Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G03415 377 / 5e-130 E2F_DP ATDPB, DPB Transcription factor DP (.1.2) AT5G02470 228 / 9e-73 E2F_DP DPA Transcription factor DP (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023926 [exp] 536 / 0 AT5G03415 409 / 2e-142 Transcription factor DP (.1.2) Lus10022620 [exp] 427 / 1e-150 AT5G03415 393 / 6e-137 Transcription factor DP (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G124200 [exp] 432 / 5e-152 AT5G03415 392 / 1e-135 Transcription factor DP (.1.2) Potri.016G093200 [exp] 422 / 8e-148 AT5G03415 371 / 1e-127 Transcription factor DP (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0123 [flax] [poplar] HTH PF02319 [flax] [poplar] E2F_TDP E2F/DP family winged-helix DNA-binding domain CL0123 [flax] [poplar] PF08781 [flax] [poplar] DP Transcription factor DP
Representative CDS sequence Show only first row Show all	>Lus10014423 pacid=23143683 polypeptide=Lus10014423 locus=Lus10014423.g ID=Lus10014423.BGIv1.0 annot-version=v1.0 ATGGCCACTGGTGGTGGAGCCCACCAGGATGACGTGGAAAAGAGCCTATCCGCCGCCTCTGCTAGAACGAGGTCTTGGGGGACAGCCACCGCGTCCGGCG GCGGCGGGGGCTGCGGCGGTCAATCGGTGTCGACAAGTGGCAGCGTGGGCTCTCCGTCTAACGCCGCTACTCCTGCGAGCGACAGCACTTACCTCCGCCT CAACAACCTCGACATCCACGCCGACGACGCCGCTACACAGGATGCAGCTAACAAGAAGAAGAAACGAGGTCAACGGGCAGTAGGAGCTGATAAGAGCGGC AGAGGACTCAGGCAGTTTAGCATGAAAGTGTGTGAAAAGGTACAGAGCAAAGGGACAACCACTTACAATGAGGTGGCAGATGAACTTGTAGCAGAGTTTG CTGATCCTGGTGGTGGTGCTGCTGCTGCTGCAGGCTCAGACCAGGTCGTGCCACAATTTGACGAGAAAAACATACGGCGGAGGGTGTATGATGCTCTGAA TGTTCTCATGGCTTTGGATATTATATCTAAAGATAAAAAAGAAATACACTGGAAAGGTCTTCCACGGACCAGTCAGAGTGACGTCGAGGAGATGAAGAGT GAGAAGGTTTCAATTAGAAATAGGAATGAAAAGAAAGCCCAATATCTTAAAGAAATGGAAGACCAGTATGTAGGCCTTCAGAATTTGATACAGCGAAACA ATCAACTATACAGTTCTGGAAATGCTCCGAGTGGAGGTGTGTCACTGCCCTTCATCCTGGTGCAGACTCGCCCCCATGCGACTGTCGAAGTGGAAATCTC GGAAGATATGCAGCTGGTGCATTTCGACTTCAACAGCACTCCCTTTGAACTCCACGACGATAACTACGTGCTGAAAGCGATGAAGCTCGGTGAGAGACCA CCACACAACAATGGCTCGGCACCAAACATGGTAGCCAGTGGATCCAGCATGAACCACCACCACGACCAGCAGCAGCAATTCATTCCTCCTCCTGTCACAC AAAACACCCCAGTCAGGGCTACTGCTGCTGCTGCTGCAACTTCACCACCAATTCCCGGGATCATTAAATCACGGTCAAGGAACGAGCATTGA
AA sequence Show only first row Show all	>Lus10014423 pacid=23143683 polypeptide=Lus10014423 locus=Lus10014423.g ID=Lus10014423.BGIv1.0 annot-version=v1.0 MATGGGAHQDDVEKSLSAASARTRSWGTATASGGGGGCGGQSVSTSGSVGSPSNAATPASDSTYLRLNNLDIHADDAATQDAANKKKKRGQRAVGADKSG RGLRQFSMKVCEKVQSKGTTTYNEVADELVAEFADPGGGAAAAAGSDQVVPQFDEKNIRRRVYDALNVLMALDIISKDKKEIHWKGLPRTSQSDVEEMKS EKVSIRNRNEKKAQYLKEMEDQYVGLQNLIQRNNQLYSSGNAPSGGVSLPFILVQTRPHATVEVEISEDMQLVHFDFNSTPFELHDDNYVLKAMKLGERP PHNNGSAPNMVASGSSMNHHHDQQQQFIPPPVTQNTPVRATAAAAATSPPIPGIIKSRSRNEH

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G03415	E2F_DP	ATDPB, DPB	Transcription factor DP (.1.2)		Lus10014423 [exp]	0	1
AT5G10510	AP2_ERF	PLT3, AIL6	PLETHORA 3, AINTEGUMENTA-like ...		Lus10012728 [exp]	1.0	0.9507
AT1G03280			Transcription factor TFIIE, al...		Lus10011554 [exp]	2.0	0.9168
AT1G73160			UDP-Glycosyltransferase superf...		Lus10014499 [exp]	3.0	0.9102
AT4G16280		FCA	RNA binding;abscisic acid bind...		Lus10006305 [exp]	3.0	0.9194
AT3G63500			Protein of unknown function (D...		Lus10019718 [exp]	3.5	0.9157
AT3G12170			Chaperone DnaJ-domain superfam...		Lus10013402 [exp]	3.6	0.9057
AT2G48010		RKF3	receptor-like kinase in in flo...		Lus10029625 [exp]	3.9	0.9033
					Lus10027730 [exp]	6.9	0.9273
AT5G12330		LRP1	LATERAL ROOT PRIMORDIUM 1, Lat...		Lus10036032 [exp]	8.0	0.8872
AT2G25970			KH domain-containing protein (...		Lus10004446 [exp]	10.7	0.9160

Compare expression of checked genes

Lus10014423 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.