Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G03455 178 / 2e-55 ACR2, ARATH;CDC25, CDC25 ARSENATE REDUCTASE 2, Rhodanese/Cell cycle control phosphatase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023923 [exp] 474 / 1e-168 AT5G03455 195 / 4e-62 ARSENATE REDUCTASE 2, Rhodanese/Cell cycle control phosphatase superfamily protein (.1) Lus10022616 [exp] 176 / 9e-55 AT5G03455 220 / 3e-75 ARSENATE REDUCTASE 2, Rhodanese/Cell cycle control phosphatase superfamily protein (.1) Lus10021515 [exp] 176 / 1e-54 AT5G03455 222 / 3e-76 ARSENATE REDUCTASE 2, Rhodanese/Cell cycle control phosphatase superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G122700 [exp] 173 / 1e-53 AT5G03455 218 / 2e-74 ARSENATE REDUCTASE 2, Rhodanese/Cell cycle control phosphatase superfamily protein (.1) Potri.004G065500 [exp] 60 / 2e-10 ND /
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0031 [flax] [poplar] Phosphatase PF00581 [flax] [poplar] Rhodanese Rhodanese-like domain
Representative CDS sequence Show only first row Show all	>Lus10014420 pacid=23143699 polypeptide=Lus10014420 locus=Lus10014420.g ID=Lus10014420.BGIv1.0 annot-version=v1.0 ATGGAGATCGGCGACGAAGCTTCTCATCCGGTAGTGTCTCGACGAAGCATCTCCTACATAACCAGCACTGAGCTCCTCTCCCTCAAGGATCGCCCCGGTC TCGCTGTGATTGATGTCAGGGACGACGAGAGGATCGATGATGGACATATAGCAGGGTCGCTTCACTACGCGAGCGGTGGTTTCGGGGACAGGATGCCTGA TCTTCTTCAGGAGGTGAAAGGGAAAGATACGCTTGTCTTCCATTGCGCGCTGAGCCAGGTTCGTGGCCCAAAATGTGCACGAAGGCTCGCAAATTATCTG GATGAACTGAAAGAAGAGACCGGGGTGAAAACAGTAATGGTACTAGAACGTGGCTTCAACGGCTGGGAGGCTGCTGGTAAACCTGTTTGCCACTGCGCTG AGAGTTGCAGAATGAAACCGTCGTCATCGCACTCCAAGTTCTTCTCCTCTCTGAAGCAGGTGGAGAAAAGACTGAAGCTTGAATCAAACAGCGAACCGAA CAAAAGCCAACAATCTCCACAGCTATCTCCGTCGCTAAGCACGCCGATCAATCTATACTACTCCGACGATCGTTCCGCCGCCGCAGCCGACAGCTCACTC AATCTCCAACAAGAAAGCAGCGAGCCGCCGTCAGCCTTTCTCTCATCTCCGTCAAAACCCCATGGAACCCCACTGCCAGAAACACCAGCCGCCGCAGGGG AAGTTTTCCCTTTATCATCATCAGATGATGGTGATATCCATGTGTTGATGGAACTGTTGGGTTTGTCGGATTCAGGTGAGAACAACAGTAACGATAATAA TGATGAGATTGTTCGTGGAGATGGGTTTTTCGAGAGGAATCTGGGTGTGAAGAGCGAAGAAGAAGTGAGGAGATTGAATGGATGGATTAAATGGCATATG AGAGATGGAGTTGTAGAGGAGGAGCCGTTCAGGTTGGCTCTTTTGCTGCTGGGTAAGGCTGCTTTGAAGTTGGAGAGTTGTGATAATGGCGACTGCCTGG AGTTTCCTTCCGCCATTGATGAGTATTTGAAGGTCGATCCGCCGCCTAGGGAATGA
AA sequence Show only first row Show all	>Lus10014420 pacid=23143699 polypeptide=Lus10014420 locus=Lus10014420.g ID=Lus10014420.BGIv1.0 annot-version=v1.0 MEIGDEASHPVVSRRSISYITSTELLSLKDRPGLAVIDVRDDERIDDGHIAGSLHYASGGFGDRMPDLLQEVKGKDTLVFHCALSQVRGPKCARRLANYL DELKEETGVKTVMVLERGFNGWEAAGKPVCHCAESCRMKPSSSHSKFFSSLKQVEKRLKLESNSEPNKSQQSPQLSPSLSTPINLYYSDDRSAAAADSSL NLQQESSEPPSAFLSSPSKPHGTPLPETPAAAGEVFPLSSSDDGDIHVLMELLGLSDSGENNSNDNNDEIVRGDGFFERNLGVKSEEEVRRLNGWIKWHM RDGVVEEEPFRLALLLLGKAALKLESCDNGDCLEFPSAIDEYLKVDPPPRE

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G03455		ACR2, ARATH;CDC...	ARSENATE REDUCTASE 2, Rhodanes...		Lus10014420 [exp]	0	1
AT5G57280		RID2	root initiation defective 2, S...		Lus10015533 [exp]	1.4	0.9104
					Lus10038430 [exp]	2.2	0.8914
AT5G45890		SAG12	senescence-associated gene 12 ...		Lus10004781 [exp]	2.8	0.9093
AT1G24020		MLP423	MLP-like protein 423 (.1.2)		Lus10029184 [exp]	3.0	0.8984
AT4G04750			Major facilitator superfamily ...		Lus10018957 [exp]	3.5	0.8862
AT4G37990		CAD-B2, ATCAD8,...	CINNAMYL-ALCOHOL DEHYDROGENASE...		Lus10038536 [exp]	4.0	0.8931
AT4G18050		ABCB9, PGP9	ATP-binding cassette B9, P-gly...		Lus10004583 [exp]	6.6	0.8622
AT5G17230		PSY	PHYTOENE SYNTHASE (.1.2.3)		Lus10001050 [exp]	7.0	0.8756
AT1G69490	NAC	NAP, ANAC029, A...	Arabidopsis NAC domain contain...		Lus10026617 [exp]	8.1	0.8419
AT1G49570			Peroxidase superfamily protein...		Lus10023858 [exp]	10.0	0.8448

Compare expression of checked genes

Lus10014420 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.