Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G09920 1190 / 0 PIP5K9 phosphatidyl inositol monophosphate 5 kinase (.1.2.3) AT1G60890 744 / 0 Phosphatidylinositol-4-phosphate 5-kinase family protein (.1.2) AT1G10900 738 / 0 Phosphatidylinositol-4-phosphate 5-kinase family protein (.1) AT1G21980 618 / 0 ATPIPK1, ATPIP5K1 phosphatidylinositol-4-phosphate 5-kinase 1 (.1) AT1G77740 605 / 0 PIP5K2 phosphatidylinositol-4-phosphate 5-kinase 2 (.1) AT3G07960 585 / 0 PIP5K6 phosphatidylinositol-4-phosphate 5-kinase 6, Phosphatidylinositol-4-phosphate 5-kinase family protein (.1) AT2G41210 583 / 0 PIP5K5 phosphatidylinositol- 4-phosphate 5-kinase 5 (.1) AT3G56960 569 / 0 PIP5K4 phosphatidyl inositol monophosphate 5 kinase 4 (.1) AT2G26420 504 / 3e-168 PIP5K3 1-phosphatidylinositol-4-phosphate 5-kinase 3 (.1) AT1G01460 268 / 1e-81 ATPIPK11 Phosphatidylinositol-4-phosphate 5-kinase, core (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023909 [exp] 1625 / 0 AT3G09920 1210 / 0.0 phosphatidyl inositol monophosphate 5 kinase (.1.2.3) Lus10022606 [exp] 1343 / 0 AT3G09920 1179 / 0.0 phosphatidyl inositol monophosphate 5 kinase (.1.2.3) Lus10021505 [exp] 1342 / 0 AT3G09920 1180 / 0.0 phosphatidyl inositol monophosphate 5 kinase (.1.2.3) Lus10015456 [exp] 770 / 0 AT1G60890 1036 / 0.0 Phosphatidylinositol-4-phosphate 5-kinase family protein (.1.2) Lus10001377 [exp] 768 / 0 AT1G60890 1044 / 0.0 Phosphatidylinositol-4-phosphate 5-kinase family protein (.1.2) Lus10020821 [exp] 726 / 0 AT1G60890 935 / 0.0 Phosphatidylinositol-4-phosphate 5-kinase family protein (.1.2) Lus10012689 [exp] 719 / 0 AT1G60890 932 / 0.0 Phosphatidylinositol-4-phosphate 5-kinase family protein (.1.2) Lus10018200 [exp] 609 / 0 AT1G21980 1172 / 0.0 phosphatidylinositol-4-phosphate 5-kinase 1 (.1) Lus10025636 [exp] 608 / 0 AT1G21980 1170 / 0.0 phosphatidylinositol-4-phosphate 5-kinase 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G121200 [exp] 1343 / 0 AT3G09920 1230 / 0.0 phosphatidyl inositol monophosphate 5 kinase (.1.2.3) Potri.001G211200 [exp] 778 / 0 AT1G60890 1041 / 0.0 Phosphatidylinositol-4-phosphate 5-kinase family protein (.1.2) Potri.003G019100 [exp] 746 / 0 AT1G60890 1004 / 0.0 Phosphatidylinositol-4-phosphate 5-kinase family protein (.1.2) Potri.002G088100 [exp] 620 / 0 AT1G21980 1136 / 0.0 phosphatidylinositol-4-phosphate 5-kinase 1 (.1) Potri.005G172800 [exp] 619 / 0 AT1G21980 1139 / 0.0 phosphatidylinositol-4-phosphate 5-kinase 1 (.1) Potri.001G027900 [exp] 602 / 0 AT3G07960 1107 / 0.0 phosphatidylinositol-4-phosphate 5-kinase 6, Phosphatidylinositol-4-phosphate 5-kinase family protein (.1) Potri.016G036800 [exp] 597 / 0 AT3G56960 1214 / 0.0 phosphatidyl inositol monophosphate 5 kinase 4 (.1) Potri.003G196000 [exp] 586 / 0 AT3G07960 1094 / 0.0 phosphatidylinositol-4-phosphate 5-kinase 6, Phosphatidylinositol-4-phosphate 5-kinase family protein (.1) Potri.004G139900 [exp] 481 / 6e-159 AT1G21980 948 / 0.0 phosphatidylinositol-4-phosphate 5-kinase 1 (.1) Potri.019G015768 [exp] 478 / 8e-158 AT1G21980 947 / 0.0 phosphatidylinositol-4-phosphate 5-kinase 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF01504 [flax] [poplar] PIP5K Phosphatidylinositol-4-phosphate 5-Kinase CL0251 [flax] [poplar] MORN PF02493 [flax] [poplar] MORN MORN repeat
Representative CDS sequence Show only first row Show all	>Lus10014408 pacid=23143749 polypeptide=Lus10014408 locus=Lus10014408.g ID=Lus10014408.BGIv1.0 annot-version=v1.0 ATGTCTGTTCCATTGGCCAACGTAGAGGGTGTGGGAAGAGGACTTACTTTGTCAGACAGAACAAAATCTGTTGATGCCATCTCCAGTAGAGAATTATCTT CTATTTCAGTCAACGGTGACGTTTCTCACAGGATCTCTGAAAGTGCCGCTTTCAAAATCGGTGAGCTGTTTCTTCCCAATGGAGAATCATATTGTGGGTC ATTGCTGGGAAGTGTACCAGAAGGTACCGGAAAGTATGTTTGGTCAGATGGTTGTATCTACGAGGGTGAATGGAGACGGGGAGCAAGAAATGGAACTGGG AAAATTCAGTGGCCTTCTGGCGCCGCTTACGAAGGTGAATTTTCAGGTGGTTATATGCACGGTGCAGGTAACTACATTGGTGCCAACAACGTAAGCTACA GGGGAAGATGGCGATTGAATCTCAAGCATGGCTTGGGTTATCAAGTTTATCCTAACCGAGATGTCTTTGAAGGTTCTTGGTTACAAGGAACACCAGAAGG GCCTGGAAAGTATAGCTGGGCTAATGGAAATGTATACGTGGGGAACATGAAAGGAGGGAAAATGACAGGGAAAGGAACTCTTACTTGGATGAATGGAGAC TCATTTGAAGGAAGCTGGTTAAATGGGATGATGCATGGATTAGGAGTATATACCTGGACTGATGGTGGTTGCTATGTTGGAACTTGGAGTCATGGTCTGA AGGATGGAAAAGGAACGTTTTATCCATGTGGCAGTCGGTTCCCTTCGGTACAAGAACGATACCTCAATGCACTTCGAAAGAGGGGGTTACTGCCTGATAT GAGAAAGCAGAACCAAGCACATATACACCATGCATCTTCAGGAGATATGGGTAGCGTCAAGGTTGGCAGAGAGCAAAGGTCTCATCGCGATTCATCTGGG AACCTATCCAAGGGAAGCTTGATAAGCTTGGAGCAATCTAGAAACAAAAATGTTTCCTTGGAACGGCGGTGGAGTCTTGAGGTAGCAATTGAAAAGGTGA TTGGACATGATTCATCATTAGAGTCATCTGAATATGATGGAGCAAATGTTCCACCGATCCTGGAAAGAGAATACATGCAAGGTGTTCTGATTAGTGAGAT CGTACTAAATGATAACTTTTCATCGTTGTCCAGAAGTGCAAAACGGCGACAGAAAAAGTTTGTGAGGGAGATCAAGCGGCCTGGCGAAACGATTCTTAAA GGGCATCGCAGTTATGATCTGATGGTCAGTTTGCAGCTCGGTATCAGGTATACTGTTGGAAAAATTACACCTGTTCAAAGACGAGAAGTCCGTGCATCAG ATTTCGGGCCAAGGGCAAGCTTTTGGATGCAATTCCCCAAGGAAGGGTCCCAGCTGACACCACCTCATCGTTCAGATGATTTTAAGTGGAAGGACTACTG CCCAATGGTCTTTAGGAATTTGAGGGAGATGTTCAAGATTGATGCTGCTGATTACATGATATCTATATGTGGAAATGATGCTCTTAGGGAACTATCTTCT CCAGGGAAGAGTGGGAGCATATTTTTCTTGTCTCAAGACGACCGCTTCATGATTAAAACACTCAGGAAGTCTGAAGTCAAGGTACTTCTGGAGATGCTTC CTGATTACCACCACCACGTGAAAAGATACGAAAACACACTGATAACGAAGTTCTTTGGTCTTCATAGAATCAAACCTTCAAGTGGTCAAAAGTTTCGCTT TGTAGTCATGGGAAACATGTTCTGCACAGAGTTGAGAATCCATCGAAGATTTGATCTGAAAGGTTCTTCGCTAGGACGATCTACTGAAAAGATAGAAATC GACGAGAACACAACCCTCAAAGATTTGGATCTGGACTACAGCTTCTATTTAGAACCTTCCTGGAGGGAGTCTCTACTAAAGCAGATAGAGATAGACAGCA AATTTCTGGAAGCACAGCGCATAATGGATTACAGCCTTCTACTAGGTGTGCATTTTAGAGCCCCGCAGCACCTTCGGTCCTTCAACCGAAGCTTATTGAA CGAAGGATTGGGCGTTCTTGCAGAAGAAGATACAATCGACGACGAGAGATACCCGCAAGGTGTAGTCCTCGTCCCTCGCGGACAAGACGATGGCAGTGTT GTTGTCGGTCCTCACGTCAGAGGCAGTCGGCTTAGAGCTTCATCTGCAGGTGACGAAGAAGTTGATCTCCTTTTACCTGGTACTGCTAGGCTCCAAATCC AGCTAGGGGTAAACATGCCAGCTCGAGCGGAGCAGATGGCCGAGGAGGAAGCGGGGAAACAGAGGTTTCACGGAGTATACGACGTAGTCCTCTACCTCGG CATAATCGACATTCTCCAAGAGTACAACATGACGAAGAAAATTGAGCACGCTTACAAGTCTTTCCAGTTCGATTCGTTGTCAATCTCGGCCGTCGATCCA ACATTCTACTCGAAACGGTTCCTCGAGTTCATTCAGAAGGCATTCCCTCCTAATGCTGTCATCCACTGA
AA sequence Show only first row Show all	>Lus10014408 pacid=23143749 polypeptide=Lus10014408 locus=Lus10014408.g ID=Lus10014408.BGIv1.0 annot-version=v1.0 MSVPLANVEGVGRGLTLSDRTKSVDAISSRELSSISVNGDVSHRISESAAFKIGELFLPNGESYCGSLLGSVPEGTGKYVWSDGCIYEGEWRRGARNGTG KIQWPSGAAYEGEFSGGYMHGAGNYIGANNVSYRGRWRLNLKHGLGYQVYPNRDVFEGSWLQGTPEGPGKYSWANGNVYVGNMKGGKMTGKGTLTWMNGD SFEGSWLNGMMHGLGVYTWTDGGCYVGTWSHGLKDGKGTFYPCGSRFPSVQERYLNALRKRGLLPDMRKQNQAHIHHASSGDMGSVKVGREQRSHRDSSG NLSKGSLISLEQSRNKNVSLERRWSLEVAIEKVIGHDSSLESSEYDGANVPPILEREYMQGVLISEIVLNDNFSSLSRSAKRRQKKFVREIKRPGETILK GHRSYDLMVSLQLGIRYTVGKITPVQRREVRASDFGPRASFWMQFPKEGSQLTPPHRSDDFKWKDYCPMVFRNLREMFKIDAADYMISICGNDALRELSS PGKSGSIFFLSQDDRFMIKTLRKSEVKVLLEMLPDYHHHVKRYENTLITKFFGLHRIKPSSGQKFRFVVMGNMFCTELRIHRRFDLKGSSLGRSTEKIEI DENTTLKDLDLDYSFYLEPSWRESLLKQIEIDSKFLEAQRIMDYSLLLGVHFRAPQHLRSFNRSLLNEGLGVLAEEDTIDDERYPQGVVLVPRGQDDGSV VVGPHVRGSRLRASSAGDEEVDLLLPGTARLQIQLGVNMPARAEQMAEEEAGKQRFHGVYDVVLYLGIIDILQEYNMTKKIEHAYKSFQFDSLSISAVDP TFYSKRFLEFIQKAFPPNAVIH

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G09920		PIP5K9	phosphatidyl inositol monophos...		Lus10014408 [exp]	0	1
AT3G09920		PIP5K9	phosphatidyl inositol monophos...		Lus10023909 [exp]	1.0	0.9015
AT2G36290			alpha/beta-Hydrolases superfam...		Lus10018549 [exp]	5.5	0.7786
AT5G64530	NAC	ANAC104, XND1	Arabidopsis NAC domain contain...		Lus10035647 [exp]	6.0	0.8068
AT1G05160		ATKAO1, CYP88A3	ENT-KAURENOIC ACID OXYDASE 1, ...		Lus10033105 [exp]	8.1	0.7887
AT5G64530	NAC	ANAC104, XND1	Arabidopsis NAC domain contain...		Lus10035648 [exp]	8.5	0.8037
AT5G19070			SNARE associated Golgi protein...		Lus10034028 [exp]	10.2	0.7816
AT5G20540		ATBRXL4, BRX-LI...	BREVIS RADIX-like 4 (.1)		Lus10021565 [exp]	11.7	0.7809
AT2G01980		ATSOS1, SOS1, A...	ARABIDOPSIS SALT OVERLY SENSIT...		Lus10013798 [exp]	15.0	0.7164
AT3G24180			Beta-glucosidase, GBA2 type fa...		Lus10000757 [exp]	15.6	0.7782
AT5G05760		ATSYP31, ATSED5...	T-SNARE SED 5, syntaxin of pla...		Lus10028277 [exp]	18.7	0.7674

Compare expression of checked genes

Lus10014408 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.