Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G36780 505 / 9e-177 UDP-Glycosyltransferase superfamily protein (.1) AT2G36750 505 / 1e-176 UGT73C1, UGT72C1 UDP-glucosyl transferase 73C1 (.1) AT2G36770 500 / 1e-174 UDP-Glycosyltransferase superfamily protein (.1) AT2G36800 490 / 8e-171 UGT73C5, DOGT1 UDP-GLUCOSYL TRANSFERASE 73C5, don-glucosyltransferase 1 (.1) AT2G36760 479 / 2e-166 UGT73C2 UDP-glucosyl transferase 73C2 (.1) AT2G36790 478 / 3e-166 UGT73C6 UDP-glucosyl transferase 73C6 (.1) AT3G53160 469 / 2e-162 UGT73C7 UDP-glucosyl transferase 73C7 (.1) AT3G53150 448 / 4e-154 UGT73D1 UDP-glucosyl transferase 73D1 (.1) AT2G15490 369 / 1e-123 UGT73B4 UDP-glycosyltransferase 73B4 (.1.2.3) AT2G15480 359 / 1e-119 UGT73B5 UDP-glucosyl transferase 73B5 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023893 [exp] 938 / 0 AT2G36780 495 / 1e-172 UDP-Glycosyltransferase superfamily protein (.1) Lus10014404 [exp] 578 / 0 AT2G36760 507 / 4e-177 UDP-glucosyl transferase 73C2 (.1) Lus10023894 [exp] 576 / 0 AT2G36780 516 / 0.0 UDP-Glycosyltransferase superfamily protein (.1) Lus10016268 [exp] 480 / 2e-166 AT2G36780 498 / 1e-173 UDP-Glycosyltransferase superfamily protein (.1) Lus10003323 [exp] 468 / 8e-162 AT2G36800 493 / 2e-171 UDP-GLUCOSYL TRANSFERASE 73C5, don-glucosyltransferase 1 (.1) Lus10014437 [exp] 461 / 4e-159 AT2G36780 545 / 0.0 UDP-Glycosyltransferase superfamily protein (.1) Lus10012011 [exp] 459 / 1e-158 AT2G36780 488 / 8e-170 UDP-Glycosyltransferase superfamily protein (.1) Lus10014402 [exp] 459 / 2e-158 AT2G36780 474 / 3e-164 UDP-Glycosyltransferase superfamily protein (.1) Lus10003322 [exp] 448 / 5e-154 AT2G36780 468 / 9e-162 UDP-Glycosyltransferase superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G048700 [exp] 536 / 0 AT2G36800 550 / 0.0 UDP-GLUCOSYL TRANSFERASE 73C5, don-glucosyltransferase 1 (.1) Potri.006G120600 [exp] 483 / 7e-168 AT3G53150 617 / 0.0 UDP-glucosyl transferase 73D1 (.1) Potri.016G097400 [exp] 478 / 2e-165 AT3G53150 626 / 0.0 UDP-glucosyl transferase 73D1 (.1) Potri.001G302300 [exp] 414 / 6e-141 AT4G34131 488 / 4e-170 UDP-glucosyl transferase 73B3 (.1) Potri.001G303700 [exp] 403 / 1e-136 AT2G15480 558 / 0.0 UDP-glucosyl transferase 73B5 (.1.2) Potri.001G302400 [exp] 403 / 1e-136 AT2G15490 494 / 1e-172 UDP-glycosyltransferase 73B4 (.1.2.3) Potri.009G098400 [exp] 401 / 8e-136 AT2G15490 505 / 8e-177 UDP-glycosyltransferase 73B4 (.1.2.3) Potri.009G098966 [exp] 400 / 1e-135 AT4G34131 588 / 0.0 UDP-glucosyl transferase 73B3 (.1) Potri.001G303300 [exp] 399 / 4e-135 AT2G15480 555 / 0.0 UDP-glucosyl transferase 73B5 (.1.2) Potri.009G099032 [exp] 394 / 2e-133 AT2G15490 558 / 0.0 UDP-glycosyltransferase 73B4 (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0113 [flax] [poplar] GT-B PF00201 [flax] [poplar] UDPGT UDP-glucoronosyl and UDP-glucosyl transferase
Representative CDS sequence Show only first row Show all	>Lus10014403 pacid=23143712 polypeptide=Lus10014403 locus=Lus10014403.g ID=Lus10014403.BGIv1.0 annot-version=v1.0 ATGGCCCTTCATTTTGTGTTGACTCCTTTTATGGCCCAAGGTCATTTGATCCCCATGATCGACATAGCCAAACTCTTGGCTCAACACGGCGTTGTGGTGA CCGTGATCACTACACCGGTCAACGCGGACAGGGTCCGATCAACGCTCACACGTGCCATCGAACTATCGGGTGCCCAAATAAGTGTGAAAGAAGTTGACTT TCCATGGAAAGAAGTTGGGCTGCCTAAAAGCTGTGAAAATTTGGACCAACTCCCTTCGTTGGGCCTGGCGGGCAGTTTTATGGACAAGGGAGATGAATTG CTTCAACGGGCCGTGGAGAAGATATTTGAAGAGCTTAGGCCCAAGCCCAACTGCATAATATCCGACATGTCTTTCCCTTACACTAGCTTCCTAGCACAAA AGCATGGCATTCCTAGAATTAGCTTCAATGGGTTCTCGTCCTTTGCCTGGTTGTGCATATGTAACATGGGGATTAGTATCAAGGAAGGGTTCCTCAACGG GGTGTCTTCCGATTGCGAACCGTTTTTGGTGCCAGGGATGCCACATCGGGTCGAGTTGACAAATGACAAGTTACCCTTCGACATGATTAAAGGGATGGAC CAATTTAACCAAAGATATGAAGCAGCGGAGGCCTTATCTTATGGTACAATTTTCAACTCGTTCGAAGAGTTGGAGCATGAGTACCTCTCAGTTTTTAAAG GAACAATGGGACGGAAAGCCTGGTGTGTCGGCCCGGTCTCTTTGTGCAACAAGGGGGAAATGGATCAATTTCACAGGGGTAATCAAAATTCAAGTGATGG ATCCAAATGCTTGAAGTGGCTCGACTCGCAAGAGTCCGACTCAGTTGTTTACATATGCTTAGGAAGCATATGTAACATCTCGACTTCACAACTGATCGAG CTCGGGTTGGGGTTGGAAGCATCAAAGCGAACTTTTATGTGGGCGATAAGGGATGGCGAGGCCTCCAACGGACTGCTGGAATGGATGGAAGAACACGGTT TTGATGAGAGGATCAAAGACCGAGGGTTAGTGATCCGTGGGTGGGCACCACAAGTAGCTATTCTCTCTCACTCCGCCATCGGTGGGTTCCTGACGCATTG TGGGTGGAATTCCACGTTGGAAGGGATATGCGGTGGCGTGACAATGCTGACATGGCCACTGTTTGCAGAGCAATTTTGCAATGAGAGGCTAGTGGTGGAT GTGTTGAAGATTGGAGTTGAAATTGGAGCCAAACGTAAGGTGAACTGGGGAGAGGAAGAGAAGAACGTGGGGGTAATGGTGAAGAAAGAAGATGTGGTGA AAGGTATAGAAGAATTGATGGGGGGAGGAGATGAAAGGGATAAGAGAAACATTAGGGTTAAAGAGCTTAGTGAAATGGCCAAACTAGCTCTTCAAGATGG AGGGTCTTCATTCATGAACATCGAGATGTTAATTGAAGACATATCTCGTTATGAATCGGGTTTTTAG
AA sequence Show only first row Show all	>Lus10014403 pacid=23143712 polypeptide=Lus10014403 locus=Lus10014403.g ID=Lus10014403.BGIv1.0 annot-version=v1.0 MALHFVLTPFMAQGHLIPMIDIAKLLAQHGVVVTVITTPVNADRVRSTLTRAIELSGAQISVKEVDFPWKEVGLPKSCENLDQLPSLGLAGSFMDKGDEL LQRAVEKIFEELRPKPNCIISDMSFPYTSFLAQKHGIPRISFNGFSSFAWLCICNMGISIKEGFLNGVSSDCEPFLVPGMPHRVELTNDKLPFDMIKGMD QFNQRYEAAEALSYGTIFNSFEELEHEYLSVFKGTMGRKAWCVGPVSLCNKGEMDQFHRGNQNSSDGSKCLKWLDSQESDSVVYICLGSICNISTSQLIE LGLGLEASKRTFMWAIRDGEASNGLLEWMEEHGFDERIKDRGLVIRGWAPQVAILSHSAIGGFLTHCGWNSTLEGICGGVTMLTWPLFAEQFCNERLVVD VLKIGVEIGAKRKVNWGEEEKNVGVMVKKEDVVKGIEELMGGGDERDKRNIRVKELSEMAKLALQDGGSSFMNIEMLIEDISRYESGF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G36780			UDP-Glycosyltransferase superf...		Lus10014403 [exp]	0	1
					Lus10027558 [exp]	1.7	0.8393
AT1G29510		SAUR68	SMALL AUXIN UPREGULATED 68, SA...		Lus10007068 [exp]	2.0	0.7863
AT3G05950			RmlC-like cupins superfamily p...		Lus10026962 [exp]	5.0	0.7480
AT4G21020			Late embryogenesis abundant pr...		Lus10014004 [exp]	8.2	0.7665
AT1G54870			NAD(P)-binding Rossmann-fold s...		Lus10004471 [exp]	9.5	0.6554
AT4G15440		CYP74B2, HPL1	hydroperoxide lyase 1 (.1)		Lus10035294 [exp]	11.0	0.6280
AT4G16260			Glycosyl hydrolase superfamily...		Lus10039233 [exp]	12.0	0.7213
AT5G27260			unknown protein		Lus10007133 [exp]	14.3	0.7789
AT3G13790		ATCWINV1, ATBFR...	ARABIDOPSIS THALIANA CELL WALL...		Lus10037631 [exp]	15.0	0.5969
AT5G12970			Calcium-dependent lipid-bindin...		Lus10033343 [exp]	15.7	0.5596

Compare expression of checked genes

Lus10014403 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.