Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G36840 495 / 4e-175 ACR10 ACT domain repeats 10, ACT-like superfamily protein (.1) AT2G39570 367 / 6e-125 ACR9 ACT domain repeats 9, ACT domain-containing protein (.1) AT1G69040 48 / 6e-06 ACR4 ACT domain repeat 4 (.1.2) AT2G03730 45 / 8e-05 ACR5 ACT domain repeat 5 (.1.2) AT3G01990 44 / 0.0001 ACR6 ACT domain repeat 6 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023921 [exp] 729 / 0 AT2G36840 550 / 0.0 ACT domain repeats 10, ACT-like superfamily protein (.1) Lus10017470 [exp] 478 / 4e-168 AT2G36840 507 / 1e-179 ACT domain repeats 10, ACT-like superfamily protein (.1) Lus10004948 [exp] 366 / 5e-124 AT2G39570 479 / 7e-169 ACT domain repeats 9, ACT domain-containing protein (.1) Lus10001702 [exp] 347 / 7e-117 AT2G39570 582 / 0.0 ACT domain repeats 9, ACT domain-containing protein (.1) Lus10005157 [exp] 344 / 1e-115 AT2G39570 587 / 0.0 ACT domain repeats 9, ACT domain-containing protein (.1) Lus10005447 [exp] 273 / 2e-88 AT2G36840 385 / 2e-132 ACT domain repeats 10, ACT-like superfamily protein (.1) Lus10028812 [exp] 270 / 3e-88 AT2G36840 288 / 1e-95 ACT domain repeats 10, ACT-like superfamily protein (.1) Lus10019191 [exp] 51 / 6e-07 AT1G69040 434 / 2e-152 ACT domain repeat 4 (.1.2) Lus10036827 [exp] 49 / 4e-06 AT1G69040 702 / 0.0 ACT domain repeat 4 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G442600 [exp] 572 / 0 AT2G36840 546 / 0.0 ACT domain repeats 10, ACT-like superfamily protein (.1) Potri.011G154600 [exp] 567 / 0 AT2G36840 550 / 0.0 ACT domain repeats 10, ACT-like superfamily protein (.1) Potri.010G228500 [exp] 481 / 7e-170 AT2G36840 525 / 0.0 ACT domain repeats 10, ACT-like superfamily protein (.1) Potri.008G033200 [exp] 471 / 1e-165 AT2G36840 513 / 0.0 ACT domain repeats 10, ACT-like superfamily protein (.1) Potri.001G237100 [exp] 380 / 7e-130 AT2G39570 533 / 0.0 ACT domain repeats 9, ACT domain-containing protein (.1) Potri.008G052900 [exp] 355 / 4e-120 AT2G39570 574 / 0.0 ACT domain repeats 9, ACT domain-containing protein (.1) Potri.010G207700 [exp] 345 / 5e-116 AT2G39570 560 / 0.0 ACT domain repeats 9, ACT domain-containing protein (.1) Potri.003G116600 [exp] 51 / 9e-07 AT1G12420 624 / 0.0 ACT domain repeat 8 (.1) Potri.001G115600 [exp] 47 / 2e-05 AT1G12420 627 / 0.0 ACT domain repeat 8 (.1) Potri.T124144 [exp] 44 / 0.0002 AT1G69040 721 / 0.0 ACT domain repeat 4 (.1.2)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10014418 pacid=23143716 polypeptide=Lus10014418 locus=Lus10014418.g ID=Lus10014418.BGIv1.0 annot-version=v1.0 ATGGGTATTCTCCACGACGACGTCGTACTGGTGACCCAACCGGAGAGACAAGACGACCCAACAATCATCACAGTCAACTGTCCCGACAAGACAGGTCTGG GCTGCGACCTCTGTCGTATCATCCTCTTCTTCGGCCTTAACATTGTCAGAGGAGATGTTTCCACGGACGGGAAGTGGTGCTACATAGTGTTTTGGGTGGT GGGCGCCGGGGAGATACGGTGGTCGTTGTTGAAGAAGAGGTTGATTGAAGCTTGCCCTTCTTGTTCTTCTGCTTCTGGGATTTCATTCTACAGCTCTGAG TTGCAGAAGAAGATTCCTGATGTGTTTCTTCTTAAGCTCTGCTGCTTTGACCGAACAGGGCTTCTCCATGATGTGACTGGGAAGCTATGTGAGCTTGAGC TGGCCATAAAGAAGGTGAAGGTGTCGACGACTCCTGATGGGAAAGTTATGGACCTTTTCTTCATTACTGATACCAGGGAGCTTCTGCACACGAGGGAAAG AAGGGAAGAAACATACGGTTATCTGAAAGCCGCGATAGGAGAAGCCATGATAAGCTGCGACATAGAAATGGTCGGTCCAGAAATCACAGCATGCTCTCAG GAGTCCTCTTTCCTTCCTCATTCCATGACAGATGATCTTCTTCAGCTGGATTTAGCAGCAGCTGAACTCCCCACTTCACTAACTTCCACAGGTGTTTCTG TGACCATGGATAACTCACTGAGTCTTGGTCACACCCTTGTCCAAATCATGTGCCAGGATCACAAAGGCCTTCTCTACGACATCATGCGAACCCTCAAAGA TTGCGGTATCCAGATTTCCTATGGGAGGTTCTCCACAAAGCAAGGGAGGAACTGTGAGATAGACCTTTTCATTGTGCAAACCAATGGTAACAAGATAGTA GATCCCAGCAAGCAAAAGGGTTTGGCCTCGCGTCTCGAATCAGAACTTCGTCGACCACTTCGTGTGGCACTCGTGAGCCGGGGTCCTGATACCGAGCTTA TAGTAGCTAACCCTGTTGAGCTATCTGGGAAAGGCAGACCTCTAGTGTTTTATGATATCACCCTTGCTCTCAAGTTACTTGACACTTGCATCTTTTTGGC TGAGATTCGGAGGAGAATGATAGGGGATCGCGAATTCGAAGTGTATAGAGTGTTGCTGGATGAAGGGGAAGGGTTGTCAGTTCCAAGAAGCGGGATTGAG GAAGGAGTTTGGAGGATGCTAATGGGCTGGGAGTGA
AA sequence Show only first row Show all	>Lus10014418 pacid=23143716 polypeptide=Lus10014418 locus=Lus10014418.g ID=Lus10014418.BGIv1.0 annot-version=v1.0 MGILHDDVVLVTQPERQDDPTIITVNCPDKTGLGCDLCRIILFFGLNIVRGDVSTDGKWCYIVFWVVGAGEIRWSLLKKRLIEACPSCSSASGISFYSSE LQKKIPDVFLLKLCCFDRTGLLHDVTGKLCELELAIKKVKVSTTPDGKVMDLFFITDTRELLHTRERREETYGYLKAAIGEAMISCDIEMVGPEITACSQ ESSFLPHSMTDDLLQLDLAAAELPTSLTSTGVSVTMDNSLSLGHTLVQIMCQDHKGLLYDIMRTLKDCGIQISYGRFSTKQGRNCEIDLFIVQTNGNKIV DPSKQKGLASRLESELRRPLRVALVSRGPDTELIVANPVELSGKGRPLVFYDITLALKLLDTCIFLAEIRRRMIGDREFEVYRVLLDEGEGLSVPRSGIE EGVWRMLMGWE

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G36840		ACR10	ACT domain repeats 10, ACT-lik...		Lus10014418 [exp]	0	1
AT2G36840		ACR10	ACT domain repeats 10, ACT-lik...		Lus10023921 [exp]	1.4	0.9504
AT3G07170			Sterile alpha motif (SAM) doma...		Lus10011841 [exp]	4.2	0.9327
AT5G01520		AtAIRP2, AIRP2	ABA Insensitive RING Protein 2...		Lus10002491 [exp]	4.5	0.9297
AT4G18880	HSF	AT-HSFA4A ,HSF ...	ARABIDOPSIS THALIANA HEAT SHOC...		Lus10007318 [exp]	5.1	0.9410
AT4G18880	HSF	AT-HSFA4A ,HSF ...	ARABIDOPSIS THALIANA HEAT SHOC...		Lus10029268 [exp]	5.7	0.9368
AT3G55520			FKBP-like peptidyl-prolyl cis-...		Lus10040280 [exp]	8.7	0.9339
AT4G23980	ARF	ARF9	auxin response factor 9 (.1.2)		Lus10032414 [exp]	12.0	0.9226
AT3G07040		RPS3, RPM1	RESISTANCE TO PSEUDOMONAS SYRI...		Lus10018937 [exp]	13.1	0.9130
AT1G68940			Armadillo/beta-catenin-like re...		Lus10029112 [exp]	14.1	0.9299
					Lus10040954 [exp]	15.2	0.9219

Compare expression of checked genes

Lus10014418 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.