Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G16580 350 / 2e-118 Protein phosphatase 2C family protein (.1) AT5G66720 335 / 4e-113 Protein phosphatase 2C family protein (.1.2) AT4G33500 165 / 3e-45 Protein phosphatase 2C family protein (.1) AT2G30170 133 / 3e-36 Protein phosphatase 2C family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023916 [exp] 655 / 0 AT4G16580 384 / 1e-130 Protein phosphatase 2C family protein (.1) Lus10010797 [exp] 329 / 5e-111 AT4G16580 469 / 9e-165 Protein phosphatase 2C family protein (.1) Lus10016309 [exp] 331 / 4e-110 AT4G16580 542 / 0.0 Protein phosphatase 2C family protein (.1) Lus10001655 [exp] 137 / 7e-39 AT5G66720 127 / 6e-35 Protein phosphatase 2C family protein (.1.2) Lus10031355 [exp] 121 / 1e-31 AT2G30170 352 / 3e-122 Protein phosphatase 2C family protein (.1.2) Lus10010968 [exp] 121 / 1e-31 AT2G30170 364 / 9e-127 Protein phosphatase 2C family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G028900 [exp] 393 / 8e-136 AT5G66720 405 / 1e-139 Protein phosphatase 2C family protein (.1.2) Potri.005G125700 [exp] 383 / 9e-132 AT4G16580 373 / 3e-126 Protein phosphatase 2C family protein (.1) Potri.014G042800 [exp] 353 / 1e-118 AT4G16580 522 / 0.0 Protein phosphatase 2C family protein (.1) Potri.001G381000 [exp] 162 / 3e-47 AT5G66720 197 / 4e-60 Protein phosphatase 2C family protein (.1.2) Potri.011G102200 [exp] 144 / 7e-41 AT4G16580 191 / 4e-58 Protein phosphatase 2C family protein (.1) Potri.009G021300 [exp] 143 / 5e-39 AT4G16580 184 / 8e-54 Protein phosphatase 2C family protein (.1) Potri.011G013000 [exp] 130 / 1e-35 AT4G16580 175 / 6e-52 Protein phosphatase 2C family protein (.1) Potri.001G089201 [exp] 113 / 5e-30 AT4G16580 156 / 8e-46 Protein phosphatase 2C family protein (.1) Potri.001G282500 [exp] 110 / 2e-27 AT2G30170 382 / 1e-133 Protein phosphatase 2C family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0238 [flax] [poplar] PP2C PF07228 [flax] [poplar] SpoIIE Stage II sporulation protein E (SpoIIE)
Representative CDS sequence Show only first row Show all	>Lus10014413 pacid=23143751 polypeptide=Lus10014413 locus=Lus10014413.g ID=Lus10014413.BGIv1.0 annot-version=v1.0 ATGGCTGCTCGTGGTTCCAAGACGGTTTTTGGAGGGGATGTGTATACGGATGCCACTTGTGGTGGGAATGGAGGAGGAGGGATGGAGCTATTCAAGCCTA GTGGAGTCTTCTTTGCCGATTCGGGGCGTATTAGTTGCTGCTTGAAAGCCAGTGTTAAGATGGTTAAGAGAGAGTTCCCTCCGGGTAGCAGGCTGGTCTG TGGCAACTTCTTGTTCAGGAGGAAAAACAATCTAGGTGCTGTTGGGCAGCCATTGTTGAAGCACTTGCACACTTGTGCTGCCTCGATTGGTCCTGTTCCG GATTTGTCGAACGAAGAACAGGCAGCTGTTTCTACCATGAAACTGAAGCTGGATTCGGGATCGAGTTACTTGCCTCATCCTGACAAGGAAGCGACAGGTG GAGAGGATGCTCACTTCATATGCGGAGATGAACAAGCTATTGGTGTGGCTGATGGTGTAGGTGGATGGGCAGATGTAGGGGTTAATGCCGGTTTGTTTGC TCAGGAACTTATGCGTAACTCGGTGTTGGCCATTCAGGATGAGTCTAAAAGGTCGGTTGATCCTGCCAAGGTCTTAGAGATAGCTCATTCCAACACCAAA TCGAAAGGCTCTTCCACTGCTTGCATCATAGCTCTCACGAATGAGGGATTGCTTGCTGTCAATCTCGGGGACAGTGGATTCATAGTGATCAGAGATGGAT CGACAGTGTTCCGATCGCCAGTTCAACAACACGGCTTCAACTTCCCTTGCCAATTGGCGAGCGGTGATGGCGGTGACCTTCCAAGTGCAGGCCAGGTATT CAAAGTTCCAGTCTCACCTGGAGACGTGGTGATCGCTGGAACAGACGGGCTGTTCGACAACGTATACAGCAACGAGATTACTTCCATCGTCGTGAATTCC CTAAGGACAAACGTGGGGCCTCAAGAGACTGCGCAGAAGATCGTGGTTTTAGCGAGAGAACGTGCGATGGACCGAAACAGGCCGTCGCCATTCGCTGTTG CAGCTCAAGATGCTGGGTACCGCTACTATGGTGGGAAGCTTGATGACATCACTGTTGTTGTCTCCTACGTTACAAACTCCATTTGA
AA sequence Show only first row Show all	>Lus10014413 pacid=23143751 polypeptide=Lus10014413 locus=Lus10014413.g ID=Lus10014413.BGIv1.0 annot-version=v1.0 MAARGSKTVFGGDVYTDATCGGNGGGGMELFKPSGVFFADSGRISCCLKASVKMVKREFPPGSRLVCGNFLFRRKNNLGAVGQPLLKHLHTCAASIGPVP DLSNEEQAAVSTMKLKLDSGSSYLPHPDKEATGGEDAHFICGDEQAIGVADGVGGWADVGVNAGLFAQELMRNSVLAIQDESKRSVDPAKVLEIAHSNTK SKGSSTACIIALTNEGLLAVNLGDSGFIVIRDGSTVFRSPVQQHGFNFPCQLASGDGGDLPSAGQVFKVPVSPGDVVIAGTDGLFDNVYSNEITSIVVNS LRTNVGPQETAQKIVVLARERAMDRNRPSPFAVAAQDAGYRYYGGKLDDITVVVSYVTNSI

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G16580			Protein phosphatase 2C family ...		Lus10014413 [exp]	0	1
AT5G52960			unknown protein		Lus10027566 [exp]	8.9	0.8852
AT1G45230			Protein of unknown function (D...		Lus10009756 [exp]	9.5	0.8904
AT1G74070			Cyclophilin-like peptidyl-prol...		Lus10008990 [exp]	11.8	0.8889
AT3G14770		SWEET2, AtSWEET...	Nodulin MtN3 family protein (....		Lus10015245 [exp]	15.1	0.8471
AT2G27680			NAD(P)-linked oxidoreductase s...		Lus10020578 [exp]	19.1	0.8848
AT4G20360		AtRab8D, AtRABE...	RAB GTPase homolog E1B (.1)		Lus10019493 [exp]	21.5	0.8829
AT3G46780		PTAC16	plastid transcriptionally acti...		Lus10016502 [exp]	22.5	0.8855
AT3G09580			FAD/NAD(P)-binding oxidoreduct...		Lus10027764 [exp]	30.1	0.8742
AT4G13220			unknown protein		Lus10011887 [exp]	31.4	0.8672
AT1G19150		LHCA2*1, LHCA2*...	photosystem I light harvesting...		Lus10039912 [exp]	31.4	0.8807

Compare expression of checked genes

Lus10014413 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.