Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G08080 272 / 2e-91 ATACA7, ACA7 A. THALIANA ALPHA CARBONIC ANHYDRASE 7, alpha carbonic anhydrase 7 (.1) AT4G20990 258 / 7e-86 ATACA4, ACA4 A. THALIANA ALPHA CARBONIC ANHYDRASE 4, alpha carbonic anhydrase 4 (.1) AT1G08065 230 / 7e-75 ATACA5, ACA5 alpha carbonic anhydrase 5 (.1) AT2G28210 223 / 6e-73 ATACA2 alpha carbonic anhydrase 2 (.1) AT4G21000 219 / 1e-70 ATACA6, ACA6 A. THALIANA ALPHA CARBONIC ANHYDRASE 6, alpha carbonic anhydrase 6 (.1) AT5G04180 197 / 4e-62 ATACA3, ACA3 alpha carbonic anhydrase 3 (.1) AT5G56330 174 / 5e-52 ATACA8, ACA8 A. THALIANA ALPHA CARBONIC ANHYDRASE 8, alpha carbonic anhydrase 8 (.1) AT3G52720 161 / 7e-48 CAH1, ATACA1, ACA1 A. THALIANA ALPHA CARBONIC ANHYDRASE 1, alpha carbonic anhydrase 1 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023915 [exp] 521 / 0 AT1G08080 275 / 2e-92 A. THALIANA ALPHA CARBONIC ANHYDRASE 7, alpha carbonic anhydrase 7 (.1) Lus10042030 [exp] 282 / 3e-94 AT4G20990 313 / 9e-107 A. THALIANA ALPHA CARBONIC ANHYDRASE 4, alpha carbonic anhydrase 4 (.1) Lus10016104 [exp] 274 / 5e-92 AT1G08080 344 / 7e-120 A. THALIANA ALPHA CARBONIC ANHYDRASE 7, alpha carbonic anhydrase 7 (.1) Lus10021455 [exp] 274 / 7e-92 AT1G08080 343 / 1e-119 A. THALIANA ALPHA CARBONIC ANHYDRASE 7, alpha carbonic anhydrase 7 (.1) Lus10016105 [exp] 268 / 8e-90 AT1G08080 333 / 1e-115 A. THALIANA ALPHA CARBONIC ANHYDRASE 7, alpha carbonic anhydrase 7 (.1) Lus10018034 [exp] 251 / 3e-82 AT4G20990 248 / 1e-81 A. THALIANA ALPHA CARBONIC ANHYDRASE 4, alpha carbonic anhydrase 4 (.1) Lus10021454 [exp] 236 / 3e-77 AT1G08080 300 / 1e-102 A. THALIANA ALPHA CARBONIC ANHYDRASE 7, alpha carbonic anhydrase 7 (.1) Lus10018017 [exp] 236 / 4e-76 AT4G20990 240 / 4e-78 A. THALIANA ALPHA CARBONIC ANHYDRASE 4, alpha carbonic anhydrase 4 (.1) Lus10021456 [exp] 220 / 1e-71 AT1G08080 288 / 4e-99 A. THALIANA ALPHA CARBONIC ANHYDRASE 7, alpha carbonic anhydrase 7 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G121900 [exp] 339 / 1e-117 AT1G08080 289 / 4e-98 A. THALIANA ALPHA CARBONIC ANHYDRASE 7, alpha carbonic anhydrase 7 (.1) Potri.009G010200 [exp] 280 / 1e-94 AT1G08080 342 / 3e-119 A. THALIANA ALPHA CARBONIC ANHYDRASE 7, alpha carbonic anhydrase 7 (.1) Potri.004G212800 [exp] 276 / 5e-93 AT1G08080 347 / 3e-121 A. THALIANA ALPHA CARBONIC ANHYDRASE 7, alpha carbonic anhydrase 7 (.1) Potri.016G043700 [exp] 271 / 9e-91 AT4G20990 306 / 4e-105 A. THALIANA ALPHA CARBONIC ANHYDRASE 4, alpha carbonic anhydrase 4 (.1) Potri.006G047400 [exp] 256 / 4e-85 AT4G20990 289 / 4e-98 A. THALIANA ALPHA CARBONIC ANHYDRASE 4, alpha carbonic anhydrase 4 (.1) Potri.006G047500 [exp] 247 / 2e-81 AT4G20990 276 / 5e-93 A. THALIANA ALPHA CARBONIC ANHYDRASE 4, alpha carbonic anhydrase 4 (.1) Potri.006G212900 [exp] 184 / 9e-57 AT3G52720 261 / 5e-87 A. THALIANA ALPHA CARBONIC ANHYDRASE 1, alpha carbonic anhydrase 1 (.1.2) Potri.016G079600 [exp] 179 / 7e-55 AT3G52720 271 / 8e-91 A. THALIANA ALPHA CARBONIC ANHYDRASE 1, alpha carbonic anhydrase 1 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00194 [flax] [poplar] Carb_anhydrase Eukaryotic-type carbonic anhydrase
Representative CDS sequence Show only first row Show all	>Lus10014412 pacid=23143674 polypeptide=Lus10014412 locus=Lus10014412.g ID=Lus10014412.BGIv1.0 annot-version=v1.0 ATGAAACCCTCTCAAGCTTCCACCTTTTCCTTCTTCTTCTTCCTCTTGGCCTCTCTTGTTCTTCTTCTTCTTCTGCTTTCCTCACTCGTTGCTGCACAAG AAGTTGAGGATGAGAGAGAGTTTGACTACATTAGAGGAAGCGGCAAAGGTCCTGACAAATGGGGGGAGCTTAAGGATGATTGGGGAGCTTGCAGAACAGG ACAACTTCAGTCCCCCATTGATATGTCGGATCAAAGAGTGAAGCTTCTCAATAGATCTCTTGATATCAACCGCCACTACAAGCCTGCAAACTCCACTGTC AAAAACCGCGGACATGACATCTCTCTTCAATGGAAAGGGTCTGATGCTGGGTCTATAAGGATCAATGGGACGGAGTATTTGCTTCAGCAATGTCACTGGC ATTCTCCTTCCGAGCACACCATCAATGGCAGGAGGTTTGATATGGAGCTACACATGGTGCATTTTAATCCAGAGACGAAGAAAATTGCTGTGACTGGAGT CCTGTACAAGGCTGGCAGTAAGCCTTGTGAGTTCCTGTCCAAATTTATTAAGGATATAAAGTCGATTGAACACGACGAGATGGATAAGAGCAACGAAAAG AAGAAAGAGCTGGAGAAAGACATGGGAGTTATTGATCCTAAAGATATCAGAATGGGAGGCAAGAAGTATTACAGATACATCGGTTCACTTACTGTTCCTC CTTGCACTGAAGGAGTCATTTGGACTATAAACCGAAAGATAAAGACTGTTTCCAGAGACCAGATCAAAGCTCTTAGGGATGCTGTACATGATTATGCAGA GCAAAATGCAAGGCCAGTTCAAGAACTCCATCAACGAGAAGTCCAACTTTACGAACCAGACCAAATTTCCAACTAG
AA sequence Show only first row Show all	>Lus10014412 pacid=23143674 polypeptide=Lus10014412 locus=Lus10014412.g ID=Lus10014412.BGIv1.0 annot-version=v1.0 MKPSQASTFSFFFFLLASLVLLLLLLSSLVAAQEVEDEREFDYIRGSGKGPDKWGELKDDWGACRTGQLQSPIDMSDQRVKLLNRSLDINRHYKPANSTV KNRGHDISLQWKGSDAGSIRINGTEYLLQQCHWHSPSEHTINGRRFDMELHMVHFNPETKKIAVTGVLYKAGSKPCEFLSKFIKDIKSIEHDEMDKSNEK KKELEKDMGVIDPKDIRMGGKKYYRYIGSLTVPPCTEGVIWTINRKIKTVSRDQIKALRDAVHDYAEQNARPVQELHQREVQLYEPDQISN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G08080		ATACA7, ACA7	A. THALIANA ALPHA CARBONIC ANH...		Lus10014412 [exp]	0	1
AT3G55700			UDP-Glycosyltransferase superf...		Lus10004674 [exp]	1.4	0.9621
AT3G11340		UGT76B1	UDP-dependent glycosyltransfer...		Lus10004673 [exp]	2.0	0.9486
AT1G51340			MATE efflux family protein (.1...		Lus10042365 [exp]	3.9	0.9377
AT4G23100		ATECS1, CAD2, G...	ROOT MERISTEMLESS 1, PHYTOALEX...		Lus10002001 [exp]	7.9	0.9266
AT3G47780		ABCA7, ATATH6	A. THALIANA ABC2 HOMOLOG 6, AT...		Lus10023612 [exp]	8.7	0.9196
AT3G26380			Melibiase family protein (.1)		Lus10011407 [exp]	9.8	0.9404
AT2G28930		APK1B	protein kinase 1B (.1.2.3)		Lus10016537 [exp]	10.4	0.9391
					Lus10011553 [exp]	10.5	0.9243
AT2G46600			Calcium-binding EF-hand family...		Lus10005985 [exp]	12.5	0.9338
AT2G46600			Calcium-binding EF-hand family...		Lus10030227 [exp]	14.4	0.9310

Compare expression of checked genes

Lus10014412 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.