Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G32790 187 / 1e-57 Exostosin family protein (.1) AT5G25820 185 / 2e-56 Exostosin family protein (.1) AT5G19670 174 / 2e-52 Exostosin family protein (.1) AT5G11610 160 / 6e-48 Exostosin family protein (.1.2) AT5G37000 155 / 1e-45 Exostosin family protein (.1) AT4G16745 153 / 4e-45 Exostosin family protein (.1.2) AT5G03795 128 / 8e-36 Exostosin family protein (.1) AT3G07620 127 / 1e-35 Exostosin family protein (.1) AT5G25310 122 / 1e-33 Exostosin family protein (.1) AT5G11130 114 / 1e-30 Exostosin family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023927 [exp] 241 / 7e-79 AT5G25820 561 / 0.0 Exostosin family protein (.1) Lus10002799 [exp] 191 / 1e-58 AT5G25820 627 / 0.0 Exostosin family protein (.1) Lus10000608 [exp] 190 / 2e-58 AT4G32790 630 / 0.0 Exostosin family protein (.1) Lus10012973 [exp] 178 / 7e-54 AT5G19670 716 / 0.0 Exostosin family protein (.1) Lus10043238 [exp] 176 / 9e-54 AT4G32790 493 / 7e-170 Exostosin family protein (.1) Lus10011120 [exp] 175 / 3e-53 AT4G32790 501 / 1e-172 Exostosin family protein (.1) Lus10034951 [exp] 177 / 4e-53 AT5G19670 701 / 0.0 Exostosin family protein (.1) Lus10011121 [exp] 171 / 2e-52 AT5G19670 730 / 0.0 Exostosin family protein (.1) Lus10043239 [exp] 171 / 3e-51 AT5G19670 748 / 0.0 Exostosin family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G238900 [exp] 208 / 2e-64 AT5G19670 592 / 0.0 Exostosin family protein (.1) Potri.018G043700 [exp] 181 / 1e-54 AT5G25820 635 / 0.0 Exostosin family protein (.1) Potri.006G239000 [exp] 179 / 8e-54 AT5G25820 607 / 0.0 Exostosin family protein (.1) Potri.018G085400 [exp] 174 / 2e-52 AT5G19670 558 / 0.0 Exostosin family protein (.1) Potri.018G085500 [exp] 166 / 2e-49 AT5G19670 693 / 0.0 Exostosin family protein (.1) Potri.003G079000 [exp] 156 / 3e-46 AT4G16745 636 / 0.0 Exostosin family protein (.1.2) Potri.014G171100 [exp] 135 / 1e-38 AT5G03795 476 / 1e-164 Exostosin family protein (.1) Potri.006G118000 [exp] 130 / 2e-36 AT5G03795 608 / 0.0 Exostosin family protein (.1) Potri.014G170900 [exp] 124 / 2e-34 AT3G07620 572 / 0.0 Exostosin family protein (.1) Potri.018G025400 [exp] 117 / 4e-32 AT5G25310 518 / 0.0 Exostosin family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03016 [flax] [poplar] Exostosin Exostosin family
Representative CDS sequence Show only first row Show all	>Lus10014425 pacid=23143731 polypeptide=Lus10014425 locus=Lus10014425.g ID=Lus10014425.BGIv1.0 annot-version=v1.0 ATGAGGATCACCGGTCCAATGCCTCATGTGAAGGGTGGCAGAAACTACATTGAAATGATGAAGAACAGCAAGTTTTGTATTTGTCCGAGAGGGTTTGAAG TGAACAGTCCACGGATCGTGGAGTCCATATTCTTCGAGTGTGTTCCTGTGATCATCTCGGATAACTTTGTGCCGCCGTTTTTTGAGGTTCTGGAGTGGGA ATCGTTTGCTGTGTTTGTGTTGGAGAAGGATATTCCGAACTTGAAGAAGATACTTGTGTCGATATCGGAGGAGAGGTATATGGAGATGCATAAGACGGTG AAAATGGTGCTGAAGCATTTTCTTTGGCATGATCAGCCTGTCAAGTATGATTTGTTTCATATGCATATGGTATAA
AA sequence Show only first row Show all	>Lus10014425 pacid=23143731 polypeptide=Lus10014425 locus=Lus10014425.g ID=Lus10014425.BGIv1.0 annot-version=v1.0 MRITGPMPHVKGGRNYIEMMKNSKFCICPRGFEVNSPRIVESIFFECVPVIISDNFVPPFFEVLEWESFAVFVLEKDIPNLKKILVSISEERYMEMHKTV KMVLKHFLWHDQPVKYDLFHMHMV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G32790			Exostosin family protein (.1)		Lus10014425 [exp]	0	1
AT5G25820			Exostosin family protein (.1)		Lus10014424 [exp]	1.0	0.9656
AT2G40690		SFD1, GLY1	SUPPRESSOR OF FATTY ACID DESAT...		Lus10034238 [exp]	1.7	0.8645
AT3G62930			Thioredoxin superfamily protei...		Lus10005940 [exp]	2.4	0.8651
AT2G26650		AKT1, ATAKT1	K+ transporter 1, K+ transport...		Lus10017765 [exp]	6.6	0.8620
AT5G28840		GME	"GDP-D-mannose 3',5'-epimerase...		Lus10020247 [exp]	8.4	0.8401
AT4G09820	bHLH	BHLH42, TT8, bH...	TRANSPARENT TESTA 8, basic hel...		Lus10022032 [exp]	9.5	0.7923
AT1G65390		ATPP2-A5	phloem protein 2 A5 (.1.2)		Lus10018301 [exp]	10.2	0.8374
AT4G28570			Long-chain fatty alcohol dehyd...		Lus10021165 [exp]	11.5	0.8379
AT1G50420	GRAS	SCL-3, SCL3	scarecrow-like 3 (.1)		Lus10016892 [exp]	11.7	0.8372
AT1G13680			PLC-like phosphodiesterases su...		Lus10031973 [exp]	12.4	0.8351

Compare expression of checked genes

Lus10014425 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.