Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G36835 168 / 3e-54 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023919 [exp] 221 / 6e-75 AT2G36835 193 / 3e-65 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G122200 [exp] 176 / 1e-57 AT2G36835 194 / 1e-65 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10014416 pacid=23143682 polypeptide=Lus10014416 locus=Lus10014416.g ID=Lus10014416.BGIv1.0 annot-version=v1.0 ATGTCGAAGAAAGGAGGCGCTGAGTTGCAGAACGACGCGCCATGGCGGGTCTCCACCTCCAAACCAGTCCCCAAAATCCATATCTCCCCGGTTCTCCGCG TCTCTCATGACCCTTACTCTGATTACGCAATCTCCGTCATGAAGCACCATGATCCGATTGGAAGTGGAATGGCGATTGATGCGATTGTCGAAGCTGCTGG ACCCGATTGCTTAGTTCCTGGCCAAATTACTCCCGTTCGATTGCTTGGGCTTAAGGTGTGGCCGATTGAAGTGGACTTGAAGTTTATGGAACCAGTTGGA AGGGAACTTAAGACACTTGGCAGGGTACTTGTTAATCCTAATTTTGGTTGCATTCTTTCCGTTAATCCAAATGTCATATTAGAACTGGAATCTACTCTGT TTATAACTAGAATATTTCCTGATTTATATCCTCTGGTTCAATCTAATTCTCCAGAAGGTAAAAGCTTTATCTCACATATTACATCCCCTGATAGCTATGG AAGTTACGAGTTTCATCTTACTAGTTGA
AA sequence Show only first row Show all	>Lus10014416 pacid=23143682 polypeptide=Lus10014416 locus=Lus10014416.g ID=Lus10014416.BGIv1.0 annot-version=v1.0 MSKKGGAELQNDAPWRVSTSKPVPKIHISPVLRVSHDPYSDYAISVMKHHDPIGSGMAIDAIVEAAGPDCLVPGQITPVRLLGLKVWPIEVDLKFMEPVG RELKTLGRVLVNPNFGCILSVNPNVILELESTLFITRIFPDLYPLVQSNSPEGKSFISHITSPDSYGSYEFHLTS

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G36835			unknown protein		Lus10014416 [exp]	0	1
AT4G09650		PDE332, ATPD	PIGMENT DEFECTIVE 332, ATP syn...		Lus10020508 [exp]	9.8	0.8833
AT4G26860			Predicted pyridoxal phosphate-...		Lus10032558 [exp]	10.7	0.8652
AT4G32260		PDE334	PIGMENT DEFECTIVE 334, ATPase,...		Lus10041039 [exp]	15.0	0.8746
AT3G05170			Phosphoglycerate mutase family...		Lus10024659 [exp]	15.3	0.8630
AT1G64450			Glycine-rich protein family (....		Lus10003189 [exp]	15.5	0.8573
AT4G32260		PDE334	PIGMENT DEFECTIVE 334, ATPase,...		Lus10006188 [exp]	17.6	0.8726
AT3G06483		ATPDHK, PDK	pyruvate dehydrogenase kinase ...		Lus10018337 [exp]	18.3	0.8659
					Lus10040811 [exp]	20.8	0.8699
AT1G64890			Major facilitator superfamily ...		Lus10024977 [exp]	22.4	0.8518
AT3G61920			unknown protein		Lus10030204 [exp]	22.4	0.8385

Compare expression of checked genes

Lus10014416 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.