Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G53190 683 / 0 Pectin lyase-like superfamily protein (.1) AT3G54920 542 / 0 PMR6 powdery mildew resistant 6, Pectin lyase-like superfamily protein (.1) AT5G04310 533 / 0 Pectin lyase-like superfamily protein (.1) AT4G13710 514 / 0 Pectin lyase-like superfamily protein (.1.2) AT5G63180 501 / 3e-176 Pectin lyase-like superfamily protein (.1) AT1G67750 498 / 1e-175 Pectate lyase family protein (.1) AT1G04680 496 / 1e-174 Pectin lyase-like superfamily protein (.1) AT4G24780 495 / 3e-174 Pectin lyase-like superfamily protein (.1.2) AT5G48900 493 / 2e-173 Pectin lyase-like superfamily protein (.1) AT4G13210 493 / 7e-173 Pectin lyase-like superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023917 [exp] 845 / 0 AT3G53190 696 / 0.0 Pectin lyase-like superfamily protein (.1) Lus10037945 [exp] 550 / 0 AT3G54920 599 / 0.0 powdery mildew resistant 6, Pectin lyase-like superfamily protein (.1) Lus10023542 [exp] 526 / 0 AT5G04310 579 / 0.0 Pectin lyase-like superfamily protein (.1) Lus10038157 [exp] 514 / 0 AT4G13710 685 / 0.0 Pectin lyase-like superfamily protein (.1.2) Lus10022817 [exp] 513 / 0 AT3G24670 673 / 0.0 Pectin lyase-like superfamily protein (.1) Lus10011885 [exp] 511 / 3e-180 AT3G07010 674 / 0.0 Pectin lyase-like superfamily protein (.1) Lus10023679 [exp] 507 / 3e-178 AT4G13710 729 / 0.0 Pectin lyase-like superfamily protein (.1.2) Lus10011758 [exp] 503 / 5e-177 AT4G13710 703 / 0.0 Pectin lyase-like superfamily protein (.1.2) Lus10006456 [exp] 485 / 2e-170 AT1G67750 625 / 0.0 Pectate lyase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G122000 [exp] 737 / 0 AT3G53190 647 / 0.0 Pectin lyase-like superfamily protein (.1) Potri.010G229000 [exp] 587 / 0 AT5G04310 583 / 0.0 Pectin lyase-like superfamily protein (.1) Potri.008G032700 [exp] 562 / 0 AT5G04310 556 / 0.0 Pectin lyase-like superfamily protein (.1) Potri.003G175900 [exp] 512 / 3e-180 AT4G13710 681 / 0.0 Pectin lyase-like superfamily protein (.1.2) Potri.001G052300 [exp] 509 / 3e-179 AT4G13710 696 / 0.0 Pectin lyase-like superfamily protein (.1.2) Potri.012G091500 [exp] 504 / 9e-178 AT4G24780 645 / 0.0 Pectin lyase-like superfamily protein (.1.2) Potri.001G339500 [exp] 503 / 2e-177 AT4G24780 617 / 0.0 Pectin lyase-like superfamily protein (.1.2) Potri.015G087800 [exp] 501 / 3e-176 AT5G63180 657 / 0.0 Pectin lyase-like superfamily protein (.1) Potri.008G182200 [exp] 498 / 2e-175 AT1G67750 671 / 0.0 Pectate lyase family protein (.1) Potri.014G178100 [exp] 494 / 2e-173 AT3G07010 652 / 0.0 Pectin lyase-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0268 [flax] [poplar] Pec_lyase-like PF00544 [flax] [poplar] Pectate_lyase_4 Pectate lyase
Representative CDS sequence Show only first row Show all	>Lus10014414 pacid=23143672 polypeptide=Lus10014414 locus=Lus10014414.g ID=Lus10014414.BGIv1.0 annot-version=v1.0 ATGGGCAATGCAGCTACAGAACTCGGATGGGCAATGCAGCTCAACCTCACTTTCCCATCTCCTCACCCTGACCCAGAGTTCGTAGCTCAAGAAGTCCAAA GGAGAGTGAATGCTTCAATCTCAAGAAGGGAGACCCTCCAGATATCCCAGAAAGACCAATCCTCCGCTTGCTTCACTGGGAACCCGATTGATGACTGCTG GAAATGCGACCCGGACTGGCCAAACAACCGCCAAAGGCTGGCTGATTGCGCCATTGGGTTCGGGCAGTACGCAATGGGAGGCAAGAACGGCGAGTATTAC ATAGTCACCGACTCCTCAGACGATGATGCTGTGAATCCCAAGCCTGGAACGCTAAGATACGCAGTGATACAGGAAGAACCACTGTGGATTGTGTTCCCTA GCAACATGCTCATCAAGCTGAAGCAGGAACTCATCTTCAATAGCTTCAAAACCCTGGACGGACGTGGCGCAAATGTCCATATAGAAGGCGGCGGCTGCAT TACCCTGCAGTACATTAGCAATGTCATCATCCATAACATCCACATTCACCATTGTGTTCCTTCAGGAAACACGAATGTGAGGTCAAGCCCAACACATTAC GGCTACAGGACGAAATCAGACGGAGACGGAATCTCAATCTTTGGAGCAAAGGACATATGGATTGACCATTGTACGTTGTCTCACTGTACTGACGGACTAA TCGACGCCGTGATGGGATCCACAGGGATTACGATCTCAAATAACTACTTCTCCCACCACAACGAGGTGATGCTGTTGGGCCACAGCGACGATTACTCGCC CGACACGGGGATGCAGGTCACCATCGCGTTCAATCACTTCGGCGAGCAGCTCGTCCAGCGGATGCCTCGCTGCCGGCGAGGGTACATCCACGTCGTCAAC AACGATTTTACGGAGTGGGAGATGTACGCCATCGGAGGAAGCGGGCATCCGACGATCAACAGCCAGGGGAATCGCTACGTCGCGCCTTCGAACCCTAATG CAAAAGAGGTGACGAAGAGGCTGGACTCCGGCGACGGGGAATGGAAAGGGTGGAATTGGAGGTCGGAAGGGGATGTAATGGTGAACGGAGCTTTCTTTGT GTCGTCGGGGGAGGAGTTGGAGGTGAAGTATGAGAAGGCTTACAGTGTGGAGCCCAAGTCCGTCGATCTTATCGGCATGCTTACTCTCCACGCCGGCGCT CTCGGAGTTGGTGGCAGGGAAAACAACTTGGGAATGTGGAGTACTGGGCCCAATGGCGGCACACCCGGGTTAGGCTCCAGCGACGACTACTCCGACGACT ATGCAGCCAGCGGCGGAGGTACTCCGCCTCCGTCGCCGTCGCTTCTGACGTTTGCAGTAGCGATCTTGTGCTTCATTTCTTGCTACACTACTATCGCCTT CACCTCCATGCTATAG
AA sequence Show only first row Show all	>Lus10014414 pacid=23143672 polypeptide=Lus10014414 locus=Lus10014414.g ID=Lus10014414.BGIv1.0 annot-version=v1.0 MGNAATELGWAMQLNLTFPSPHPDPEFVAQEVQRRVNASISRRETLQISQKDQSSACFTGNPIDDCWKCDPDWPNNRQRLADCAIGFGQYAMGGKNGEYY IVTDSSDDDAVNPKPGTLRYAVIQEEPLWIVFPSNMLIKLKQELIFNSFKTLDGRGANVHIEGGGCITLQYISNVIIHNIHIHHCVPSGNTNVRSSPTHY GYRTKSDGDGISIFGAKDIWIDHCTLSHCTDGLIDAVMGSTGITISNNYFSHHNEVMLLGHSDDYSPDTGMQVTIAFNHFGEQLVQRMPRCRRGYIHVVN NDFTEWEMYAIGGSGHPTINSQGNRYVAPSNPNAKEVTKRLDSGDGEWKGWNWRSEGDVMVNGAFFVSSGEELEVKYEKAYSVEPKSVDLIGMLTLHAGA LGVGGRENNLGMWSTGPNGGTPGLGSSDDYSDDYAASGGGTPPPSPSLLTFAVAILCFISCYTTIAFTSML

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G53190			Pectin lyase-like superfamily ...		Lus10014414 [exp]	0	1
AT3G53190			Pectin lyase-like superfamily ...		Lus10023917 [exp]	1.0	0.9133
AT2G39870			unknown protein		Lus10004675 [exp]	22.3	0.7837
AT2G34710	HD	ATHB14, PHB-1D,...	PHABULOSA 1D, PHABULOSA, ARABI...		Lus10023357 [exp]	31.5	0.7473
AT3G18990	B3	REM39, VRN1	REDUCED VERNALIZATION RESPONSE...		Lus10038189 [exp]	36.8	0.7568
AT5G48500			unknown protein		Lus10020403 [exp]	39.1	0.7230
AT3G10490	NAC	ANAC051, ANAC05...	Arabidopsis NAC domain contain...		Lus10037939 [exp]	46.9	0.7479
AT1G48620		HON5	high mobility group A5 (.1)		Lus10032231 [exp]	55.3	0.7253
AT2G34710	HD	ATHB14, PHB-1D,...	PHABULOSA 1D, PHABULOSA, ARABI...		Lus10038449 [exp]	55.7	0.7212
AT2G33510		AtCFL1	unknown protein		Lus10002577 [exp]	67.5	0.7273
AT1G16520			unknown protein		Lus10031193 [exp]	71.7	0.7191

Compare expression of checked genes

Lus10014414 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.