Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G25820 274 / 8e-88 Exostosin family protein (.1) AT5G11610 268 / 1e-87 Exostosin family protein (.1.2) AT5G19670 259 / 3e-82 Exostosin family protein (.1) AT4G32790 248 / 2e-78 Exostosin family protein (.1) AT4G16745 221 / 2e-68 Exostosin family protein (.1.2) AT5G37000 187 / 2e-55 Exostosin family protein (.1) AT5G03795 142 / 9e-39 Exostosin family protein (.1) AT3G07620 134 / 3e-36 Exostosin family protein (.1) AT5G25310 127 / 1e-33 Exostosin family protein (.1) AT5G20260 122 / 1e-31 Exostosin family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023927 [exp] 424 / 8e-148 AT5G25820 561 / 0.0 Exostosin family protein (.1) Lus10043239 [exp] 271 / 5e-87 AT5G19670 748 / 0.0 Exostosin family protein (.1) Lus10011121 [exp] 263 / 7e-86 AT5G19670 730 / 0.0 Exostosin family protein (.1) Lus10002799 [exp] 266 / 5e-85 AT5G25820 627 / 0.0 Exostosin family protein (.1) Lus10000608 [exp] 264 / 4e-84 AT4G32790 630 / 0.0 Exostosin family protein (.1) Lus10034951 [exp] 263 / 3e-83 AT5G19670 701 / 0.0 Exostosin family protein (.1) Lus10012973 [exp] 260 / 3e-82 AT5G19670 716 / 0.0 Exostosin family protein (.1) Lus10043238 [exp] 205 / 1e-62 AT4G32790 493 / 7e-170 Exostosin family protein (.1) Lus10011120 [exp] 204 / 9e-62 AT4G32790 501 / 1e-172 Exostosin family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G238900 [exp] 311 / 2e-101 AT5G19670 592 / 0.0 Exostosin family protein (.1) Potri.006G239000 [exp] 272 / 2e-86 AT5G25820 607 / 0.0 Exostosin family protein (.1) Potri.018G043700 [exp] 270 / 1e-85 AT5G25820 635 / 0.0 Exostosin family protein (.1) Potri.018G085500 [exp] 265 / 4e-84 AT5G19670 693 / 0.0 Exostosin family protein (.1) Potri.018G085400 [exp] 235 / 6e-73 AT5G19670 558 / 0.0 Exostosin family protein (.1) Potri.003G079000 [exp] 223 / 3e-69 AT4G16745 636 / 0.0 Exostosin family protein (.1.2) Potri.014G171100 [exp] 151 / 2e-42 AT5G03795 476 / 1e-164 Exostosin family protein (.1) Potri.006G118000 [exp] 145 / 3e-40 AT5G03795 608 / 0.0 Exostosin family protein (.1) Potri.018G025400 [exp] 143 / 3e-39 AT5G25310 518 / 0.0 Exostosin family protein (.1) Potri.014G170900 [exp] 136 / 8e-37 AT3G07620 572 / 0.0 Exostosin family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03016 [flax] [poplar] Exostosin Exostosin family
Representative CDS sequence Show only first row Show all	>Lus10014424 pacid=23143707 polypeptide=Lus10014424 locus=Lus10014424.g ID=Lus10014424.BGIv1.0 annot-version=v1.0 ATGTCCAATGGTGATGGTCTTGGAGGAACCATAACAAAAACTGCAAGTCTCGTCAATCGCTCCAATGTTGATTCAGAGAATGCATCTGCAGCAAGGAAAG CTATGCCACCGGTTGAGAGTGGCAGCAGCATTGTTAACCCCATTCTATTACTTCCATACATGGAGCTAAACCAGGGAAAAACAAGAAGTATAAGCCACCT TCCAAAATACCCCAATGGTCTTCCGAGGTTGACAAGGAAATGCTCCACGCAAGATCAGAAATTGAGAAAGCAGTTGTCGGGAGATGATCCGGAGCTCTAC GCACCTATTTACCGTAATGTTTCCATGTTCAAAAGGAGCTATGAGCTGATGGAGAGTTTGCTGACAGTGTATGTATACCAAGATGGCGATAAACCGATCT TCCACGAGTATATACTCGAGGGGATATATGCTTCTGAAGGATGGTTTATGAAGCTTATGGAGAACAGCAAACATTTCGTAACGAAAGACCCTTCAAAAGC TCACTTGTTCTACATTCCGTTCAGTTCGCGACTTCTGGAGTTGAAGCTCTACGTGAGGAAGTCTCACAGCCGCTTAAACCTTGTTGAATACATGAAAAGC TTTGTAGATATGCTGGGAGAGAAATATCCTTTCTGGAACCGAATCAGTGGAACTGATCATTTCGTTGCTGCCTGCCATGACTGGGCACCGGCTGAAACAA GGGGTCGTATGCTGAAATCCATCAGAGCGCTTTGTAATTCCGACCTGGAAGTTGGTTTTAGCATAGGCAAAGATGTGTCCCTTCCGGAAACATATGTGGG ATCAGCTCAGAATCCTCTTAAAAACTAA
AA sequence Show only first row Show all	>Lus10014424 pacid=23143707 polypeptide=Lus10014424 locus=Lus10014424.g ID=Lus10014424.BGIv1.0 annot-version=v1.0 MSNGDGLGGTITKTASLVNRSNVDSENASAARKAMPPVESGSSIVNPILLLPYMELNQGKTRSISHLPKYPNGLPRLTRKCSTQDQKLRKQLSGDDPELY APIYRNVSMFKRSYELMESLLTVYVYQDGDKPIFHEYILEGIYASEGWFMKLMENSKHFVTKDPSKAHLFYIPFSSRLLELKLYVRKSHSRLNLVEYMKS FVDMLGEKYPFWNRISGTDHFVAACHDWAPAETRGRMLKSIRALCNSDLEVGFSIGKDVSLPETYVGSAQNPLKN

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G25820			Exostosin family protein (.1)		Lus10014424 [exp]	0	1
AT4G32790			Exostosin family protein (.1)		Lus10014425 [exp]	1.0	0.9656
AT2G40690		SFD1, GLY1	SUPPRESSOR OF FATTY ACID DESAT...		Lus10034238 [exp]	3.0	0.8563
AT1G13680			PLC-like phosphodiesterases su...		Lus10031973 [exp]	5.1	0.8593
AT4G24040		TREHALASE1, ATT...	trehalase 1 (.1)		Lus10032435 [exp]	5.5	0.8305
AT3G62930			Thioredoxin superfamily protei...		Lus10005940 [exp]	6.0	0.8433
AT1G50420	GRAS	SCL-3, SCL3	scarecrow-like 3 (.1)		Lus10016892 [exp]	8.1	0.8426
AT2G24610		ATCNGC14	cyclic nucleotide-gated channe...		Lus10026233 [exp]	9.2	0.7839
AT3G04910		ATWNK1, ZIK4, W...	with no lysine (K) kinase 1 (....		Lus10010547 [exp]	10.2	0.8126
					Lus10018970 [exp]	13.9	0.8254
AT2G26650		AKT1, ATAKT1	K+ transporter 1, K+ transport...		Lus10017765 [exp]	14.1	0.8248

Compare expression of checked genes

Lus10014424 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.