Plant FIBer expression Database

Lus10014422 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT3G46100 675 / 0 ATHRS1 Histidyl-tRNA synthetase 1 (.1)
AT5G03406 329 / 9e-111 Class II aaRS and biotin synthetases superfamily protein (.1)
AT3G02760 125 / 4e-30 Class II aaRS and biotin synthetases superfamily protein (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10023925
[exp]
880 / 0 AT3G46100 760 / 0.0 Histidyl-tRNA synthetase 1 (.1)
Lus10041073
[exp]
119 / 4e-28 AT3G02760 973 / 0.0 Class II aaRS and biotin synthetases superfamily protein (.1)
Lus10030341
[exp]
119 / 5e-28 AT3G02760 972 / 0.0 Class II aaRS and biotin synthetases superfamily protein (.1)
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.006G124400
[exp]
701 / 0 AT3G46100 636 / 0.0 Histidyl-tRNA synthetase 1 (.1)
Potri.019G071400
[exp]
112 / 3e-26 AT3G02760 879 / 0.0 Class II aaRS and biotin synthetases superfamily protein (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0458 IIaaRS-ABD PF03129 HGTP_anticodon Anticodon binding domain
CL0040 tRNA_synt_II PF00587 tRNA-synt_2b tRNA synthetase class II core domain (G, H, P, S and T)
Representative CDS sequence
>Lus10014422 pacid=23143670 polypeptide=Lus10014422 locus=Lus10014422.g ID=Lus10014422.BGIv1.0 annot-version=v1.0
ATGCCTCCGATGACTTCCTCGCTTCACGTCGTCAGTCCGCGCATCTTCCTCCGCCTGAAACCTTTCTTCACTTCTCTCCCTCAATTGTCTCCTTCGGCTA
TTTCACCACGTAAGTTCGTCGCGCCGACAATCAATCGTAGTGCTCGATTCTGCGCGGCCGCCGCACGAGGCAATGGCGGGAGGTCCGGTGCGATTTCAGG
ACCTCCGGTGATGGAAGGAGAAGAAGCGGCGACGAAGATCGACGTGAATCCTCCTAAAGGCACGAGAGATTTCCCTCCCGAGGAAATGCGGCTCCGCAAT
TGGCTTTTCCACAATTTCAAAGAGGTGTCGAGGTTGTATGGATTCGAAGAGGTTGATTTCCCGGTGTTGGAGTCAGAGGCTCTGTTCATAAGGAAAGCTG
GGGAGGAAATCAGGGACCAGTTATACTGTTTCGAAGATCGTGGGAATCGCCGTGTGGCGTTGAGACCCGAGCTGACACCTTCTCTGGCAAGACTGGTCAT
TCAAAAAGGAAAATCTGCACCCTTGCCATTGAAGTGGTTTGCTGTTGGACAGTGTTGGCGGTATGAGAGGATGACCAGAGGAAGACGGCGTGAACACTAC
CAATGGAATATGGATATTATTGGTGTCCCTGAGGTCACTGCTGAAGCAGAGCTCATTTCTTCTATTGTTACATTTTTCAAGCGAATTGGAATCACAGCTG
CTGATGTTGGATTTAAGGTCTCAAGCAGAAAGGTTTTGCAGGAACTATTGCGGCGGTACTCTATATCTGAAAAGGAGTTCGGCAAGGTCTGCGTCATAAT
AGACAAGATTGAAAAAATGCCAATAGAAGAAATTAAGAAAGACTTGTCTTCTGTCGGTTTGTCAGAAGATGTCATCCAGGAGCTGCTACAGGTCCTTACA
GTAAAATCCTTGACAAAATTGGAAGAGATACTTGGAGGTTATGGAGAAGCAGTTTCTGATCTTAAACAACTATTCTCTCTTGCTGAGAAGTTTGGCTACT
CTGAGTGGATTCAGTTTGACGCATCAGTAGTTCGTGGCCTTGCTTATTATACTGGTATTGTTTTCGAGGGTTTTGATAGAGATGGAAAGTTGAGAGCAAT
TTGTGGTGGCGGCAGATATGATCGCTTGCTCTCGACGTTCGGTGGGGACGATCTCCCAGCGTGTGGCTTTGGATTCGGGGACGCTGTCATTGTCGAACTT
CTAAAGGAGAAGAATCTCATGCCAGAATTGAGCCTCCAAGTAGACAACATAGTGTGCGCCCTCGATCAAAACCTTCAAGCAGAAGCTGCTGGAATCGCTA
CGAATCTAAGACAGAAAGGCCAAAGCACCGATCTAGTCTTGGAAAACAAATCTCTGAAATGGGTCTTCAAACGCGCAGCACGAGCAAATGCACAAAGGGT
GATACTGGTAGGCACAAAAGAGTGGGAAAAGGGTATGGTAAGTGTGAAAATCCTCGCGTCAAATGAACAATACGAGGTTAAGGTTGACGAACTAGATTAG
AA sequence
>Lus10014422 pacid=23143670 polypeptide=Lus10014422 locus=Lus10014422.g ID=Lus10014422.BGIv1.0 annot-version=v1.0
MPPMTSSLHVVSPRIFLRLKPFFTSLPQLSPSAISPRKFVAPTINRSARFCAAAARGNGGRSGAISGPPVMEGEEAATKIDVNPPKGTRDFPPEEMRLRN
WLFHNFKEVSRLYGFEEVDFPVLESEALFIRKAGEEIRDQLYCFEDRGNRRVALRPELTPSLARLVIQKGKSAPLPLKWFAVGQCWRYERMTRGRRREHY
QWNMDIIGVPEVTAEAELISSIVTFFKRIGITAADVGFKVSSRKVLQELLRRYSISEKEFGKVCVIIDKIEKMPIEEIKKDLSSVGLSEDVIQELLQVLT
VKSLTKLEEILGGYGEAVSDLKQLFSLAEKFGYSEWIQFDASVVRGLAYYTGIVFEGFDRDGKLRAICGGGRYDRLLSTFGGDDLPACGFGFGDAVIVEL
LKEKNLMPELSLQVDNIVCALDQNLQAEAAGIATNLRQKGQSTDLVLENKSLKWVFKRAARANAQRVILVGTKEWEKGMVSVKILASNEQYEVKVDELD

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT3G46100 ATHRS1 Histidyl-tRNA synthetase 1 (.1... Lus10014422
[exp]
0 1
AT3G46100 ATHRS1 Histidyl-tRNA synthetase 1 (.1... Lus10023925
[exp]
7.1 0.7243
AT1G06900 Insulinase (Peptidase family M... Lus10042213
[exp]
14.4 0.7334
AT3G23790 AAE16 acyl activating enzyme 16, AMP... Lus10023224
[exp]
15.5 0.7258
AT2G45150 CDS4 cytidinediphosphate diacylglyc... Lus10009281
[exp]
22.0 0.6866
AT3G03380 DEG7, DEGP7 degradation of periplasmic pro... Lus10028521
[exp]
33.4 0.7165
AT3G60050 Pentatricopeptide repeat (PPR)... Lus10039221
[exp]
33.5 0.6459
Lus10040651
[exp]
37.5 0.6429
AT1G14780 MAC/Perforin domain-containing... Lus10034586
[exp]
42.3 0.6602
AT5G52520 PRORS1, OVA6 PROLYL-TRNA SYNTHETASE 1, OVUL... Lus10027506
[exp]
45.6 0.6826
AT3G55610 P5CS2 delta 1-pyrroline-5-carboxylat... Lus10030158
[exp]
51.5 0.6869

Lus10014422 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.