Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G36910 1742 / 0 ATMDR1, ATPGP1, PGP1, ABCB1 P-GLYCOPROTEIN 1, ARABIDOPSIS THALIANA P GLYCOPROTEIN1, ATP-binding cassette B1, ATP binding cassette subfamily B1 (.1) AT3G28860 1019 / 0 ABCB19, ATMDR11, ATMDR1, PGP19, MDR11, MDR1, ATPGP19, ATABCB19 P-GLYCOPROTEIN 19, MULTIDRUG RESISTANCE PROTEIN 11, Arabidopsis thaliana ATP-binding cassette B19, ATP-binding cassette B19, ATP binding cassette subfamily B19 (.1) AT4G25960 923 / 0 ABCB2, PGP2 ATP-binding cassette B2, P-glycoprotein 2 (.1) AT1G10680 916 / 0 ABCB10, PGP10 ATP-binding cassette B10, P-glycoprotein 10 (.1) AT1G28010 883 / 0 MDR12, ATABCB14, ABCB14, PGP14 multi-drug resistance 12, Arabidopsis thaliana ATP-binding cassette B14, ATP-binding cassette B14, P-glycoprotein 14 (.1) AT3G28345 813 / 0 MDR13, ABCB15 multi-drug resistance 13, ATP-binding cassette B15, ABC transporter family protein (.1) AT3G28390 809 / 0 ABCB18, PGP18 ATP-binding cassette B18, P-glycoprotein 18 (.1) AT2G47000 803 / 0 PGP4 ,MDR4, ABCB4, ATPGP4 MULTIDRUG RESISTANCE 4, ARABIDOPSIS P-GLYCOPROTEIN 4, ATP-binding cassette B4, ATP binding cassette subfamily B4 (.1) AT3G28360 797 / 0 ABCB16, PGP16 ATP-binding cassette B16, P-glycoprotein 16 (.1) AT3G28415 795 / 0 ABCB22 ATP-binding cassette B22, ABC transporter family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023929 [exp] 1966 / 0 AT2G36910 2300 / 0.0 P-GLYCOPROTEIN 1, ARABIDOPSIS THALIANA P GLYCOPROTEIN1, ATP-binding cassette B1, ATP binding cassette subfamily B1 (.1) Lus10030674 [exp] 1024 / 0 AT3G28860 2271 / 0.0 P-GLYCOPROTEIN 19, MULTIDRUG RESISTANCE PROTEIN 11, Arabidopsis thaliana ATP-binding cassette B19, ATP-binding cassette B19, ATP binding cassette subfamily B19 (.1) Lus10005249 [exp] 1023 / 0 AT3G28860 2267 / 0.0 P-GLYCOPROTEIN 19, MULTIDRUG RESISTANCE PROTEIN 11, Arabidopsis thaliana ATP-binding cassette B19, ATP-binding cassette B19, ATP binding cassette subfamily B19 (.1) Lus10004571 [exp] 950 / 0 AT4G25960 1732 / 0.0 ATP-binding cassette B2, P-glycoprotein 2 (.1) Lus10017271 [exp] 904 / 0 AT1G27940 1689 / 0.0 ATP-binding cassette B13, P-glycoprotein 13 (.1) Lus10017270 [exp] 882 / 0 AT1G27940 1686 / 0.0 ATP-binding cassette B13, P-glycoprotein 13 (.1) Lus10005839 [exp] 848 / 0 AT3G28345 1834 / 0.0 multi-drug resistance 13, ATP-binding cassette B15, ABC transporter family protein (.1) Lus10039458 [exp] 844 / 0 AT3G28345 1835 / 0.0 multi-drug resistance 13, ATP-binding cassette B15, ABC transporter family protein (.1) Lus10041565 [exp] 840 / 0 AT3G28345 1804 / 0.0 multi-drug resistance 13, ATP-binding cassette B15, ABC transporter family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G093600 [exp] 1795 / 0 AT2G36910 2120 / 0.0 P-GLYCOPROTEIN 1, ARABIDOPSIS THALIANA P GLYCOPROTEIN1, ATP-binding cassette B1, ATP binding cassette subfamily B1 (.1) Potri.006G123900 [exp] 1788 / 0 AT2G36910 2138 / 0.0 P-GLYCOPROTEIN 1, ARABIDOPSIS THALIANA P GLYCOPROTEIN1, ATP-binding cassette B1, ATP binding cassette subfamily B1 (.1) Potri.017G081100 [exp] 1029 / 0 AT3G28860 2107 / 0.0 P-GLYCOPROTEIN 19, MULTIDRUG RESISTANCE PROTEIN 11, Arabidopsis thaliana ATP-binding cassette B19, ATP-binding cassette B19, ATP binding cassette subfamily B19 (.1) Potri.003G094400 [exp] 926 / 0 AT4G25960 2000 / 0.0 ATP-binding cassette B2, P-glycoprotein 2 (.1) Potri.001G139600 [exp] 922 / 0 AT4G25960 1962 / 0.0 ATP-binding cassette B2, P-glycoprotein 2 (.1) Potri.002G019600 [exp] 905 / 0 AT1G27940 1654 / 0.0 ATP-binding cassette B13, P-glycoprotein 13 (.1) Potri.001G139700 [exp] 880 / 0 AT4G25960 1875 / 0.0 ATP-binding cassette B2, P-glycoprotein 2 (.1) Potri.017G074000 [exp] 844 / 0 AT3G28345 1831 / 0.0 multi-drug resistance 13, ATP-binding cassette B15, ABC transporter family protein (.1) Potri.017G085000 [exp] 844 / 0 AT3G28345 1774 / 0.0 multi-drug resistance 13, ATP-binding cassette B15, ABC transporter family protein (.1) Potri.014G113500 [exp] 817 / 0 AT3G62150 1879 / 0.0 ATP-binding cassette B21, P-glycoprotein 21 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0241 [flax] [poplar] ABC_membrane PF00664 [flax] [poplar] ABC_membrane ABC transporter transmembrane region CL0023 [flax] [poplar] P-loop_NTPase PF00005 [flax] [poplar] ABC_tran ABC transporter
Representative CDS sequence Show only first row Show all	>Lus10014427 pacid=23143728 polypeptide=Lus10014427 locus=Lus10014427.g ID=Lus10014427.BGIv1.0 annot-version=v1.0 ATGGAAACCACCAGCAAGAACATCAACATTACTGAGCCGAAGAAGGAAGCTTCTGCTGCTTATGCGGAGAAAACAGGGGAAGTTGCAGCAGTCGGATTCA AGCAGCTCTTCAGATTCGCAGATGGCTTGGATTACGTGTTGATGGGAATTGGTTCAGTGGGTGCTTTTGTCCATGGTTGCTCCCTGCCTCTCTTTCTCAG ATTCTTCGCGGATCTTGTTAACTCGTTTGGGTCTAATGCCAATGACTTGGATAAGATGACCCAGGAAGTCTTGAAGAAATGTCGAATTCTGCTTTTTGAA GTTTCGATCTTTTACCATGTTTTGATTTGTTGTTGTTGTTTTACTTTTGCAGTATGCGTTTTACTTCCTTTGGTTCCTCTCAGAGCTGTAATCGCTGCTA TCCACACCACGACATTGGCGAAACTCTCTGGTAAAAGTCAAGAAGCTCTGTCTGAAGCTGGGAATATCGTCGAACAGACGGTGGTTCAAATCCGAGTTGT GTTTGCATACGTGGGAGAATCGAGATCGCTGTCTGGATATTCATCAGCGTTGAGAGTTGCTCAGAAGCTTGGTTACAAGAGCGGGATAGCGAAAGGACTT GGACTGGGAGGAACTTACTTTGTTGTTTTCTGCTGCTATGCTCTTCTACTATGGTACGGAGGCTACCTCGTTCGCCATCACTACACCAATGGCGGGCTCG CCATTTCTACCATGTTCGCCGTCATGATTGGAGGACTGGCATTGGGACAAGCGGCGCCGAGTATGAGCGCCTTCGCCAAAGCCAGAGTCGCGGCGGCGAA GATTTTCCGTATAATCGACCACAAGCCGGCGGTGAATCGGAACAGCAAGTCAGGTCTTGAATTGGACTCGGTGACTGGGTTGGTAGAGCTGAAGAATGTT GATTTCTCGTACCCGTCGAGGCCGGATGTCCGGATCTTGAACAATTTCTCGCTGACGGTTCCCGCCGGAAAAACCATAGCGTTAGTCGGAAGCAGCGGGT CCGGGAAGAGCACGGTGGTTTCCTTAATCGAGAGGTTCTACGATCCCGAATCTGGCCAAGTGCTGCTAGATGGGCACGAGATAAAGACAATGAAGCTCAA ATGGCTGAGGCAACAAATAGGGCTTGTGAGCCAAGAGCCAGCTTTGTTTGCAACATCAATCAAAGAGAATATACTTCTGGGCAGGCCAGATGCTGATATG GTTGAAGTTGAGGAAGCTGCAAGAGTTGTCTATCAGTCCAACAGAACTGAACCGGTGGGTGAGAGAGGACTGCAGCTGTCCGGTGGACAGAAGCAGCGAA TAGCGATAGCAAGGGCGATGCTGAAGAACCCTGCGATCCTTCTCCTGGATGAGGCAACGAGTGCATTGGACTCCGAGTCGGAGAAACTGGTTCAGGAAGC TCTTGACAGATTCATGATTGGGAGGACAACTTTGGTCATTGCCCACCGGCTTTCTACCATTCGAAAGGCTGATCTCGTGGCGGTTCTACAACAGGGTTCC GTCACTGAAATCGGGACTCATGATGAACTCTTTGCTAAAGGAGAAAACGGTGTCTATGCCAAGCTCATCAAGATGCAGGAGGCTGCACATGAAACCGCTA TGAACAATGCTAGGAAGAGCAGTGCAAGGCCTTCAAGTGCTAGGAATTCTGTAAGCTCGCCGATAATCGCAAGAAACTCATCTTATGGCCGATCGCCATA TTCCCGCAGGCTCTCTGATTTCTCCACTTCGGATTTCAGCCTCTCCTTCGACGCCATGCACACTAATTACCGGCTCGAAAAGCTTCAATTCAAGGAGCAG GCGAGTTCCTTCTGGCGACTCGCAAAGATGAATTCCCCCGAATGGGGTTATGCATTTGCTGGTTCGATTGGCTCGATCGTTTGTGGTTCCCTTAGTGCAT TCTTCGCATACGTACTGAGTGCTGTCCTTAGTATCTACTACAGCCCCAACCATGCTTACATGATCAGAGAAATCGCAAAGTACTGCTACTTGTTAATCGG ACTTTCGTCAGCTGCTCTTATCTTCAATACCTTGCAACACTCGTTCTGGGACATTGTGGGAGAGAATCTTACGAAACGGGTGAGGGAGAAGATGCTGGCT GCTGTGCTTAAAAATGAGATGGCATGGTTCGATCAGGAAGAGAATGAGAGTGCTAGAATTGCAGCAAGATTGTCTCTTGACGCGAATAATGTTCGTTCGG CCATTGGAGACCGAATTTCGGTGATTGTGCAGAATACTGCACTCTTGCTGGTTGCTTGCACTGCAGGGTTTGTCTTGCAATGGCGCCTAGCCCTTGTCCT CATTGCTGTTTTTCCAGTGGTCGTTGCAGCCACAGTTTTGCAGAAAATGTTCATGCAAGGCTTCTCAGGAGACTTGGAAGCAGCTCATGCAAAGGGCACA CAGTTAGCAGGGGAAGCCATAGCCAACGTAAGGACTGTTGCTGCCTTCAATTCAGAGATGAAGATCGTTAATCTTTACTCAAGCAACCTCCAAATCCCTC TGAAGCGCTGCTTCTGGAAGGGACAGATAGCAGGAAGTGGATATGGAATAGCTCAGTTTCTTCTCTATGCTTCCTACGCTCTTGGTCTTTGGTATGCATC ATGGCTTGTGAAGCACGGCATCTCTGATTTCTCCAAGACCATCCGAGTCTTCATGGTCCTTATGGTCTCAGCCAACGGTGCTGCCGAAACCCTTACATTA GCTCCGGACTTCATCAAAGGCGGCAGAGCAATGCGATCGGTCTTCGAACTTCTCGACCGCAAGACTGAGATCGAACCTGACGATTTGGACTCCATGCCAG TGCCGGATCAAATCCGTGGAGAGGTCGAACTTAGACATGTCGACTTTTCCTACCCTAGTCGTCCCGATGTCCCCATTTTCCGGGACCTCAGCCTTCGAGC TCGAGCTGGCAAGACTCTAGCACTGGTTGGACCGAGCGGGTCGGGGAAAAGCTCGGTCATTTCGTTGATACAACGATTCTACGATCCATCGTCTGGTAGG GTTATGATCGATGGGAAGGATATCCGAAAGTACAATCTCAAGTCCTTGAGGAAGCACATTGCTGTAGTGCCTCAAGAGCCATGTCTATTTGCTACCACCA TATATGACAACATTGCATATGGACACGAATCCGCAAGTGAAGCCGAAATCATGGAAGCTGCTACTCTAGCGAACGCACATAAGTTCGTTTCGTCGTTGCC AGATGGTTACAAGACTCATGTCGGGGAAAGAGGGGTGCAACTTTCTGGTGGACAGAAGCAGAGAATCGCCATTGCTCGAGCATTGCTCAGGAAAGCTGAG CTTATGCTGCTGGACGAGGCTACAAGTGCGTTGGACGCTGAATCGGAGAGATCGGTCCAGGAAGCTCTTGATCGAGCTTGCTCGGGGAAGACCACGATCA TTGTTGCTCATAGGCTTTCGACGATAAGGAATGCTAGTGTTATTGCGGTTATAGATGATGGGAAAGTAGCTGAGCAAGGGTCTCATTCACACTTGCTGAA GAACTACCCTGACGGGATCTATGGCAGAATGATTCAGTTGCAAAGGTTCACGAATGGCCAGGTGATCGGAATGAGTTCAGGTTCGAGTTCTTCGGCCAGG CCTAATAAGGATGATGAAGATAAAGAAGCTTAG
AA sequence Show only first row Show all	>Lus10014427 pacid=23143728 polypeptide=Lus10014427 locus=Lus10014427.g ID=Lus10014427.BGIv1.0 annot-version=v1.0 METTSKNINITEPKKEASAAYAEKTGEVAAVGFKQLFRFADGLDYVLMGIGSVGAFVHGCSLPLFLRFFADLVNSFGSNANDLDKMTQEVLKKCRILLFE VSIFYHVLICCCCFTFAVCVLLPLVPLRAVIAAIHTTTLAKLSGKSQEALSEAGNIVEQTVVQIRVVFAYVGESRSLSGYSSALRVAQKLGYKSGIAKGL GLGGTYFVVFCCYALLLWYGGYLVRHHYTNGGLAISTMFAVMIGGLALGQAAPSMSAFAKARVAAAKIFRIIDHKPAVNRNSKSGLELDSVTGLVELKNV DFSYPSRPDVRILNNFSLTVPAGKTIALVGSSGSGKSTVVSLIERFYDPESGQVLLDGHEIKTMKLKWLRQQIGLVSQEPALFATSIKENILLGRPDADM VEVEEAARVVYQSNRTEPVGERGLQLSGGQKQRIAIARAMLKNPAILLLDEATSALDSESEKLVQEALDRFMIGRTTLVIAHRLSTIRKADLVAVLQQGS VTEIGTHDELFAKGENGVYAKLIKMQEAAHETAMNNARKSSARPSSARNSVSSPIIARNSSYGRSPYSRRLSDFSTSDFSLSFDAMHTNYRLEKLQFKEQ ASSFWRLAKMNSPEWGYAFAGSIGSIVCGSLSAFFAYVLSAVLSIYYSPNHAYMIREIAKYCYLLIGLSSAALIFNTLQHSFWDIVGENLTKRVREKMLA AVLKNEMAWFDQEENESARIAARLSLDANNVRSAIGDRISVIVQNTALLLVACTAGFVLQWRLALVLIAVFPVVVAATVLQKMFMQGFSGDLEAAHAKGT QLAGEAIANVRTVAAFNSEMKIVNLYSSNLQIPLKRCFWKGQIAGSGYGIAQFLLYASYALGLWYASWLVKHGISDFSKTIRVFMVLMVSANGAAETLTL APDFIKGGRAMRSVFELLDRKTEIEPDDLDSMPVPDQIRGEVELRHVDFSYPSRPDVPIFRDLSLRARAGKTLALVGPSGSGKSSVISLIQRFYDPSSGR VMIDGKDIRKYNLKSLRKHIAVVPQEPCLFATTIYDNIAYGHESASEAEIMEAATLANAHKFVSSLPDGYKTHVGERGVQLSGGQKQRIAIARALLRKAE LMLLDEATSALDAESERSVQEALDRACSGKTTIIVAHRLSTIRNASVIAVIDDGKVAEQGSHSHLLKNYPDGIYGRMIQLQRFTNGQVIGMSSGSSSSAR PNKDDEDKEA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G36910		ATMDR1, ATPGP1,...	P-GLYCOPROTEIN 1, ARABIDOPSIS ...		Lus10014427 [exp]	0	1
AT2G20680		MAN2, AtMAN2	endo-beta-mannase 2, Glycosyl ...		Lus10039833 [exp]	1.4	0.9376
AT2G36910		ATMDR1, ATPGP1,...	P-GLYCOPROTEIN 1, ARABIDOPSIS ...		Lus10023929 [exp]	2.0	0.9195
AT3G21310			Core-2/I-branching beta-1,6-N-...		Lus10009738 [exp]	2.2	0.8879
AT1G67410			Exostosin family protein (.1)		Lus10015791 [exp]	3.5	0.8919
AT2G23200			Protein kinase superfamily pro...		Lus10012101 [exp]	3.7	0.8827
AT4G03230			S-locus lectin protein kinase ...		Lus10031592 [exp]	4.5	0.8892
AT1G67970	HSF	AT-HSFA8	heat shock transcription facto...		Lus10003707 [exp]	5.7	0.8646
AT5G60900		RLK1	receptor-like protein kinase 1...		Lus10031230 [exp]	5.7	0.8768
AT2G39450		ATMTP11	Cation efflux family protein (...		Lus10040318 [exp]	7.3	0.8870
AT2G15080		AtRLP19	receptor like protein 19 (.1.2...		Lus10039512 [exp]	7.7	0.8738

Compare expression of checked genes

Lus10014427 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.