Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G03530 351 / 8e-125 ATRABALPHA, AtRABC2a, AtRab18B ,ATRAB ALPHA ARABIDOPSIS THALIANA RAB GTPASE HOMOLOG C2A, RAB GTPase homolog C2A (.1) AT1G43890 308 / 7e-108 ATRAB-C1, RAB18-1, ATRAB18, AtRABC1 RAB GTPASE HOMOLOG 18-1, ARABIDOPSIS RAB GTPASE HOMOLOG B18, ARABIDOPSIS RAB GTPASE HOMOLOG C1, RAB GTPASE HOMOLOG B18 (.1.2.3) AT3G09910 291 / 5e-101 AtRab18C, AtRABC2b RAB GTPase homolog C2B (.1.2.3) AT1G02130 167 / 3e-52 ARA5, AtRABD2a, AtRab1B, Ara-5 ARABIDOPSIS THALIANA RAB D2A, ARABIDOPSIS THALIANA RESPONSIVE TO ABSCISIC ACID 1B, ARABIDOPSIS RAS 5, RAS 5 (.1) AT4G35860 167 / 5e-52 ATGB2, AtRABB1b, Atrab2C GTP-binding 2 (.1.2) AT3G09900 166 / 1e-51 AtRABE1e, AtRab8E RAB GTPase homolog E1E (.1) AT3G53610 165 / 3e-51 ATRAB8, AtRab8B, AtRABE1a RAB GTPase homolog 8 (.1.2.3) AT5G59840 164 / 8e-51 Ras-related small GTP-binding family protein (.1) AT3G11730 163 / 1e-50 ATFP8, AtRABD1 ARABIDOPSIS THALIANA RAB GTPASE HOMOLOG D1, Ras-related small GTP-binding family protein (.1) AT3G46060 162 / 6e-50 ARA3, Ara-3, AtRABE1c, AtRab8A RAB GTPase homolog 8A (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023910 [exp] 396 / 2e-142 AT5G03530 353 / 2e-125 ARABIDOPSIS THALIANA RAB GTPASE HOMOLOG C2A, RAB GTPase homolog C2A (.1) Lus10022608 [exp] 375 / 6e-134 AT5G03530 347 / 4e-123 ARABIDOPSIS THALIANA RAB GTPASE HOMOLOG C2A, RAB GTPase homolog C2A (.1) Lus10021507 [exp] 369 / 7e-132 AT5G03530 352 / 5e-125 ARABIDOPSIS THALIANA RAB GTPASE HOMOLOG C2A, RAB GTPase homolog C2A (.1) Lus10029745 [exp] 300 / 2e-99 AT1G43900 422 / 2e-144 Protein phosphatase 2C family protein (.1) Lus10042775 [exp] 281 / 8e-93 AT1G43900 434 / 4e-150 Protein phosphatase 2C family protein (.1) Lus10040423 [exp] 258 / 1e-87 AT5G03530 278 / 1e-95 ARABIDOPSIS THALIANA RAB GTPASE HOMOLOG C2A, RAB GTPase homolog C2A (.1) Lus10038671 [exp] 226 / 6e-75 AT5G03530 241 / 8e-81 ARABIDOPSIS THALIANA RAB GTPASE HOMOLOG C2A, RAB GTPase homolog C2A (.1) Lus10037940 [exp] 223 / 1e-73 AT5G03530 244 / 9e-82 ARABIDOPSIS THALIANA RAB GTPASE HOMOLOG C2A, RAB GTPase homolog C2A (.1) Lus10005443 [exp] 162 / 3e-50 AT3G46060 394 / 2e-141 RAB GTPase homolog 8A (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G097800 [exp] 359 / 6e-128 AT5G03530 349 / 5e-124 ARABIDOPSIS THALIANA RAB GTPASE HOMOLOG C2A, RAB GTPase homolog C2A (.1) Potri.006G121400 [exp] 346 / 1e-122 AT5G03530 335 / 2e-118 ARABIDOPSIS THALIANA RAB GTPASE HOMOLOG C2A, RAB GTPase homolog C2A (.1) Potri.002G074400 [exp] 300 / 1e-104 AT1G43890 363 / 2e-129 RAB GTPASE HOMOLOG 18-1, ARABIDOPSIS RAB GTPASE HOMOLOG B18, ARABIDOPSIS RAB GTPASE HOMOLOG C1, RAB GTPASE HOMOLOG B18 (.1.2.3) Potri.005G063500 [exp] 297 / 2e-103 AT1G43890 346 / 9e-123 RAB GTPASE HOMOLOG 18-1, ARABIDOPSIS RAB GTPASE HOMOLOG B18, ARABIDOPSIS RAB GTPASE HOMOLOG C1, RAB GTPASE HOMOLOG B18 (.1.2.3) Potri.007G105500 [exp] 294 / 3e-102 AT1G43890 343 / 1e-121 RAB GTPASE HOMOLOG 18-1, ARABIDOPSIS RAB GTPASE HOMOLOG B18, ARABIDOPSIS RAB GTPASE HOMOLOG C1, RAB GTPASE HOMOLOG B18 (.1.2.3) Potri.010G229600 [exp] 294 / 5e-102 AT5G03530 311 / 7e-109 ARABIDOPSIS THALIANA RAB GTPASE HOMOLOG C2A, RAB GTPase homolog C2A (.1) Potri.008G032000 [exp] 277 / 2e-95 AT5G03530 290 / 1e-100 ARABIDOPSIS THALIANA RAB GTPASE HOMOLOG C2A, RAB GTPase homolog C2A (.1) Potri.008G051700 [exp] 167 / 4e-52 AT3G46060 329 / 7e-116 RAB GTPase homolog 8A (.1.2.3) Potri.010G208900 [exp] 166 / 8e-52 AT3G46060 349 / 5e-124 RAB GTPase homolog 8A (.1.2.3) Potri.009G027900 [exp] 166 / 9e-52 AT3G46060 341 / 8e-121 RAB GTPase homolog 8A (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [flax] [poplar] P-loop_NTPase PF00071 [flax] [poplar] Ras Ras family
Representative CDS sequence Show only first row Show all	>Lus10014409 pacid=23143703 polypeptide=Lus10014409 locus=Lus10014409.g ID=Lus10014409.BGIv1.0 annot-version=v1.0 ATGGGATCTTCAGCAGGTAGTAGTGGGTATGATCTGTCATTCAAGTTGTTGTTGATTGGAGATTCAAGTGTTGGCAAAAGCAGCCTGCTTGTTAGCTTCA TCTCCACCACCTCTGCTGGAGAAGATCTTGCTCCCACCATTGGTGTGGACTTCAAGATCAAGCAGCTGACAGTAGCTGGCAAGAGACTGAAGCTCACCAT TTGGGATACTGCTGGGCAGGAGAGGTTCAGGACACTAACAAGCTCTTACTACAGGAATGCACAGGGAATCATACTTGTTTATGACGTGACAAGGAGAGAG ACTTTTACGAACCTATCTGATGTATGGGCTAAAGAAGTTGAGCTCTACTGCACAAATCAGGACTGTGTCAAGATGCTTGTTGGCAACAAAGTTGACAAAG TAGACTCTGATAGAGCTGTAACCAGAGAAGAAGGAATTGAACTTGCAAAACAGCACGGATGTTTGTTCCTCGAGTGCAGTGCTAAAACTCGTGAAAATGT GGAGCAATGCTTCGAGGAGCTCGCGCTAAAGATAATGGATGTTCCGAGTCTCTTGGAAGAAGGATCTACAGTCGGGAAGAGGAACATTCTAAAGCAAAAC CCAGATCGACAAATGTCTCAAAGCAACGGCTGTTGCTCTTAA
AA sequence Show only first row Show all	>Lus10014409 pacid=23143703 polypeptide=Lus10014409 locus=Lus10014409.g ID=Lus10014409.BGIv1.0 annot-version=v1.0 MGSSAGSSGYDLSFKLLLIGDSSVGKSSLLVSFISTTSAGEDLAPTIGVDFKIKQLTVAGKRLKLTIWDTAGQERFRTLTSSYYRNAQGIILVYDVTRRE TFTNLSDVWAKEVELYCTNQDCVKMLVGNKVDKVDSDRAVTREEGIELAKQHGCLFLECSAKTRENVEQCFEELALKIMDVPSLLEEGSTVGKRNILKQN PDRQMSQSNGCCS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G03530		ATRABALPHA, AtR...	ARABIDOPSIS THALIANA RAB GTPAS...		Lus10014409 [exp]	0	1
AT5G03040		IQD2	IQ-domain 2 (.1.2.3)		Lus10019916 [exp]	2.0	0.8370
AT1G10210		ATMPK1	mitogen-activated protein kina...		Lus10033197 [exp]	3.3	0.8602
AT1G33360			ATP-dependent Clp protease (.1...		Lus10000933 [exp]	4.9	0.8307
AT1G53400			Ubiquitin domain-containing pr...		Lus10005423 [exp]	9.5	0.7807
AT4G14350			AGC (cAMP-dependent, cGMP-depe...		Lus10021176 [exp]	11.8	0.7830
AT5G47540			Mo25 family protein (.1)		Lus10017565 [exp]	13.1	0.8270
AT5G01010			unknown protein		Lus10029706 [exp]	17.5	0.7889
AT3G26380			Melibiase family protein (.1)		Lus10006226 [exp]	18.2	0.7714
AT4G30240			Syntaxin/t-SNARE family protei...		Lus10017038 [exp]	20.3	0.7514
AT1G67900			Phototropic-responsive NPH3 fa...		Lus10026702 [exp]	21.9	0.7110

Compare expression of checked genes

Lus10014409 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.