Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G09880 659 / 0 ATB' BETA, ATB'BETA Protein phosphatase 2A regulatory B subunit family protein (.1) AT5G03470 642 / 0 ATB' ALPHA, ATB'ALPHA Protein phosphatase 2A regulatory B subunit family protein (.1) AT4G15415 539 / 0 ATB'GAMMA, ATB' GAMMA Protein phosphatase 2A regulatory B subunit family protein (.1.2) AT1G13460 533 / 0 Protein phosphatase 2A regulatory B subunit family protein (.1.2) AT3G21650 532 / 0 Protein phosphatase 2A regulatory B subunit family protein (.1) AT3G26020 529 / 0 Protein phosphatase 2A regulatory B subunit family protein (.1.2.3.4) AT3G54930 525 / 0 Protein phosphatase 2A regulatory B subunit family protein (.1) AT3G26030 466 / 4e-161 ATB' DELTA, ATB'DELTA serine/threonine protein phosphatase 2A 55 kDa regulatory subunit B prime delta (.1) AT5G25510 461 / 5e-159 Protein phosphatase 2A regulatory B subunit family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023920 [exp] 799 / 0 AT5G03470 773 / 0.0 Protein phosphatase 2A regulatory B subunit family protein (.1) Lus10022612 [exp] 708 / 0 AT3G09880 770 / 0.0 Protein phosphatase 2A regulatory B subunit family protein (.1) Lus10021511 [exp] 674 / 0 AT3G09880 739 / 0.0 Protein phosphatase 2A regulatory B subunit family protein (.1) Lus10030002 [exp] 539 / 0 AT4G15415 763 / 0.0 Protein phosphatase 2A regulatory B subunit family protein (.1.2) Lus10035321 [exp] 538 / 0 AT4G15415 764 / 0.0 Protein phosphatase 2A regulatory B subunit family protein (.1.2) Lus10015144 [exp] 536 / 0 AT4G15415 753 / 0.0 Protein phosphatase 2A regulatory B subunit family protein (.1.2) Lus10032082 [exp] 536 / 0 AT4G15415 726 / 0.0 Protein phosphatase 2A regulatory B subunit family protein (.1.2) Lus10031536 [exp] 530 / 0 AT3G26020 724 / 0.0 Protein phosphatase 2A regulatory B subunit family protein (.1.2.3.4) Lus10006440 [exp] 501 / 1e-174 AT3G26020 651 / 0.0 Protein phosphatase 2A regulatory B subunit family protein (.1.2.3.4)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G098400 [exp] 683 / 0 AT3G09880 743 / 0.0 Protein phosphatase 2A regulatory B subunit family protein (.1) Potri.006G122300 [exp] 665 / 0 AT3G09880 692 / 0.0 Protein phosphatase 2A regulatory B subunit family protein (.1) Potri.010G054300 [exp] 555 / 0 AT3G26020 746 / 0.0 Protein phosphatase 2A regulatory B subunit family protein (.1.2.3.4) Potri.014G157000 [exp] 554 / 0 AT3G21650 775 / 0.0 Protein phosphatase 2A regulatory B subunit family protein (.1) Potri.008G180000 [exp] 546 / 0 AT3G26020 711 / 0.0 Protein phosphatase 2A regulatory B subunit family protein (.1.2.3.4) Potri.002G226200 [exp] 541 / 0 AT4G15415 740 / 0.0 Protein phosphatase 2A regulatory B subunit family protein (.1.2) Potri.017G070100 [exp] 538 / 0 AT1G13460 728 / 0.0 Protein phosphatase 2A regulatory B subunit family protein (.1.2) Potri.008G179900 [exp] 525 / 0 AT3G26020 731 / 0.0 Protein phosphatase 2A regulatory B subunit family protein (.1.2.3.4) Potri.010G054400 [exp] 524 / 0 AT3G26020 730 / 0.0 Protein phosphatase 2A regulatory B subunit family protein (.1.2.3.4) Potri.018G034200 [exp] 458 / 1e-157 AT5G25510 809 / 0.0 Protein phosphatase 2A regulatory B subunit family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF01603 [flax] [poplar] B56 Protein phosphatase 2A regulatory B subunit (B56 family)
Representative CDS sequence Show only first row Show all	>Lus10014417 pacid=23143717 polypeptide=Lus10014417 locus=Lus10014417.g ID=Lus10014417.BGIv1.0 annot-version=v1.0 ATGTTCAAGAAAATCATTAAAGGCGGCAGAAAGCCGTCCAAGACCGAGGATTTAGGGAACGCCGGCGGACACCACCGCCAGGGGTCGGGCCAGGGAAATG TGGTGGTGAACCACGCCTCGAGGGGGACTCCTCATGGCGCTGCGCCTGCAGTTCCGGCGCCGGTAGCGACGCCGCCTCCGCCTATGCTAGCGGTTGAGCC TCTGCCCATGCTGCGGGACGTTGCTGTATCGGAGCGGCACAATCTGTTCCTCCGGAAGCTTCAGGTTTGTTGCTTTCAGTTTGATTTCAACGACACTTTG AAATCGGTGAGGGAGAAGGAAATCAAGAGGCAGACGTTGCTGGAACTCGTGGATTTTCTCCAGTCTGGGTCAGGGAAAATATCGGAGTTGTGTCAGGAAG AAATGATAAAGATGGTATCTGTGAATGTGTTTCGGAGTTTGCCTCCAAACTCGCATGAGAGTACGGGTCAGGAGCCTGCTGATCCTGAAGAAGAGGAGCC CTATTTGGAACCTTCATGGGGTCATTTGCAGCTTGTTTATGAGATTGTGTTGAGATACGTTGTGTCCTCGGATACCGACACCAAAGTTGCCAAGAGGTAC ATTGATCATTCTTTCGTGTTGAAGTTGCTTGATTTGTTTGATTCTGAAGATCCAAGGGAGCGGGAGTATTTGAAAACTATACTCCATAGGATTTATGGGA AATTCATGGTGCATCGTCCCTTTATTAGGAAGGCTATCAACAATATTTTTTATCGGTTCATATACGAGACAGAGAGGCACAGTGGGATAGGGGAGCTTTT AGAGATCTTGGGAAGTATTATAAACGGGTTTGCCTTGCCAATGAAGGAGGAGCATAAATTGTTTCTTGTTAGGGCGCTTATACCGCTACATAAACCGAAG GCGATTTCGATATACCATCAGCAGCTGTCTTATTGCATCACCCAGTTTGTTGAAAAGGACTACAAACTGGCTGATACGGTTATAAGGGGTTTGTTGAAGT ATTGGCCTGTTACGAATTGTGGGAAAGAAGTTCTCTTTTTGGGGGAACTTGAAGAAGTGCTGGAGGCAACTCAACCTGCAGAGTTTCAACGTTGCATGGT GCCCCTATTCAGACAGATTGGTCGTTGCTTAACTAGTTCACATTTTCAGATTGAGATTAGCTTTATTGGTGGCGCAGAACACTTTGACAGAAAACCATAT GTGCAGGTTGCAGAGCGAGCACTGTTCTTGTGGAATAACGAACACATAGTGGGCTTAATCGCCCAGAACCGGAGTGTAGTACTACCGATCCTCTTCGAAG CACTGGAGAAGAACATCCAGACTCACTGGAACCAAGCCGTCCACGGACTGACAGTCAACGTCCGGAAAATGTTCCTCGAAATGGACGGTGAGCTATTCGA AGAATGCCAGAGGCGTTACGAGGAGAAAGAGTCGAGGGCGAAAGAGGTGGAAGAGCAGCGGGAAATGACATGGAAGAGACTCACAGACGTTGCAGCGGAG AGGGGAGGAGAGGCAATGATCACTGCTTGA
AA sequence Show only first row Show all	>Lus10014417 pacid=23143717 polypeptide=Lus10014417 locus=Lus10014417.g ID=Lus10014417.BGIv1.0 annot-version=v1.0 MFKKIIKGGRKPSKTEDLGNAGGHHRQGSGQGNVVVNHASRGTPHGAAPAVPAPVATPPPPMLAVEPLPMLRDVAVSERHNLFLRKLQVCCFQFDFNDTL KSVREKEIKRQTLLELVDFLQSGSGKISELCQEEMIKMVSVNVFRSLPPNSHESTGQEPADPEEEEPYLEPSWGHLQLVYEIVLRYVVSSDTDTKVAKRY IDHSFVLKLLDLFDSEDPREREYLKTILHRIYGKFMVHRPFIRKAINNIFYRFIYETERHSGIGELLEILGSIINGFALPMKEEHKLFLVRALIPLHKPK AISIYHQQLSYCITQFVEKDYKLADTVIRGLLKYWPVTNCGKEVLFLGELEEVLEATQPAEFQRCMVPLFRQIGRCLTSSHFQIEISFIGGAEHFDRKPY VQVAERALFLWNNEHIVGLIAQNRSVVLPILFEALEKNIQTHWNQAVHGLTVNVRKMFLEMDGELFEECQRRYEEKESRAKEVEEQREMTWKRLTDVAAE RGGEAMITA

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G03470		ATB' ALPHA, ATB...	Protein phosphatase 2A regulat...		Lus10014417 [exp]	0	1
AT5G03470		ATB' ALPHA, ATB...	Protein phosphatase 2A regulat...		Lus10023920 [exp]	2.0	0.8400
AT2G30910		ARPC1B, ARPC1, ...	actin-related protein C1A (.1....		Lus10031375 [exp]	2.2	0.8483
AT1G74780			Nodulin-like / Major Facilitat...		Lus10033115 [exp]	3.9	0.8041
AT3G55830		EPC1	ECTOPICALLY PARTING CELLS, Nuc...		Lus10040216 [exp]	5.3	0.7981
AT5G19390			Rho GTPase activation protein ...		Lus10036047 [exp]	5.5	0.8277
AT3G07630		AtADT2, ADT2	Arabidopsis thaliana arogenate...		Lus10036135 [exp]	9.8	0.7459
AT3G61260			Remorin family protein (.1)		Lus10039215 [exp]	11.5	0.7764
AT3G26670			Protein of unknown function (D...		Lus10041504 [exp]	12.2	0.8031
AT5G46630			Clathrin adaptor complexes med...		Lus10040086 [exp]	14.5	0.7789
AT1G06470			Nucleotide/sugar transporter f...		Lus10010954 [exp]	17.8	0.8046

Compare expression of checked genes

Lus10014417 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.