Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G35270 635 / 0 NLP2 Plant regulator RWP-RK family protein (.1) AT2G17150 613 / 0 NLP1 Plant regulator RWP-RK family protein (.1.2) AT1G20640 559 / 0 NLP4 Plant regulator RWP-RK family protein (.1.2) AT1G76350 544 / 0 NLP5 Plant regulator RWP-RK family protein (.1) AT1G64530 380 / 2e-119 NLP6 Plant regulator RWP-RK family protein (.1) AT4G24020 378 / 2e-117 NLP7 NIN like protein 7 (.1) AT3G59580 328 / 3e-99 NLP9 Plant regulator RWP-RK family protein (.1.2) AT2G43500 312 / 8e-93 NLP8 Plant regulator RWP-RK family protein (.1.2) AT4G38340 271 / 3e-79 NLP3 Plant regulator RWP-RK family protein (.1) AT5G66990 57 / 2e-08 RKD3 RWP-RK domain-containing 3, RWP-RK domain-containing protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023930 [exp] 1492 / 0 AT4G35270 669 / 0.0 Plant regulator RWP-RK family protein (.1) Lus10016018 [exp] 551 / 0 AT1G76350 775 / 0.0 Plant regulator RWP-RK family protein (.1) Lus10012257 [exp] 517 / 1e-171 AT1G20640 785 / 0.0 Plant regulator RWP-RK family protein (.1.2) Lus10003199 [exp] 387 / 2e-120 AT4G24020 953 / 0.0 NIN like protein 7 (.1) Lus10030744 [exp] 379 / 2e-120 AT1G20640 427 / 1e-138 Plant regulator RWP-RK family protein (.1.2) Lus10023049 [exp] 353 / 1e-109 AT4G24020 783 / 0.0 NIN like protein 7 (.1) Lus10008143 [exp] 348 / 3e-106 AT3G59580 769 / 0.0 Plant regulator RWP-RK family protein (.1.2) Lus10019368 [exp] 342 / 6e-104 AT2G43500 764 / 0.0 Plant regulator RWP-RK family protein (.1.2) Lus10013224 [exp] 279 / 1e-82 AT1G20640 600 / 0.0 Plant regulator RWP-RK family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G205500 [exp] 763 / 0 AT4G35270 829 / 0.0 Plant regulator RWP-RK family protein (.1) Potri.009G166932 [exp] 651 / 0 AT4G35270 874 / 0.0 Plant regulator RWP-RK family protein (.1) Potri.009G166666 [exp] 621 / 0 AT4G35270 702 / 0.0 Plant regulator RWP-RK family protein (.1) Potri.002G009700 [exp] 609 / 0 AT1G20640 824 / 0.0 Plant regulator RWP-RK family protein (.1.2) Potri.009G166400 [exp] 602 / 0 AT4G35270 730 / 0.0 Plant regulator RWP-RK family protein (.1) Potri.016G042900 [exp] 560 / 0 AT4G35270 572 / 0.0 Plant regulator RWP-RK family protein (.1) Potri.005G251700 [exp] 531 / 2e-176 AT4G35270 739 / 0.0 Plant regulator RWP-RK family protein (.1) Potri.001G087900 [exp] 399 / 4e-125 AT4G24020 991 / 0.0 NIN like protein 7 (.1) Potri.003G143000 [exp] 389 / 6e-121 AT4G24020 994 / 0.0 NIN like protein 7 (.1) Potri.007G133400 [exp] 357 / 2e-109 AT2G43500 699 / 0.0 Plant regulator RWP-RK family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF02042 [flax] [poplar] RWP-RK RWP-RK domain CL0072 [flax] [poplar] Ubiquitin PF00564 [flax] [poplar] PB1 PB1 domain
Representative CDS sequence Show only first row Show all	>Lus10014428 pacid=23143698 polypeptide=Lus10014428 locus=Lus10014428.g ID=Lus10014428.BGIv1.0 annot-version=v1.0 ATGGATCATGATGGTGGTGGTGCCTTTACCCCCAACTCCACTTTTGAGAACTTGATCTCATCATCCACCATGGATTTGGATCCTTCCATGGATCAAATCT TTGATGAAAGGTGTTGGATGGGAACTCCTCCTGATGGATTCAGCTTCTTATCACAACCATGTCCTCCAACATCGTTGATTATACCGGAACTCCAACACCA CGGCCCGAATCCTCACCAAGACATCAACTTCCAAGGTGGAGGATACGAAAATCGTGAAGTTATCCCTCCTTCTATCAAAGACCGATTGGAATATGCAATC AGGAAGTTGAAAGAGTACACCGACCCCAGAGATGTTCTTGTACAAATATGGGTCCCCATAACTAAAGGAGGCAAGCATCTTCTCACCACCAAAGACCAGC CATACTTCATCACTCCCGAGTGCATGAACCTTGCTAGCTATCGGAATGTCTCGAAAGAGTATCATTTTGGGGCCGACTTGGATTCCCAAGTGTTGGTTGG GCTACCCGGTCGAGTCTTCTTGGGGAAGTTTCCTGAGTGGACACCGGATGTTCGCTACTTCAAACCTGAGGAGTATCCACGCCAAAGCTATGCAGCTCAA TACAGCATCAGCGGTTCTCTTGCGTTTCCTGTCTTTGAGCGGGGCAATTGGACTTGCTTGGGTGTCGTAGAGGTTATAACGACAACTCGAGATATCCAGT ACCGTCCTGAGCTTGAAAATGTCTGCAAAGCTCTTGAGGCTGTTGACTTAAGCAGTTCAGTGGATTTCATTCCTCCTAGTATGAAGGGTTGTAAAGAGTT TTGCGAAGCAGCAGTTCCTGAACTATTAGACATTTTGGCATCTGTCTGTAAGACTCACAGGTTGCCTTTAGCTCTAACATGGGCACCTTGTTTCCAACAA GGCAAAGGTGGATGTCGCCATTTTGACGAGAGCTATGCTCGTTACATCTCCACTGTGGATGCAGCCCGCTTTGTGGCCGACACAGAGTTATGGGCCTTCC TTGCTGCTTGTTCGGAGCAGTACCTTTTCCTCGGTCAAGGACTCGTCGGCAAAGCATTCACAATGAACAAACAATGCTTTGAACCAAATGTGAGTGCCTT GAGTAAGGCAGCTTATCCTCTCTCTCACCATGCCATGGTTGTTGGCCTGCAAGCCGCCATAGCAATCCCTCTCCAAAGTTCCACAACTGGTTTTGTCCTG GAATTGTTCCTGCCAAAAGATTGCCAAGATCCCGGTGAACAAAACAAGCTCCGAGACATGCTCCCCCTCACTGTACAGCAGGCTTCTCGTAGTTTACGCG TTGTAATGGAGCGAGAAGAACTCGAGGAATGGAGATCATTTCAGCCGGTGAAGAAAACCAGCCATGAAGAGCCATCATCATGGATCAGCCAGTTTATGGA GGTTCAGCCGAAAAGCAATGACACCTTTTCTTTCTCGAGGGAGTGCCTGAAGAAAGAACCTCAAGAAGAGTTCAAGGTTACATGGGAAAACAATCAAAGG GAGGTGAACCATAATACATTGGTTTCTACTGAGCATGCTTCATCTAGCATTAGAAGAATGAGTGAGAAGAGAAGGACCAAAACTGAGAAGACAGTTAGCT TGGATGTACTGAGGCAGTACTTTGCAGGGAGCCTTAAAGATGCTGCCAAGAGTCTTGGTGTGTGTCCAACTACACTGAAAAGGATATGCAGGCAATATGG AATCAACCGCTGGCCATCTCGAAAGATTAAGAAAGTTGGCCACACTCTGAAGAAACTCCAGCTCGTAATCGACTCAGTGCAAGGCGCAGATGGTGCCATT CAAATAGGGTCCTTCTACACAACTTTCCCTGACCTGACATCTCCAAACCATTCAGGAAACGTCCATCGTCAGCAGGTAGCACATGCTCAACCCGAACGCA ACACAAACACTTCGAAATCCGCATCCACATCCAGCAGCCAGAGCTCGGGTTGTAGTTCGTGTTATTCTGCTGGAGCTGAGCTCAAGAGAACGCGAAGCGA TGCAGAGTTACTCGTCTTGAATCACGATTATGAAGCACATCCTCTTCTTGCCAGATCCCAAAGCCATAGACTGCTGCTTGGTGGTGGTGATTCTGGATTT CACAAACCGGGTTGCAGGAAGTTAAGGGACGGGAGTGACTTTCGAGTAAAGGCTTCTTTCGGAGCAGACAAGGTAAGATTCAGCTTGCCATCGAGCTGGG GATTCAAGGAATTTAAGCAAGAGGTGATGAACAAGTTCAATGTAGGTGAATATGGTGCCTGCAGAGTTGATCTCAAGTACTTGGATGATGATCAAGAGTG GGTTCTTTTGACATGTGACGATGATCTTGAAGAATGCAAGGATGTGTATAGGTCAGAACAGCGGCACACAATCAAACTTTCACTTCATATGAAACCTGGT GCAGTTCCAGCAATGAACTGA
AA sequence Show only first row Show all	>Lus10014428 pacid=23143698 polypeptide=Lus10014428 locus=Lus10014428.g ID=Lus10014428.BGIv1.0 annot-version=v1.0 MDHDGGGAFTPNSTFENLISSSTMDLDPSMDQIFDERCWMGTPPDGFSFLSQPCPPTSLIIPELQHHGPNPHQDINFQGGGYENREVIPPSIKDRLEYAI RKLKEYTDPRDVLVQIWVPITKGGKHLLTTKDQPYFITPECMNLASYRNVSKEYHFGADLDSQVLVGLPGRVFLGKFPEWTPDVRYFKPEEYPRQSYAAQ YSISGSLAFPVFERGNWTCLGVVEVITTTRDIQYRPELENVCKALEAVDLSSSVDFIPPSMKGCKEFCEAAVPELLDILASVCKTHRLPLALTWAPCFQQ GKGGCRHFDESYARYISTVDAARFVADTELWAFLAACSEQYLFLGQGLVGKAFTMNKQCFEPNVSALSKAAYPLSHHAMVVGLQAAIAIPLQSSTTGFVL ELFLPKDCQDPGEQNKLRDMLPLTVQQASRSLRVVMEREELEEWRSFQPVKKTSHEEPSSWISQFMEVQPKSNDTFSFSRECLKKEPQEEFKVTWENNQR EVNHNTLVSTEHASSSIRRMSEKRRTKTEKTVSLDVLRQYFAGSLKDAAKSLGVCPTTLKRICRQYGINRWPSRKIKKVGHTLKKLQLVIDSVQGADGAI QIGSFYTTFPDLTSPNHSGNVHRQQVAHAQPERNTNTSKSASTSSSQSSGCSSCYSAGAELKRTRSDAELLVLNHDYEAHPLLARSQSHRLLLGGGDSGF HKPGCRKLRDGSDFRVKASFGADKVRFSLPSSWGFKEFKQEVMNKFNVGEYGACRVDLKYLDDDQEWVLLTCDDDLEECKDVYRSEQRHTIKLSLHMKPG AVPAMN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G35270		NLP2	Plant regulator RWP-RK family ...		Lus10014428 [exp]	0	1
AT4G35270		NLP2	Plant regulator RWP-RK family ...		Lus10023930 [exp]	1.7	0.8766
AT4G01370		ATMPK4	MAP kinase 4 (.1)		Lus10032295 [exp]	4.9	0.8689
AT4G16360			5'-AMP-activated protein kinas...		Lus10012343 [exp]	6.5	0.8641
AT5G13700		ATPAO1, APAO	polyamine oxidase 1 (.1)		Lus10042168 [exp]	11.6	0.8602
AT2G35940	HD	BLH1, EDA29	embryo sac development arrest ...		Lus10021270 [exp]	12.6	0.8585
AT4G26640	WRKY	ATWRKY20, WRKY2...	WRKY family transcription fact...		Lus10032580 [exp]	12.7	0.8363
AT1G20640		NLP4	Plant regulator RWP-RK family ...		Lus10012257 [exp]	12.8	0.8256
AT3G45070			P-loop containing nucleoside t...		Lus10003070 [exp]	14.0	0.8750
AT2G35940	HD	BLH1, EDA29	embryo sac development arrest ...		Lus10004201 [exp]	14.5	0.8670
AT4G16370		ATOPT3	oligopeptide transporter (.1)		Lus10038784 [exp]	16.5	0.8483

Compare expression of checked genes

Lus10014428 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.