Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G53140 562 / 0 O-methyltransferase family protein (.1) AT5G54160 250 / 1e-80 ATOMT1 O-methyltransferase 1 (.1) AT1G51990 206 / 2e-63 O-methyltransferase family protein (.1.2) AT1G77520 204 / 2e-62 O-methyltransferase family protein (.1) AT1G33030 198 / 1e-60 O-methyltransferase family protein (.1) AT1G63140 174 / 8e-51 O-methyltransferase family protein (.1.2) AT1G77530 173 / 1e-50 O-methyltransferase family protein (.1) AT5G53810 173 / 1e-50 O-methyltransferase family protein (.1) AT1G21130 168 / 7e-49 IGMT4 indole glucosinolate O-methyltransferase 4, O-methyltransferase family protein (.1.2) AT1G21100 164 / 3e-47 IGMT1 indole glucosinolate O-methyltransferase 1, O-methyltransferase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023892 [exp] 714 / 0 AT3G53140 560 / 0.0 O-methyltransferase family protein (.1) Lus10032929 [exp] 251 / 9e-81 AT5G54160 601 / 0.0 O-methyltransferase 1 (.1) Lus10015576 [exp] 244 / 4e-78 AT5G54160 595 / 0.0 O-methyltransferase 1 (.1) Lus10005133 [exp] 210 / 6e-65 AT5G54160 381 / 1e-131 O-methyltransferase 1 (.1) Lus10006146 [exp] 209 / 2e-64 AT5G54160 338 / 5e-115 O-methyltransferase 1 (.1) Lus10002667 [exp] 208 / 4e-64 AT5G54160 368 / 1e-126 O-methyltransferase 1 (.1) Lus10009442 [exp] 202 / 5e-62 AT1G33030 320 / 9e-108 O-methyltransferase family protein (.1) Lus10002669 [exp] 202 / 5e-62 AT5G54160 376 / 5e-130 O-methyltransferase 1 (.1) Lus10014825 [exp] 168 / 8e-49 AT1G33030 270 / 8e-89 O-methyltransferase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G120000 [exp] 602 / 0 AT3G53140 575 / 0.0 O-methyltransferase family protein (.1) Potri.012G006400 [exp] 249 / 3e-80 AT5G54160 605 / 0.0 O-methyltransferase 1 (.1) Potri.002G180600 [exp] 244 / 3e-78 AT5G54160 413 / 2e-144 O-methyltransferase 1 (.1) Potri.002G180433 [exp] 243 / 8e-78 AT5G54160 412 / 4e-144 O-methyltransferase 1 (.1) Potri.002G180500 [exp] 243 / 9e-78 AT5G54160 412 / 6e-144 O-methyltransferase 1 (.1) Potri.002G180466 [exp] 243 / 9e-78 AT5G54160 412 / 6e-144 O-methyltransferase 1 (.1) Potri.015G003100 [exp] 242 / 3e-77 AT5G54160 583 / 0.0 O-methyltransferase 1 (.1) Potri.014G106600 [exp] 240 / 2e-76 AT5G54160 416 / 3e-145 O-methyltransferase 1 (.1) Potri.002G180700 [exp] 237 / 9e-76 AT5G54160 393 / 8e-137 O-methyltransferase 1 (.1) Potri.001G451100 [exp] 217 / 2e-67 AT5G54160 384 / 7e-133 O-methyltransferase 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF00891 [flax] [poplar] Methyltransf_2 O-methyltransferase domain CL0123 [flax] [poplar] HTH PF08100 [flax] [poplar] Dimerisation Dimerisation domain
Representative CDS sequence Show only first row Show all	>Lus10014400 pacid=23143737 polypeptide=Lus10014400 locus=Lus10014400.g ID=Lus10014400.BGIv1.0 annot-version=v1.0 ATGGCAGACGAGATATCGGATAGCCGGAAAACAGCCAGGCTTGCGATATTCGAGCTGGCGAACATGATCAGCGTCCCTATGTCGCTGAACGCCGTTGTGC GGCTCAACGTTGCCGATGCACTCTGGCAAGGCGGATCCAACTCCCCTCTCTCTGCCGCCGAGATCCTCTCCCGTCTTCCTTCCTCGACTGCCACCGCTGA CTCGGAGAACCTCCAGCGTATCCTCCGTTTGCTCTCTTCGTATGGCGTATTCGACGAGCACATAGTAGCCGGCGGCAGCGGCGGCGAGAGGAAATACTCG CTGACTGAGATCGGGAAAACGCTCGTCACGGATTCCGATGGACTGTCATATGGGCCTTACGTTCTCCAACATCACCAGGACGCGCTGATGAGAGCGTGGC CATTGGTCCACGAGGCGGTGGTGGACTCCACGACAGAGCCGTTCGTGAAGGCGAACGGCGAGCCCGCGTACGACCACTACGGGAAGCAGCCGGAGATGAA CGAGCTGATGCTGAAGGCAATGTCCGGAGTATCGGTGCCGTTCATGAAATCAATGCTGGAGGGTTACAGAGGATTTGACGGCGTTAAGAGATTGGTTGAC GTCGGCGGGAGTGCAGGGGATTGCCTGCGGATGATCCTGCGCAAGTTTCCCTGCGTTGAAGAAGGGATCAACTTTGATTTGCCTGAAGTTGTTGCCAAAG CCCCCTCCATTCAAGGAGTAACGCACGTGGGTGGCGACATGTTCAAGTCCATACCTACGGCCGATGCCATCTTCATGAAGTGGATCCTGACGACATGGAC GGACGAGGAATGCAAGGCGATAATGAAGAACTGTTACAACGCGCTTCCACAAGGAGGAAAGCTGATCGCGTGCGAGCCGGTGCTGCCTAACGACTCGGAC GACAGTCACCGGACTCGAGCTCTTCTAGAAGGCGACATATTCGTGATGACCATCTACAGGGCCAAGGGGAAGCACAGGACTGAAGAGGAGTTCAGGCAGC TCGGTCTGGCCGTTGGTTTCTCGGAGTTGAAGGCTTCGTACTTCGTGGATTACTTCTACTCTGTGCTGGAGTTCCAAAAATAA
AA sequence Show only first row Show all	>Lus10014400 pacid=23143737 polypeptide=Lus10014400 locus=Lus10014400.g ID=Lus10014400.BGIv1.0 annot-version=v1.0 MADEISDSRKTARLAIFELANMISVPMSLNAVVRLNVADALWQGGSNSPLSAAEILSRLPSSTATADSENLQRILRLLSSYGVFDEHIVAGGSGGERKYS LTEIGKTLVTDSDGLSYGPYVLQHHQDALMRAWPLVHEAVVDSTTEPFVKANGEPAYDHYGKQPEMNELMLKAMSGVSVPFMKSMLEGYRGFDGVKRLVD VGGSAGDCLRMILRKFPCVEEGINFDLPEVVAKAPSIQGVTHVGGDMFKSIPTADAIFMKWILTTWTDEECKAIMKNCYNALPQGGKLIACEPVLPNDSD DSHRTRALLEGDIFVMTIYRAKGKHRTEEEFRQLGLAVGFSELKASYFVDYFYSVLEFQK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G53140			O-methyltransferase family pro...		Lus10014400 [exp]	0	1
AT2G21240	BBR_BPC	BPC4, BBR/BPC4,...	basic pentacysteine 4 (.1.2)		Lus10042056 [exp]	1.4	0.7950
AT4G38650			Glycosyl hydrolase family 10 p...		Lus10034490 [exp]	2.6	0.8245
AT3G07750			3'-5'-exoribonuclease family p...		Lus10001747 [exp]	5.5	0.7619
AT2G06925		ATSPLA2-ALPHA, ...	PHOSPHOLIPASE A2-ALPHA, Phosph...		Lus10011960 [exp]	8.9	0.7635
AT3G03770			Leucine-rich repeat protein ki...		Lus10033407 [exp]	22.0	0.7730
AT2G47640			Small nuclear ribonucleoprotei...		Lus10013840 [exp]	23.6	0.7509
AT1G65900			unknown protein		Lus10020799 [exp]	25.5	0.7839
AT5G17660			tRNA (guanine-N-7) methyltrans...		Lus10015923 [exp]	29.1	0.6977
AT5G48470			unknown protein		Lus10038234 [exp]	31.7	0.7092
AT1G30130			unknown protein		Lus10042821 [exp]	34.6	0.7214

Compare expression of checked genes

Lus10014400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.