A1,...		Lus10026895 [exp]	12.6	0.8608
AT5G05580		AtFAD8, SH1, FA...	fatty acid desaturase 8 (.1.2)		Lus10005039 [exp]	12.6	0.8835
AT5G22830		MRS2-11, GMN10,...	MAGNESIUM TRANSPORTER 10, magn...		Lus10005365 [exp]	15.0	0.8876
AT2G42130			Plastid-lipid associated prote...		Lus10021055 [exp]	15.3	0.8912

Compare expression of checked genes

Lus10014399 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.