Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G53180 501 / 1e-164 NodGS nodulin/glutamine synthase-like protein, glutamate-ammonia ligases;catalytics;glutamate-ammonia ligases (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023900 [exp] 649 / 0 AT3G53180 1148 / 0.0 nodulin/glutamine synthase-like protein, glutamate-ammonia ligases;catalytics;glutamate-ammonia ligases (.1) Lus10023904 [exp] 457 / 1e-154 AT3G53180 285 / 3e-89 nodulin/glutamine synthase-like protein, glutamate-ammonia ligases;catalytics;glutamate-ammonia ligases (.1) Lus10023905 [exp] 447 / 1e-150 AT3G53180 403 / 2e-134 nodulin/glutamine synthase-like protein, glutamate-ammonia ligases;catalytics;glutamate-ammonia ligases (.1) Lus10024005 [exp] 378 / 2e-123 AT3G53180 247 / 3e-74 nodulin/glutamine synthase-like protein, glutamate-ammonia ligases;catalytics;glutamate-ammonia ligases (.1) Lus10023906 [exp] 219 / 1e-66 AT3G53180 199 / 2e-60 nodulin/glutamine synthase-like protein, glutamate-ammonia ligases;catalytics;glutamate-ammonia ligases (.1) Lus10023908 [exp] 149 / 4e-42 AT3G53180 115 / 5e-31 nodulin/glutamine synthase-like protein, glutamate-ammonia ligases;catalytics;glutamate-ammonia ligases (.1) Lus10033799 [exp] 95 / 8e-23 AT3G53180 104 / 2e-27 nodulin/glutamine synthase-like protein, glutamate-ammonia ligases;catalytics;glutamate-ammonia ligases (.1) Lus10023907 [exp] 59 / 1e-10 AT3G53180 112 / 5e-30 nodulin/glutamine synthase-like protein, glutamate-ammonia ligases;catalytics;glutamate-ammonia ligases (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G121000 [exp] 533 / 3e-177 AT3G53180 1176 / 0.0 nodulin/glutamine synthase-like protein, glutamate-ammonia ligases;catalytics;glutamate-ammonia ligases (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0286 [flax] [poplar] GCS PF00120 [flax] [poplar] Gln-synt_C Glutamine synthetase, catalytic domain
Representative CDS sequence Show only first row Show all	>Lus10014407 pacid=23143681 polypeptide=Lus10014407 locus=Lus10014407.g ID=Lus10014407.BGIv1.0 annot-version=v1.0 ATGGAGTTCAAGGATTTGAGAAAAGCAGTAAACGATGTGTCCAACGGTTCTTTGAACTTGGACGTCGACAAAGCATCAGAAACCGATGTTTCCCTTGTTC GTCTCATCTGGGTTGATGCAGCCGGCATCCACAGATGCCGAGGTTTTCCTGCAAAGCGCTTCAATAAGGTTGTGACGAAGAGTGGCGCTGGCTTGACTTA CACGTGTATGGCTTTCCCTTCGTACATTGATTCCCCTGCAGAGGGGTGTAACTTAGTTTGCGCCGGTGAGATCAGACTAATGCCTGATCTCTCTACTAAA ACTAAGATCCCATGGATGGAAAGGCAGGAAATGGTTTTGTCAGACATGCATGTCACGCCTGGTGAACCATGGGAGTATTGCCCAAGGGGGACTTTACGGA GGCTCTCGAAAATTCTCAAAGACGAATTCGACTTGAGTGTATCAAGGGATGGGAAAGAAGAATGGGTGCCATTTGAATCAACAGCTTACTGCTCGACGGC AGGATTCGATGCTGCTTCCCCATTATTTCAAGACATGGTCGATGCTCTCGATTTCCTCGATATACCATTCGAACAGGTGCATAAGGAAGCTGGAAAAGGT CAATTGGAGATAGCTCTGGAGTATTCGGCCTGTTTAAATTCTGCAGACAATGTGATTTACTCACGTGAAGTCATTCGCTCGGTAGCAAGGAAACATGGCT ATATTGCCACATTCGTCCCGAAGTATGCATTAGATGATCTCGGTACAGGATCGCACGTCCACTTAAGTCTCGAGAGAAACGGAGAAAATGTATTCATGGG AACTGAAGCTTCATCCTCTCAGCACGGAATTTCGAAGATCGGGAGGGAGTTTATGGCAGGAGTTCTCCACCACATTCCTTCAATTCTAGCCTTCATAGCA CCACTCCATATTAGCTTTTTCTGTTCGACTTTTACCTTTGACTCTCTCACTTCGAACCAGTTCAGCTACGATCGGATTCAACCCAACATGTGGAGCGGAG CGTACCAATGCTGGGGGGAAGAGAACAAGGAAGCAGCACTGCGGACTGCTCGTCCACCGGGCGTCCCAGATGGCCTAGTCAGCAATTTCGAGATCAAGTC CTTTGATGGTTGCGCAAATCCGTACCTCGGCTTGGCTGCTATCCTAGCTGCTGGCATTGATGGTCTCAGGAGGCGTCTCGAACTCCCTGAACCTGTTGGT ATGAACCCTGCCCTCCTCGAAGGAAAGATCCAACGCTTGCCGGGGTCACTCTCCGAGTCCGTGGAGGCTCTCGAAAACGATAGCGTGTTGGATGAGCTGA TCGGGTCGAAACTTTGCGTTGCCATAAAAGCGGTTCGCAAGTTTGAAGTTGGACAGTATGCTGAAGGTTTGAAGGTTGATTGGCACAAAAGTTACTTCCC GTCTGTTGGTAGAATACTGGGAATTGAACGATTTGCGGAGGAAATTCTGGAACAAGAGAATCCGAACGGATCAACCTGGACCTTGGACACTTTCACTGAA GCTTTTGTGGAAAGCTTGAAATCATATCCTTTTGTTGCTAAGGATATTGTTGGTTTGAAGAGCATAGCTGCATACCGTAGTGGTCTAGAGATCAACCCGA AAGTGTCTAGCAAAGATGCTGCGGGAGGTCTTGCTAAAGTAGTACAATCTGAGAACCCTGTGCGGCTAGTGAACAAAAGCCTTATAGACTACATTTTCGT CCGAAGTTTGGAGGTTGCTTTGATCTTTGACTTACCAGTGCAGATAGATACAGGGGAAGCATCGCACCTTGCCTCTGTTTATCCCCAGGTCTATCTCGAC CTTGGGCTGGCAGTTCCTAAACTTAGCAGCCATGTGATGATATCGTCGGTCAAAGAGCTTCTGGAGCTAGCTCCAATAAAGAAGCACAGATGCCGAGCAA GCTTGAAATCATGGATGGAAAAGGAGGAAATGGTTTTGGCTGACATGATTCTCAAGCCTAGTGAACCATGGGAGTATTGCCCTAGAGAGGCTTTACGGAG CGTTTCGAAAGTTCTCAAAGATGAATTCGACTTGGTTATGAATGCAGGATTCGAGAATGAGTTTGTACTCTTAAAGAATGCATCAAGGTATGCACTCGAT GACAACGGTACTGGATCACACGTACATATAAGCCTGTCCCGGAATGGAGAAAACATATTCTTGGGAACCGAAGCTTCTTCCTCTAAGTATGGAATGTCTG GAGTCAGTAGGGAGTTCATGTCCGGAGTTCTCCACCATCTTCCTGCAAACAAGGAAACACCAATTCGGACTGCTCGTTCTCCTGGCATCTCAGACGGCCT AGTCAGCAATTTCGAGATCAAGTGTTTTTATGGTTGCGCCAATCCACACCTCGGCTTGGCTTCCATCCTAGCTGCCGGCATTGATGGCCTCAGGAGACAT CTTATTCTGCCGGAACCTATTGAGACGAATCCTTTCCTCTTAGAAGGGAAGCTCCAACGTTTTCCGCGGTCACTCTCCGAGTATGTGGAAGCTCTCGAAA ATGATAATGTGTTAGATGACCTGATCGGTGGCAACCTTTGTGCTGCGATAAAAGCAGTTAGAAAAGCCGAGATCAAGCACTATTCCGATAACAAGGAGGC TTTCAAGAAAATGATATTCCGTTACTAG
AA sequence Show only first row Show all	>Lus10014407 pacid=23143681 polypeptide=Lus10014407 locus=Lus10014407.g ID=Lus10014407.BGIv1.0 annot-version=v1.0 MEFKDLRKAVNDVSNGSLNLDVDKASETDVSLVRLIWVDAAGIHRCRGFPAKRFNKVVTKSGAGLTYTCMAFPSYIDSPAEGCNLVCAGEIRLMPDLSTK TKIPWMERQEMVLSDMHVTPGEPWEYCPRGTLRRLSKILKDEFDLSVSRDGKEEWVPFESTAYCSTAGFDAASPLFQDMVDALDFLDIPFEQVHKEAGKG QLEIALEYSACLNSADNVIYSREVIRSVARKHGYIATFVPKYALDDLGTGSHVHLSLERNGENVFMGTEASSSQHGISKIGREFMAGVLHHIPSILAFIA PLHISFFCSTFTFDSLTSNQFSYDRIQPNMWSGAYQCWGEENKEAALRTARPPGVPDGLVSNFEIKSFDGCANPYLGLAAILAAGIDGLRRRLELPEPVG MNPALLEGKIQRLPGSLSESVEALENDSVLDELIGSKLCVAIKAVRKFEVGQYAEGLKVDWHKSYFPSVGRILGIERFAEEILEQENPNGSTWTLDTFTE AFVESLKSYPFVAKDIVGLKSIAAYRSGLEINPKVSSKDAAGGLAKVVQSENPVRLVNKSLIDYIFVRSLEVALIFDLPVQIDTGEASHLASVYPQVYLD LGLAVPKLSSHVMISSVKELLELAPIKKHRCRASLKSWMEKEEMVLADMILKPSEPWEYCPREALRSVSKVLKDEFDLVMNAGFENEFVLLKNASRYALD DNGTGSHVHISLSRNGENIFLGTEASSSKYGMSGVSREFMSGVLHHLPANKETPIRTARSPGISDGLVSNFEIKCFYGCANPHLGLASILAAGIDGLRRH LILPEPIETNPFLLEGKLQRFPRSLSEYVEALENDNVLDDLIGGNLCAAIKAVRKAEIKHYSDNKEAFKKMIFRY

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G53180		NodGS	nodulin/glutamine synthase-lik...		Lus10014407 [exp]	0	1
AT5G05180			unknown protein		Lus10034251 [exp]	1.4	0.9384
AT1G32450		NRT1.5	nitrate transporter 1.5 (.1)		Lus10011058 [exp]	2.8	0.9273
AT1G68570			Major facilitator superfamily ...		Lus10034305 [exp]	3.0	0.9040
AT4G33840			Glycosyl hydrolase family 10 p...		Lus10014642 [exp]	3.2	0.9138
AT3G44900		ATCHX4	cation/H+ exchanger 4, cation/...		Lus10032622 [exp]	3.5	0.9240
AT3G15810			Protein of unknown function (D...		Lus10032602 [exp]	4.2	0.9127
AT4G35150			O-methyltransferase family pro...		Lus10006691 [exp]	4.9	0.9068
AT5G05180			unknown protein		Lus10029012 [exp]	5.7	0.8967
AT3G43660			Vacuolar iron transporter (VIT...		Lus10025685 [exp]	5.7	0.9166
AT4G03230			S-locus lectin protein kinase ...		Lus10031592 [exp]	6.3	0.9009

Compare expression of checked genes

Lus10014407 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.