Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G55500 300 / 2e-102 ATHEXPALPHA1.7, ATEXP16, ATEXPA16 EXPANSIN 16, expansin A16 (.1) AT2G39700 297 / 2e-101 ATHEXPALPHA1.6, ATEXP4, ATEXPA4 expansin A4 (.1) AT5G02260 292 / 3e-99 ATHEXPALPHA1.10, ATEXP9, ATEXPA9 expansin A9 (.1) AT2G37640 287 / 3e-97 ATHEXPALPHA1.9, ATEXP3, ATEXPA3, EXP3 ARABIDOPSIS THALIANA EXPANSIN A3, EXPANSIN 3, Barwin-like endoglucanases superfamily protein (.1) AT2G28950 271 / 4e-91 ATHEXPALPHA1.8, ATEXP6, ATEXPA6 ARABIDOPSIS THALIANA TEXPANSIN 6, expansin A6 (.1) AT5G05290 265 / 7e-89 ATHEXPALPHA1.12, ATEXP2, ATEXPA2 EXPANSIN 2, expansin A2 (.1) AT2G40610 259 / 2e-86 ATHEXPALPHA1.11, ATEXP8, ATEXPA8 expansin A8 (.1) AT5G56320 259 / 3e-86 ATHEXPALPHA1.5, ATEXP14, ATEXPA14 EXPANSIN 14, expansin A14 (.1) AT2G03090 256 / 2e-85 ATHEXPALPHA1.3, ATEXP15, ATEXPA15 EXPANSIN 15, expansin A15 (.1) AT1G69530 249 / 2e-82 ATHEXPALPHA1.2, AT-EXP1, ATEXP1, ATEXPA1, EXP1 EXPANSIN 1, expansin A1 (.1.2.3.4.5)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027740 [exp] 298 / 1e-101 AT5G02260 265 / 2e-89 expansin A9 (.1) Lus10040801 [exp] 291 / 1e-98 AT2G39700 456 / 1e-164 expansin A4 (.1) Lus10016533 [exp] 290 / 1e-98 AT2G39700 456 / 9e-165 expansin A4 (.1) Lus10023407 [exp] 288 / 2e-97 AT2G39700 445 / 3e-160 expansin A4 (.1) Lus10040286 [exp] 288 / 2e-97 AT2G39700 447 / 4e-161 expansin A4 (.1) Lus10023902 [exp] 283 / 2e-97 AT5G02260 151 / 1e-46 expansin A9 (.1) Lus10024388 [exp] 286 / 5e-97 AT2G37640 430 / 3e-154 ARABIDOPSIS THALIANA EXPANSIN A3, EXPANSIN 3, Barwin-like endoglucanases superfamily protein (.1) Lus10020257 [exp] 270 / 3e-90 AT2G03090 349 / 2e-122 EXPANSIN 15, expansin A15 (.1) Lus10002638 [exp] 270 / 6e-89 AT2G37640 347 / 6e-120 ARABIDOPSIS THALIANA EXPANSIN A3, EXPANSIN 3, Barwin-like endoglucanases superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G097500 [exp] 356 / 4e-124 AT2G39700 301 / 6e-103 expansin A4 (.1) Potri.016G098700 [exp] 323 / 3e-111 AT2G39700 283 / 4e-96 expansin A4 (.1) Potri.008G057100 [exp] 300 / 3e-102 AT2G39700 459 / 6e-166 expansin A4 (.1) Potri.006G086100 [exp] 295 / 1e-100 AT2G37640 435 / 2e-156 ARABIDOPSIS THALIANA EXPANSIN A3, EXPANSIN 3, Barwin-like endoglucanases superfamily protein (.1) Potri.010G202500 [exp] 294 / 5e-100 AT2G39700 473 / 2e-171 expansin A4 (.1) Potri.009G031800 [exp] 293 / 1e-99 AT2G39700 453 / 1e-163 expansin A4 (.1) Potri.001G240900 [exp] 290 / 3e-98 AT2G39700 449 / 6e-162 expansin A4 (.1) Potri.001G001100 [exp] 262 / 1e-87 AT2G03090 375 / 5e-133 EXPANSIN 15, expansin A15 (.1) Potri.008G088300 [exp] 258 / 3e-86 AT1G69530 335 / 3e-117 EXPANSIN 1, expansin A1 (.1.2.3.4.5) Potri.010G167200 [exp] 258 / 6e-86 AT1G69530 335 / 1e-116 EXPANSIN 1, expansin A1 (.1.2.3.4.5)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0159 [flax] [poplar] E-set PF01357 [flax] [poplar] Expansin_C Expansin C-terminal domain CL0199 [flax] [poplar] DPBB PF03330 [flax] [poplar] DPBB_1 Lytic transglycolase
Representative CDS sequence Show only first row Show all	>Lus10014406 pacid=23143705 polypeptide=Lus10014406 locus=Lus10014406.g ID=Lus10014406.BGIv1.0 annot-version=v1.0 ATGAAACTAGCGACCATCTGTACGACGTTGTTGCTGTTGCTAATAATACTGCCAGATTTCTGCAGTGTTAAAGCACAAGAAGATGATTCAGTGAGTCATG CCTTGGGGCGGTTCTCCGAACCACAGAGCCACAACCTTAGGCGAGGCCGACGGCCCAGACTGCCTCCTTTCCGGTCCGGTCCGTGGCAGAGAGCTCACGC CACATTCTATGAAGGCAACACCAGAACTTATGGCGGCGCGTGCGACTACACGGACGTGGTGGGGGAAGGGTACGGGATGAACACGGCGGCGCTGAGCAAC GCTCTCTTCCGAGACGGTAAGAGCTGCGGTGCTTGTTTCCAGATACAGTGCATCGACGACCCACAGTGGTGTAAGCCAGGTCAGCAGTCTCTGTTCGTCA CGGCCACTGATCTCTGCCCTCCCAACCCATTCCAGCCCAGCGACAACGGCGGCTGGTGTAACCCTCCCCGCCAGCATTTCGACATCGCCATGCCCGTCTT CAACCATCTTGCCGAGTACAAGGCCGGAATTATACCCGTCAAGTATCGCAGGGTTCCGTGCAGAAAGAGTGGTGGGATCCGGTACACAATGATGGGCAAC CAGTGGTTCTACGAGGTCGTAGTTTCGAACGTTGGAGGCTCCGGAGACATCGTGGCCGTTCAAGTGAAGGTCGACAACAAACTCCGGTGGATATCGTTGG ATCACGATTGGGGCGCCACTTGGAAAACGGGGTTTCCATTGCAAGGCAAGTCGTTGAGCTTCAGGGTTCGAGGTAGCGACGGAAGGTACTCGACTTCTCC ACACGTCGTCCCGAGTAATTGGCAGTTCGGTCAGACTTTCGAAGGGAAGAACTTCAAATTGAAGAATGGAAGAAGAAAGAAGGATTTTGGCCAAGTTTAA
AA sequence Show only first row Show all	>Lus10014406 pacid=23143705 polypeptide=Lus10014406 locus=Lus10014406.g ID=Lus10014406.BGIv1.0 annot-version=v1.0 MKLATICTTLLLLLIILPDFCSVKAQEDDSVSHALGRFSEPQSHNLRRGRRPRLPPFRSGPWQRAHATFYEGNTRTYGGACDYTDVVGEGYGMNTAALSN ALFRDGKSCGACFQIQCIDDPQWCKPGQQSLFVTATDLCPPNPFQPSDNGGWCNPPRQHFDIAMPVFNHLAEYKAGIIPVKYRRVPCRKSGGIRYTMMGN QWFYEVVVSNVGGSGDIVAVQVKVDNKLRWISLDHDWGATWKTGFPLQGKSLSFRVRGSDGRYSTSPHVVPSNWQFGQTFEGKNFKLKNGRRKKDFGQV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G55500		ATHEXPALPHA1.7,...	EXPANSIN 16, expansin A16 (.1)		Lus10014406 [exp]	0	1
AT5G15630		IRX6, COBL4	IRREGULAR XYLEM 6, COBRA-LIKE4...		Lus10021142 [exp]	2.2	0.9852
AT3G14570		ATGSL4, ATGSL04	glucan synthase-like 4 (.1.2)		Lus10026188 [exp]	2.4	0.9832
					Lus10036765 [exp]	3.2	0.9852
					Lus10006395 [exp]	3.9	0.9852
AT1G54870			NAD(P)-binding Rossmann-fold s...		Lus10034047 [exp]	4.5	0.9435
AT2G16190			unknown protein		Lus10011284 [exp]	4.5	0.9852
AT3G54200			Late embryogenesis abundant (L...		Lus10031554 [exp]	5.0	0.9852
AT3G05210		UVR7, ERCC1	UV REPAIR DEFICIENT 7, nucleot...		Lus10029947 [exp]	5.5	0.9145
AT1G75250	MYB	RSM3, ATRL6	RADIALIS-LIKE SANT/MYB 3, RAD-...		Lus10028306 [exp]	6.0	0.9642
AT4G39250	MYB	RSM2, ATRL1	RADIALIS-LIKE SANT/MYB 2, RAD-...		Lus10023568 [exp]	6.5	0.9651

Compare expression of checked genes

Lus10014406 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.