Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G03380 137 / 3e-36 Heavy metal transport/detoxification superfamily protein (.1.2) AT2G36950 135 / 2e-35 Heavy metal transport/detoxification superfamily protein (.1) AT5G60800 105 / 1e-25 Heavy metal transport/detoxification superfamily protein (.1.2) AT3G02960 79 / 2e-16 Heavy metal transport/detoxification superfamily protein (.1) AT5G50740 77 / 1e-15 Heavy metal transport/detoxification superfamily protein (.1.2.3.4) AT2G28090 74 / 8e-15 Heavy metal transport/detoxification superfamily protein (.1) AT5G24580 69 / 8e-13 Heavy metal transport/detoxification superfamily protein (.1.2.3) AT5G63530 65 / 3e-11 ATFP3 ARABIDOPSIS THALIANA FARNESYLATED PROTEIN 3, farnesylated protein 3 (.1.2) AT1G29000 64 / 4e-11 Heavy metal transport/detoxification superfamily protein (.1) AT4G38580 56 / 3e-09 HIPP26, ATFP6 HEAVY METAL ASSOCIATED ISOPRENYLATED PLANT PROTEIN 26, farnesylated protein 6 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023924 [exp] 255 / 6e-82 AT5G03380 180 / 6e-54 Heavy metal transport/detoxification superfamily protein (.1.2) Lus10021516 [exp] 184 / 2e-53 AT5G03380 202 / 2e-61 Heavy metal transport/detoxification superfamily protein (.1.2) Lus10022617 [exp] 179 / 3e-51 AT2G36950 178 / 2e-51 Heavy metal transport/detoxification superfamily protein (.1) Lus10021432 [exp] 110 / 6e-27 AT5G60800 158 / 1e-46 Heavy metal transport/detoxification superfamily protein (.1.2) Lus10016133 [exp] 110 / 2e-26 AT5G60800 175 / 3e-52 Heavy metal transport/detoxification superfamily protein (.1.2) Lus10032245 [exp] 96 / 8e-24 AT2G36950 79 / 2e-18 Heavy metal transport/detoxification superfamily protein (.1) Lus10038785 [exp] 80 / 1e-16 AT5G50740 183 / 6e-57 Heavy metal transport/detoxification superfamily protein (.1.2.3.4) Lus10039074 [exp] 79 / 2e-16 AT5G50740 182 / 8e-57 Heavy metal transport/detoxification superfamily protein (.1.2.3.4) Lus10032923 [exp] 74 / 2e-14 AT5G24580 313 / 1e-106 Heavy metal transport/detoxification superfamily protein (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G093100 [exp] 173 / 3e-50 AT2G36950 123 / 5e-32 Heavy metal transport/detoxification superfamily protein (.1) Potri.006G124800 [exp] 167 / 6e-48 AT2G36950 135 / 2e-36 Heavy metal transport/detoxification superfamily protein (.1) Potri.009G007600 [exp] 120 / 3e-30 AT5G60800 157 / 1e-45 Heavy metal transport/detoxification superfamily protein (.1.2) Potri.004G214700 [exp] 111 / 4e-27 AT5G60800 142 / 7e-40 Heavy metal transport/detoxification superfamily protein (.1.2) Potri.006G006100 [exp] 79 / 1e-16 AT5G50740 143 / 2e-41 Heavy metal transport/detoxification superfamily protein (.1.2.3.4) Potri.016G017600 [exp] 77 / 3e-16 AT3G02960 199 / 2e-64 Heavy metal transport/detoxification superfamily protein (.1) Potri.016G006600 [exp] 78 / 6e-16 AT5G50740 153 / 5e-45 Heavy metal transport/detoxification superfamily protein (.1.2.3.4) Potri.012G007300 [exp] 75 / 9e-15 AT5G24580 251 / 5e-82 Heavy metal transport/detoxification superfamily protein (.1.2.3) Potri.015G099500 [exp] 72 / 7e-14 AT5G50740 214 / 7e-68 Heavy metal transport/detoxification superfamily protein (.1.2.3.4) Potri.012G101400 [exp] 70 / 6e-13 AT5G63530 204 / 2e-63 ARABIDOPSIS THALIANA FARNESYLATED PROTEIN 3, farnesylated protein 3 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00403 [flax] [poplar] HMA Heavy-metal-associated domain
Representative CDS sequence Show only first row Show all	>Lus10014421 pacid=23143744 polypeptide=Lus10014421 locus=Lus10014421.g ID=Lus10014421.BGIv1.0 annot-version=v1.0 ATGGGTGCCGACGGAGGAAAACCCGATGTCGAGAAGAAGCCGGCGGCAGTAGTCGAAGCCGCCGCCCCCGCCGCAGATAAGAAAGACGACGGAGGGAAGG TCGTCTCCATCTACAAGATGGATATGCATTGTGAAGGCTGTGCCAAAAAGATCCGCCGCGCTGTAAAGCACATGGACGGCGTGGAAGATGCGAGGACGGA TTTCGCTTCCAACAAGCTGACGGTGACCGGTAAGGTCGATCCGGGGAAGGTGAAGGCTAGGGTTGAGGAGAAAATAAAGAAGACGGTTGAGATTATATCT CCTCAACCGAAGAAGGAAGGCGGTGGAGGCGGTGGGGCTCCGCCTGCTGCTGATAAGAAGGCCGAGAAGAAGCCGGCGGAGGAGGAGAAAAAGCCCACGG CGGAGGAGAAGAAACCGGCTCCACCTAAAGAGAGTACCGTTGTGATGAAGATTAGGACTCATTGCGATGGTTGTATTACCAAAATGAACAAGATCATTAA GAAAATTAATGGAGTTGACAGCGTAGCAATTGACGGTGCTAAAGACTTGGTAACGGTGAAAGGAACCATGGACGTTAATGAGCTGGCTCCTTACCTGAAG GAGAAGCTCCGGCGTAACGTGGATGTGATCCCGCCGGCGAAGAAGGACGATGACAAGAAAGACGCCGCAGCAGGAGGCGGCGGAACAGAAAAGAAGGAGA AGGCCAAGGAGAGCGGCGGGCAGGAACCCAAGACCGAGAAGAAAGAAGGAGACGGCGGCGGAAAGAAAGCAGAGGCCGTCGCAGCTCCTCCCGCCGGCGG CGGAGGCGCGCCTAAGATGGAGATTAATAAAATGGAGTATCAAGGCTACTCGCAGGCGTCGTCCTCGTCGAACTACTGGCACGACGGATCGTACGGTCAG AGCAGCTACTACGCGCAGCCGCCGCATGGGCAGCAGTTTCTCCACGGCATGGAGGCGCAGCACTGGGCCCCGAGAGCGCGCCNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNTAA
AA sequence Show only first row Show all	>Lus10014421 pacid=23143744 polypeptide=Lus10014421 locus=Lus10014421.g ID=Lus10014421.BGIv1.0 annot-version=v1.0 MGADGGKPDVEKKPAAVVEAAAPAADKKDDGGKVVSIYKMDMHCEGCAKKIRRAVKHMDGVEDARTDFASNKLTVTGKVDPGKVKARVEEKIKKTVEIIS PQPKKEGGGGGGAPPAADKKAEKKPAEEEKKPTAEEKKPAPPKESTVVMKIRTHCDGCITKMNKIIKKINGVDSVAIDGAKDLVTVKGTMDVNELAPYLK EKLRRNVDVIPPAKKDDDKKDAAAGGGGTEKKEKAKESGGQEPKTEKKEGDGGGKKAEAVAAPPAGGGGAPKMEINKMEYQGYSQASSSSNYWHDGSYGQ SSYYAQPPHGQQFLHGMEAQHWAPRARXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G03380			Heavy metal transport/detoxifi...		Lus10014421 [exp]	0	1
AT3G30390			Transmembrane amino acid trans...		Lus10035140 [exp]	2.8	0.9452
AT1G54130		AT-RSH3, RSH3, ...	RELA/SPOT homolog 3 (.1)		Lus10022102 [exp]	3.7	0.9288
AT5G61430	NAC	ANAC100, ATNAC5	NAC domain containing protein ...		Lus10021659 [exp]	4.1	0.9250
AT3G49390		CID10	CTC-interacting domain 10 (.1....		Lus10008851 [exp]	4.2	0.9359
AT1G12440			A20/AN1-like zinc finger famil...		Lus10008912 [exp]	5.5	0.9289
AT4G39090		EMB3005, RD19A,...	RESPONSIVE TO DEHYDRATION 19A,...		Lus10028797 [exp]	6.5	0.9257
AT5G62740		AtHIR4, ATHIR1	hypersensitive induced reactio...		Lus10033099 [exp]	7.3	0.9148
AT2G33150		PED1, KAT2, PKT...	PEROXISOME DEFECTIVE 1, 3-KETO...		Lus10023672 [exp]	8.5	0.9163
AT1G58030		CAT2	cationic amino acid transporte...		Lus10020320 [exp]	8.5	0.9235
AT1G22380		ATUGT85A3	UDP-glucosyl transferase 85A3 ...		Lus10024583 [exp]	9.2	0.9209

Compare expression of checked genes

Lus10014421 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.