Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G36780 449 / 3e-154 UDP-Glycosyltransferase superfamily protein (.1) AT2G36750 447 / 2e-153 UGT73C1, UGT72C1 UDP-glucosyl transferase 73C1 (.1) AT2G36760 444 / 2e-152 UGT73C2 UDP-glucosyl transferase 73C2 (.1) AT2G36800 442 / 2e-151 UGT73C5, DOGT1 UDP-GLUCOSYL TRANSFERASE 73C5, don-glucosyltransferase 1 (.1) AT2G36770 439 / 3e-150 UDP-Glycosyltransferase superfamily protein (.1) AT2G36790 431 / 3e-147 UGT73C6 UDP-glucosyl transferase 73C6 (.1) AT3G53160 424 / 2e-144 UGT73C7 UDP-glucosyl transferase 73C7 (.1) AT3G53150 397 / 1e-133 UGT73D1 UDP-glucosyl transferase 73D1 (.1) AT2G15490 328 / 5e-107 UGT73B4 UDP-glycosyltransferase 73B4 (.1.2.3) AT4G34138 322 / 9e-105 UGT73B1 UDP-glucosyl transferase 73B1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023894 [exp] 822 / 0 AT2G36780 516 / 0.0 UDP-Glycosyltransferase superfamily protein (.1) Lus10023893 [exp] 518 / 0 AT2G36780 495 / 1e-172 UDP-Glycosyltransferase superfamily protein (.1) Lus10014403 [exp] 503 / 2e-175 AT2G36780 506 / 6e-177 UDP-Glycosyltransferase superfamily protein (.1) Lus10014437 [exp] 430 / 2e-146 AT2G36780 545 / 0.0 UDP-Glycosyltransferase superfamily protein (.1) Lus10003322 [exp] 424 / 2e-144 AT2G36780 468 / 9e-162 UDP-Glycosyltransferase superfamily protein (.1) Lus10016268 [exp] 419 / 2e-142 AT2G36780 498 / 1e-173 UDP-Glycosyltransferase superfamily protein (.1) Lus10012011 [exp] 409 / 1e-138 AT2G36780 488 / 8e-170 UDP-Glycosyltransferase superfamily protein (.1) Lus10003323 [exp] 398 / 4e-134 AT2G36800 493 / 2e-171 UDP-GLUCOSYL TRANSFERASE 73C5, don-glucosyltransferase 1 (.1) Lus10027739 [exp] 385 / 3e-129 AT2G36780 453 / 2e-156 UDP-Glycosyltransferase superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G048700 [exp] 491 / 9e-171 AT2G36800 550 / 0.0 UDP-GLUCOSYL TRANSFERASE 73C5, don-glucosyltransferase 1 (.1) Potri.006G120600 [exp] 425 / 6e-145 AT3G53150 617 / 0.0 UDP-glucosyl transferase 73D1 (.1) Potri.016G097400 [exp] 405 / 3e-136 AT3G53150 626 / 0.0 UDP-glucosyl transferase 73D1 (.1) Potri.001G302300 [exp] 361 / 8e-120 AT4G34131 488 / 4e-170 UDP-glucosyl transferase 73B3 (.1) Potri.001G302400 [exp] 356 / 6e-118 AT2G15490 494 / 1e-172 UDP-glycosyltransferase 73B4 (.1.2.3) Potri.009G098400 [exp] 350 / 1e-115 AT2G15490 505 / 8e-177 UDP-glycosyltransferase 73B4 (.1.2.3) Potri.009G099032 [exp] 350 / 2e-115 AT2G15490 558 / 0.0 UDP-glycosyltransferase 73B4 (.1.2.3) Potri.009G098966 [exp] 343 / 8e-113 AT4G34131 588 / 0.0 UDP-glucosyl transferase 73B3 (.1) Potri.001G303600 [exp] 341 / 3e-112 AT4G34131 568 / 0.0 UDP-glucosyl transferase 73B3 (.1) Potri.001G303000 [exp] 340 / 7e-112 AT4G34131 573 / 0.0 UDP-glucosyl transferase 73B3 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0113 [flax] [poplar] GT-B PF00201 [flax] [poplar] UDPGT UDP-glucoronosyl and UDP-glucosyl transferase
Representative CDS sequence Show only first row Show all	>Lus10014404 pacid=23143740 polypeptide=Lus10014404 locus=Lus10014404.g ID=Lus10014404.BGIv1.0 annot-version=v1.0 ATGGCTACCGAAACCCCTCAGCCTCACCCACTCCACTTCGTCCTCATCCCTTTCATGGCTCAAGGCCACTTGCTTCCGATGACCGACATCGCCAAGCTTT TCGCACGACACGGCGTCCTTGTCACCTTCATCACCACTCCGGTCAACGCCGGCCGAGTCCGAGCCACGCTCGCACGTGCCGCGGCGGACTCCCCCGCCGT ACAGATACGTGTGGAGGAAGTCGAGTTCCCATGCGAAGAAGAAGAAGAAGGTGGTGGTGATGGGCTTCTTCTACTGCCTAAGCACTGTGAGAGCTTGGAC CAGCTTCCTTCTTTGGGCCTGGGCTCCAACTTCTACTACTCAACGGACTCACTCAGAAAGCCCGTAGAGAAGCTGTTCAAAGGGCTTCGGCCAAGGCCCA GCTGCGTGGTTTCAGATATGTGCCTTCCGTTCACGGCCCACGTGGCAGAGAAGTTTGGTGTTCCTCGGATTACTTTCAATGGGTTATCCACTTTTACTTT GCTCTGTCTCCGTTACATCCATGTTGATAAAAACATTATGGATGCGGTTGGTTTGGATTCGGAACCGTTCGTCGTGCCGGGGATCCCCGATCGGGTCGAG CTGACGAAGAACCAACTGCCATTGTCCATGACTGACGGGTTGGATCAGTTCGGTCAGCAGCTAGTAGTAGCGGAGGGGTTGTCTTACGGTATGATTGTCA ACTCGTTCGAGGAGTTGGACCCCGAGTATGTTGAGATGTACAAGGTTGCAATGGGAGGTAAAGCATGGTGTGTGGGTCCCGTTTCGTTGGTCAACGAAAG CCAACTCGATAGGCTTCAACGAGGTAATAATGCGCAGTATGCCGATGGTGAATCAGAATGCTTAAAATGGCTCGACTTGCAAAAACCTGATTCCACCATC TATATGTGTCTTGGAAGCATATGTAACATCCCCACCTCGCAGTTAATTGAACTTGCAATGGGCTTGGAAGCTTCAAACTTTCCATTTATTTGGGTCGTCG GGAATAGGGGAGAAGCTTCGGAAGAGTTATGGAAATGGATGGACGAGTACGGTTTTGAGAAAAAGACAAAAGGAAGAGGCTTCTTGATTCGAGGTTGGGC CCCACAAATGGTGATCCTTGCCCACCAAGCGGTTGGAGGGTTCCTCACCCATTGCGGGTGGAATTCCACACTCGAAGGGATATGCGCCGGCGTGACAATG TTGACGTGGCCGCTTTTCGGGGATCAATTTTGCAATGAGAGGTTAATAGTGGACGTGTTGAAGATCGGGATGGGGATCGGGGCAAACAATACAATGAAGT GGGGAGAAGAAAAGAAGGTTGGAGTGCTGGTGAAGAAGGAGAATGTAAAGAAAGGTATAGATGAGTTGATGAGGGAGGGAGAGGAAGGAGATATGAGGAG GAAGAGAGTCAAAGAGTTGAGTGAAAAGTCAAAATTGGCATTGCTAGAAGGAGGGTCTTCCTATGTGAACATTGAGCGTTTGAAACAAGACATCATGGAG CAAACATCCATAAAGTCATGCAAAAAGAATACCGTCGGTCTTTAG
AA sequence Show only first row Show all	>Lus10014404 pacid=23143740 polypeptide=Lus10014404 locus=Lus10014404.g ID=Lus10014404.BGIv1.0 annot-version=v1.0 MATETPQPHPLHFVLIPFMAQGHLLPMTDIAKLFARHGVLVTFITTPVNAGRVRATLARAAADSPAVQIRVEEVEFPCEEEEEGGGDGLLLLPKHCESLD QLPSLGLGSNFYYSTDSLRKPVEKLFKGLRPRPSCVVSDMCLPFTAHVAEKFGVPRITFNGLSTFTLLCLRYIHVDKNIMDAVGLDSEPFVVPGIPDRVE LTKNQLPLSMTDGLDQFGQQLVVAEGLSYGMIVNSFEELDPEYVEMYKVAMGGKAWCVGPVSLVNESQLDRLQRGNNAQYADGESECLKWLDLQKPDSTI YMCLGSICNIPTSQLIELAMGLEASNFPFIWVVGNRGEASEELWKWMDEYGFEKKTKGRGFLIRGWAPQMVILAHQAVGGFLTHCGWNSTLEGICAGVTM LTWPLFGDQFCNERLIVDVLKIGMGIGANNTMKWGEEKKVGVLVKKENVKKGIDELMREGEEGDMRRKRVKELSEKSKLALLEGGSSYVNIERLKQDIME QTSIKSCKKNTVGL

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G36760		UGT73C2	UDP-glucosyl transferase 73C2 ...		Lus10014404 [exp]	0	1
					Lus10037654 [exp]	3.3	0.7310
AT3G57240		BG3	"beta-1,3-glucanase 3", beta-1...		Lus10002807 [exp]	11.0	0.6708
AT3G45140		ATLOX2, LOX2	ARABIODOPSIS THALIANA LIPOXYGE...		Lus10031238 [exp]	14.8	0.6926
AT1G70690		HWI1, PDLP5	PLASMODESMATA-LOCATED PROTEIN ...		Lus10030779 [exp]	17.1	0.6702
AT1G11940			Core-2/I-branching beta-1,6-N-...		Lus10030027 [exp]	27.9	0.6012
AT3G51680		AtSDR2	short-chain dehydrogenase/redu...		Lus10026419 [exp]	38.9	0.6477
AT5G01740			Nuclear transport factor 2 (NT...		Lus10022755 [exp]	59.1	0.5806
AT4G16480		ATINT4	inositol transporter 4 (.1)		Lus10010501 [exp]	98.4	0.5305
AT1G68460		ATIPT1	Arabidopsis thaliana isopenten...		Lus10034334 [exp]	98.8	0.5555
AT4G22285			Ubiquitin C-terminal hydrolase...		Lus10035547 [exp]	109.5	0.5534

Compare expression of checked genes

Lus10014404 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.