Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G09890 210 / 3e-69 Ankyrin repeat family protein (.1.2) AT2G28840 76 / 6e-16 XBAT31 XB3 ortholog 1 in Arabidopsis thaliana (.1.2) AT4G19150 71 / 7e-15 Ankyrin repeat family protein (.1.2) AT2G25600 71 / 3e-14 AKT6, SPIK Shaker pollen inward K+ channel, Shaker pollen inward K+ channel (.1) AT5G40160 66 / 1e-12 EMB139, EMB506 embryo defective 506, EMBRYO DEFECTIVE 139, Ankyrin repeat family protein (.1) AT2G03430 62 / 1e-11 Ankyrin repeat family protein (.1) AT2G26650 62 / 2e-11 AKT1, ATAKT1 K+ transporter 1, K+ transporter 1, K+ transporter 1 (.1) AT4G35450 61 / 3e-11 AKR2A, AFT, AKR2 ankyrin repeat-containing protein 2 (.1.2.3.4.5) AT4G32500 60 / 2e-10 AKT5 K+ transporter 5, K+ transporter 5, K+ transporter 5 (.1) AT2G17390 59 / 3e-10 AKR2B ankyrin repeat-containing 2B (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023911 [exp] 374 / 4e-134 AT3G09890 219 / 6e-73 Ankyrin repeat family protein (.1.2) Lus10021508 [exp] 282 / 1e-97 AT3G09890 209 / 5e-69 Ankyrin repeat family protein (.1.2) Lus10022609 [exp] 221 / 3e-74 AT3G09890 181 / 1e-58 Ankyrin repeat family protein (.1.2) Lus10014522 [exp] 72 / 6e-15 AT5G40160 322 / 3e-109 embryo defective 506, EMBRYO DEFECTIVE 139, Ankyrin repeat family protein (.1) Lus10040829 [exp] 67 / 4e-13 AT2G28840 546 / 0.0 XB3 ortholog 1 in Arabidopsis thaliana (.1.2) Lus10032165 [exp] 67 / 5e-13 AT5G40160 293 / 3e-98 embryo defective 506, EMBRYO DEFECTIVE 139, Ankyrin repeat family protein (.1) Lus10017765 [exp] 64 / 5e-12 AT2G26650 395 / 1e-130 K+ transporter 1, K+ transporter 1, K+ transporter 1 (.1) Lus10033052 [exp] 64 / 5e-12 AT2G26650 1211 / 0.0 K+ transporter 1, K+ transporter 1, K+ transporter 1 (.1) Lus10005246 [exp] 61 / 8e-11 AT3G28880 275 / 4e-79 Ankyrin repeat family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G121500 [exp] 248 / 1e-84 AT3G09890 196 / 1e-63 Ankyrin repeat family protein (.1.2) Potri.016G097900 [exp] 243 / 1e-82 AT3G09890 214 / 5e-71 Ankyrin repeat family protein (.1.2) Potri.010G161300 [exp] 66 / 3e-13 AT2G03430 356 / 1e-125 Ankyrin repeat family protein (.1) Potri.001G238800 [exp] 67 / 5e-13 AT2G28840 657 / 0.0 XB3 ortholog 1 in Arabidopsis thaliana (.1.2) Potri.001G295200 [exp] 65 / 2e-12 AT5G40160 317 / 4e-108 embryo defective 506, EMBRYO DEFECTIVE 139, Ankyrin repeat family protein (.1) Potri.001G130500 [exp] 61 / 5e-11 AT4G19150 222 / 1e-72 Ankyrin repeat family protein (.1.2) Potri.003G103400 [exp] 57 / 5e-10 AT4G19150 234 / 2e-77 Ankyrin repeat family protein (.1.2) Potri.004G210100 [exp] 57 / 1e-09 AT2G17390 430 / 3e-151 ankyrin repeat-containing 2B (.1) Potri.004G210000 [exp] 57 / 1e-09 AT2G17390 418 / 1e-146 ankyrin repeat-containing 2B (.1) Potri.018G098400 [exp] 57 / 2e-09 AT5G57740 611 / 0.0 XB3 ortholog 2 in Arabidopsis thaliana (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0465 [flax] [poplar] Ank PF00023 [flax] [poplar] Ank Ankyrin repeat
Representative CDS sequence Show only first row Show all	>Lus10014410 pacid=23143719 polypeptide=Lus10014410 locus=Lus10014410.g ID=Lus10014410.BGIv1.0 annot-version=v1.0 ATGGCAGTTCACAGGGATGACCTAATGGACGAGGAAGAAAACGAGGAGGACAACGTCCTGTTTCAGGACGCGAACGCCGTCGATTTGGATCAGAACTTGC CCGAGCCGCTTCAGTCCATCCTCTCGGCGGCTCAATCCGGAAACTCCGATGCACTCACTCAAGCCTTAGATAATTTTGATGGAAACATTAATGAACCGTT GGAGGATGGTGACACGGCTCTCCACCTAGTTTGTCTGTATGGACATTTCAGCTGTGCTAAGGTACTCTTGGAAAGGGGAGCAAATGTGGAGGTTAAAGAT GAAGATGGTGCGATTCCACTACATGATGCTTGTGCAGGAGGATATACTGATATAGTGCAGCTTTTGCTCAGCCATGCTCAAAGTCCTGATTCTGTGAAGA GAATGCTTGAAACAGTCGACGATGAGGGTGATACTCCACTCCATCACGCTGCGAGAGGTGAACATAAGGAGATCGTAAACCTGTTGATGGCTTCTGGTGC TTCAGTGACTCACACAAACTCGTACGGAAAGACTCCAAGCGAGCTGGCCGAACCAGGAACAGAAGTGAGGACAATCTTGGAAGCCACTGCTTCATCCAGC TGA
AA sequence Show only first row Show all	>Lus10014410 pacid=23143719 polypeptide=Lus10014410 locus=Lus10014410.g ID=Lus10014410.BGIv1.0 annot-version=v1.0 MAVHRDDLMDEEENEEDNVLFQDANAVDLDQNLPEPLQSILSAAQSGNSDALTQALDNFDGNINEPLEDGDTALHLVCLYGHFSCAKVLLERGANVEVKD EDGAIPLHDACAGGYTDIVQLLLSHAQSPDSVKRMLETVDDEGDTPLHHAARGEHKEIVNLLMASGASVTHTNSYGKTPSELAEPGTEVRTILEATASSS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G09890			Ankyrin repeat family protein ...		Lus10014410 [exp]	0	1
AT1G54730			Major facilitator superfamily ...		Lus10035354 [exp]	1.4	0.9051
AT3G46020			RNA-binding (RRM/RBD/RNP motif...		Lus10040854 [exp]	2.0	0.9043
AT1G14300			ARM repeat superfamily protein...		Lus10037185 [exp]	2.2	0.8644
AT5G53070			Ribosomal protein L9/RNase H1 ...		Lus10005909 [exp]	6.3	0.8738
AT5G51960			unknown protein		Lus10036504 [exp]	6.6	0.8476
AT2G43080		AT-P4H-1	P4H isoform 1 (.1)		Lus10031048 [exp]	8.5	0.8536
AT2G43780			unknown protein		Lus10037305 [exp]	10.8	0.8294
AT1G54730			Major facilitator superfamily ...		Lus10029966 [exp]	13.9	0.8909
AT1G29990		PFD6, PDF6	prefoldin 6 (.1)		Lus10023313 [exp]	16.1	0.8376
AT4G33380			unknown protein		Lus10006482 [exp]	18.4	0.8032

Compare expression of checked genes

Lus10014410 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.