Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G53150 526 / 0 UGT73D1 UDP-glucosyl transferase 73D1 (.1) AT2G36780 464 / 7e-160 UDP-Glycosyltransferase superfamily protein (.1) AT2G36800 459 / 5e-158 UGT73C5, DOGT1 UDP-GLUCOSYL TRANSFERASE 73C5, don-glucosyltransferase 1 (.1) AT2G36770 458 / 1e-157 UDP-Glycosyltransferase superfamily protein (.1) AT2G36760 456 / 7e-157 UGT73C2 UDP-glucosyl transferase 73C2 (.1) AT2G36750 454 / 5e-156 UGT73C1, UGT72C1 UDP-glucosyl transferase 73C1 (.1) AT3G53160 453 / 1e-155 UGT73C7 UDP-glucosyl transferase 73C7 (.1) AT2G36790 443 / 1e-151 UGT73C6 UDP-glucosyl transferase 73C6 (.1) AT2G15480 366 / 2e-121 UGT73B5 UDP-glucosyl transferase 73B5 (.1.2) AT2G15490 365 / 2e-121 UGT73B4 UDP-glycosyltransferase 73B4 (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014402 [exp] 439 / 4e-150 AT2G36780 474 / 3e-164 UDP-Glycosyltransferase superfamily protein (.1) Lus10003323 [exp] 436 / 1e-148 AT2G36800 493 / 2e-171 UDP-GLUCOSYL TRANSFERASE 73C5, don-glucosyltransferase 1 (.1) Lus10016268 [exp] 430 / 2e-146 AT2G36780 498 / 1e-173 UDP-Glycosyltransferase superfamily protein (.1) Lus10014437 [exp] 427 / 6e-145 AT2G36780 545 / 0.0 UDP-Glycosyltransferase superfamily protein (.1) Lus10003322 [exp] 415 / 1e-140 AT2G36780 468 / 9e-162 UDP-Glycosyltransferase superfamily protein (.1) Lus10023893 [exp] 413 / 6e-140 AT2G36780 495 / 1e-172 UDP-Glycosyltransferase superfamily protein (.1) Lus10027739 [exp] 412 / 2e-139 AT2G36780 453 / 2e-156 UDP-Glycosyltransferase superfamily protein (.1) Lus10012011 [exp] 411 / 3e-139 AT2G36780 488 / 8e-170 UDP-Glycosyltransferase superfamily protein (.1) Lus10014403 [exp] 402 / 1e-135 AT2G36780 506 / 6e-177 UDP-Glycosyltransferase superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G120600 [exp] 639 / 0 AT3G53150 617 / 0.0 UDP-glucosyl transferase 73D1 (.1) Potri.016G097400 [exp] 638 / 0 AT3G53150 626 / 0.0 UDP-glucosyl transferase 73D1 (.1) Potri.012G048700 [exp] 450 / 1e-154 AT2G36800 550 / 0.0 UDP-GLUCOSYL TRANSFERASE 73C5, don-glucosyltransferase 1 (.1) Potri.009G098966 [exp] 378 / 2e-126 AT4G34131 588 / 0.0 UDP-glucosyl transferase 73B3 (.1) Potri.001G303700 [exp] 376 / 1e-125 AT2G15480 558 / 0.0 UDP-glucosyl transferase 73B5 (.1.2) Potri.001G303300 [exp] 374 / 7e-125 AT2G15480 555 / 0.0 UDP-glucosyl transferase 73B5 (.1.2) Potri.001G303600 [exp] 372 / 3e-124 AT4G34131 568 / 0.0 UDP-glucosyl transferase 73B3 (.1) Potri.009G099032 [exp] 372 / 7e-124 AT2G15490 558 / 0.0 UDP-glycosyltransferase 73B4 (.1.2.3) Potri.009G098400 [exp] 369 / 8e-123 AT2G15490 505 / 8e-177 UDP-glycosyltransferase 73B4 (.1.2.3) Potri.001G303000 [exp] 369 / 8e-123 AT4G34131 573 / 0.0 UDP-glucosyl transferase 73B3 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0113 [flax] [poplar] GT-B PF00201 [flax] [poplar] UDPGT UDP-glucoronosyl and UDP-glucosyl transferase
Representative CDS sequence Show only first row Show all	>Lus10014401 pacid=23143709 polypeptide=Lus10014401 locus=Lus10014401.g ID=Lus10014401.BGIv1.0 annot-version=v1.0 ATGGCACCGGGTCGGGTCATGGACACACCCACCCAACTCCCATGCCCTCCTCCTCCACCTCCACCACCACACTTCATCCTTTTCCCCCTCATGACTCAAG GGCACACCATCCCAATCATCGACATGGCTCGCCTACTCACCGACCGGGGTTGCCTCGTAACCATCGTCACAACTCCCCTAAACTCGACCCGGTTCGAACC CACCATCCACCGAGCCAACAACCACAAACACAACCCAAACCTTCATCCAATCCGCCTCATCAAACTGACATTTCCTTGCGAACAAGTCGGCCTCCCTCAG GGCTACGAGAACCTCGACGTCCTCCCTTCCCCCGTCTTCCTCAAGAGGTTCTATGACGCCCTCGAATTGCTCGAGGAGCCGCTCGAGTCCGAGCTCCAAC GACTCGTGCAGGCCCCTAGCTGTCTGATCTCTGACCGTTGCTTGTCGTGGACGGCTAGGCTGGCCGAACGGCTGGGAATACCGAGGATCGTGTTCCATGG GATGTCGTGCTTCTCTTTGTTGAGTGCGCTGAATATACGGAAGACTAACGCTCACCTTTCGTCGGCGGATGAGTATGAGCCGTTTCTTGTACCAGGTATG CCGAAGTGCTTCCACGTCCACGTGTCACGGGTTCAGCTGCCGGGCTCGTTCGTCCGACTGCCGGATTTAGACGACGTGCGGAACAAAATGCAAGAAGCCG AAACGACTTCGTTCGGGGTGGTGGCCAATACCTCCGAAGAGCTCGAGGACGGCTGTGCACAAGAGTATCAAAATGCAATAGGGAAAAAGGTATGGTGCAT AGGCCCGGTTTCCTTGCGCAACACGCATAACCTCGATAAGTTCGACAGAGGAAACAAGCCTTCCATAGACCAATCCCTAGTACTCGAGTGGTTGGGCCAA AGGGAGTGTGGATCGGTAATTTATGCTTGCCTAGGGAGCCTTTGTCGCCTGATTCCCGCCCAACTCATCGAGTTGGGTCTAGGCCTAGAAGCATCGGGAA AACCCTTCATATGGGTGGTGAAAACTGACCAGAGGCCAACTGAGCTGGAGGATTGGTTGGTTCGATCTGGTTTTGAGGAACGAGTCAAAGGGAGGGGCCT ACTGATCAAAGGGTGGGCCCCACAAGTTTTGATATTGTCTCATGCATCGGTGGGAGGTTTCTTAACACATTGTGGGTGGAACTCAACAGCGGAGGCAATT TCTTGTGGGGTCCCTATGGTAACATGGCCGCTTTTTGCGGAGCAATTCTTAAATGAGAAGTTAGTTGTGGAGATACTAAGTATTGGTGTGAGAATCGGAG TAGAGTCCCCAGTAAGATGGGGGAATGAAGAGACAGTTGGGGTTATGGTGACAAGAGAGGCCGTGGAAAAAGCTGTTACAGCAATCATGAATAATAGTGG AGAAGAAGGAAAAAAGAGAAAGAATCGAATTAAAAAACTAGCGGAGATGACAAACAAATCCATGGGTGATACTGGATCTTCTCATTTAAATTTAACCGAG TTGATTGCCGATGTCGTGAAGCAACAAGGTGCAACACAACATGCACTAGCAAAACATGTTCCTTCGAACAGGTATGACGAACTAAGAAGCTAA
AA sequence Show only first row Show all	>Lus10014401 pacid=23143709 polypeptide=Lus10014401 locus=Lus10014401.g ID=Lus10014401.BGIv1.0 annot-version=v1.0 MAPGRVMDTPTQLPCPPPPPPPPHFILFPLMTQGHTIPIIDMARLLTDRGCLVTIVTTPLNSTRFEPTIHRANNHKHNPNLHPIRLIKLTFPCEQVGLPQ GYENLDVLPSPVFLKRFYDALELLEEPLESELQRLVQAPSCLISDRCLSWTARLAERLGIPRIVFHGMSCFSLLSALNIRKTNAHLSSADEYEPFLVPGM PKCFHVHVSRVQLPGSFVRLPDLDDVRNKMQEAETTSFGVVANTSEELEDGCAQEYQNAIGKKVWCIGPVSLRNTHNLDKFDRGNKPSIDQSLVLEWLGQ RECGSVIYACLGSLCRLIPAQLIELGLGLEASGKPFIWVVKTDQRPTELEDWLVRSGFEERVKGRGLLIKGWAPQVLILSHASVGGFLTHCGWNSTAEAI SCGVPMVTWPLFAEQFLNEKLVVEILSIGVRIGVESPVRWGNEETVGVMVTREAVEKAVTAIMNNSGEEGKKRKNRIKKLAEMTNKSMGDTGSSHLNLTE LIADVVKQQGATQHALAKHVPSNRYDELRS

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G53150		UGT73D1	UDP-glucosyl transferase 73D1 ...		Lus10014401 [exp]	0	1
					Lus10004679 [exp]	1.0	0.9143
AT2G30130	AS2	PCK1, LBD12, AS...	PEACOCK 1, Lateral organ bound...		Lus10017431 [exp]	2.8	0.8935
AT5G26340		ATSTP13, MSS1, ...	SUGAR TRANSPORT PROTEIN 13, Ma...		Lus10021924 [exp]	5.0	0.8896
AT5G48380		BIR1	BAK1-interacting receptor-like...		Lus10036697 [exp]	5.3	0.9126
AT5G24530		DMR6	DOWNY MILDEW RESISTANT 6, 2-ox...		Lus10032930 [exp]	7.3	0.8338
AT5G51160			Ankyrin repeat family protein ...		Lus10034256 [exp]	7.7	0.8965
AT1G55570		SKS12	SKU5 similar 12 (.1)		Lus10010337 [exp]	8.5	0.8120
AT4G12010			Disease resistance protein (TI...		Lus10006789 [exp]	9.7	0.8509
AT1G80600		WIN1	HOPW1-1-interacting 1 (.1)		Lus10031775 [exp]	11.7	0.8158
AT3G54420		ATCHITIV, CHIV,...	CHITINASE CLASS IV, homolog of...		Lus10024366 [exp]	11.7	0.8871

Compare expression of checked genes

Lus10014401 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.