Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G76350 127 / 2e-32 NLP5 Plant regulator RWP-RK family protein (.1) AT2G17150 127 / 2e-32 NLP1 Plant regulator RWP-RK family protein (.1.2) AT4G35270 126 / 5e-32 NLP2 Plant regulator RWP-RK family protein (.1) AT1G20640 126 / 5e-32 NLP4 Plant regulator RWP-RK family protein (.1.2) AT4G38340 110 / 2e-26 NLP3 Plant regulator RWP-RK family protein (.1) AT1G64530 108 / 1e-25 NLP6 Plant regulator RWP-RK family protein (.1) AT3G59580 103 / 3e-24 NLP9 Plant regulator RWP-RK family protein (.1.2) AT4G24020 103 / 3e-24 NLP7 NIN like protein 7 (.1) AT2G43500 90 / 1e-19 NLP8 Plant regulator RWP-RK family protein (.1.2) AT5G53040 54 / 3e-08 GRD, RKD4 RWP-RK domain-containing 4, GROUNDED, RWP-RK domain-containing protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023931 [exp] 578 / 0 AT2G17150 164 / 6e-45 Plant regulator RWP-RK family protein (.1.2) Lus10022621 [exp] 181 / 1e-52 AT2G17150 212 / 3e-60 Plant regulator RWP-RK family protein (.1.2) Lus10023049 [exp] 139 / 2e-36 AT4G24020 783 / 0.0 NIN like protein 7 (.1) Lus10030744 [exp] 134 / 7e-35 AT1G20640 427 / 1e-138 Plant regulator RWP-RK family protein (.1.2) Lus10013224 [exp] 127 / 2e-32 AT1G20640 600 / 0.0 Plant regulator RWP-RK family protein (.1.2) Lus10023930 [exp] 127 / 4e-32 AT4G35270 669 / 0.0 Plant regulator RWP-RK family protein (.1) Lus10014428 [exp] 127 / 4e-32 AT4G35270 659 / 0.0 Plant regulator RWP-RK family protein (.1) Lus10012257 [exp] 120 / 5e-30 AT1G20640 785 / 0.0 Plant regulator RWP-RK family protein (.1.2) Lus10016018 [exp] 120 / 8e-30 AT1G76350 775 / 0.0 Plant regulator RWP-RK family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G293300 [exp] 135 / 1e-35 AT4G35270 301 / 7e-92 Plant regulator RWP-RK family protein (.1) Potri.009G166932 [exp] 134 / 1e-34 AT4G35270 874 / 0.0 Plant regulator RWP-RK family protein (.1) Potri.002G009700 [exp] 134 / 1e-34 AT1G20640 824 / 0.0 Plant regulator RWP-RK family protein (.1.2) Potri.005G251700 [exp] 132 / 3e-34 AT4G35270 739 / 0.0 Plant regulator RWP-RK family protein (.1) Potri.004G205500 [exp] 129 / 5e-33 AT4G35270 829 / 0.0 Plant regulator RWP-RK family protein (.1) Potri.009G087500 [exp] 127 / 7e-33 AT4G35270 301 / 5e-92 Plant regulator RWP-RK family protein (.1) Potri.009G166400 [exp] 127 / 2e-32 AT4G35270 730 / 0.0 Plant regulator RWP-RK family protein (.1) Potri.016G042900 [exp] 124 / 4e-31 AT4G35270 572 / 0.0 Plant regulator RWP-RK family protein (.1) Potri.009G166666 [exp] 123 / 9e-31 AT4G35270 702 / 0.0 Plant regulator RWP-RK family protein (.1) Potri.001G087900 [exp] 110 / 2e-26 AT4G24020 991 / 0.0 NIN like protein 7 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF02042 [flax] [poplar] RWP-RK RWP-RK domain CL0072 [flax] [poplar] Ubiquitin PF00564 [flax] [poplar] PB1 PB1 domain
Representative CDS sequence Show only first row Show all	>Lus10014429 pacid=23143700 polypeptide=Lus10014429 locus=Lus10014429.g ID=Lus10014429.BGIv1.0 annot-version=v1.0 ATGGACGCAGATTCCTTCACACCATTTCCCGATTTCAATCAATTCGCATCTTCCTCACCAGATTCCATCAACTGGGATTTCGTCCACGAATCCTTGCTGT ATCAGGACTACTCCTGGTTCGACGAAATCGACTCTTGTTTCGACTTAATCCCTCAACCGGACCTTCATCTTCTTCCAGTTCATACGGTTCAAGAAGAAGC AATCAAACCCACTTCCGAAACGCCAAATTCTGGGAAGGAAGAGACTAATTTGAATTTCTCGTGGGATTGCGTTCCGAAGGAAGAACTCGGGGAAGAGGGT TTCAAGGTCTTGACCCACTGGGAAGATCATGAACCACCAGAGATGGAATTCGAATCGCAGAAAGGAATTCTAATTGGATGGAGTACTACTCAGCAATCCA AGTCCAGGAAGAAGAAGAGGGCAGGGAAGATGGAGCAGAAGATCAGCTTGCAAATGTTGAGAGGATACTTCGCTGGTAGCCTTAAAGATGCTGCTAAAGA AATCGGAGTTTGTGCAACGACGTTGAAAAGGATATGCAGGCAGCATGGGATAAAGCGTTGGCCATCAAGGAAGATCAAGAAAGTGGATCACTCCTTGAAG AAGCTTCAACGGGTGATCGACTCTGTTCATGAAGGAGCTCAAATTGGTTCCTTTTACTCAGATTTTCCTCAGTTGAACACCACTACTAGTTCCGAGGAAA CGTCGAAAGCTGAGGTTGATGATCGTACCATCTTTCGAGTGAAGGCGCGACTGGGGGACGAAAATGTGAGGTTGGTGATGAACCCAAGCTGGGGAGTGAG GGAGCTGAAGCAGGAGATTGGGAAGAGGTTTGGAGTGCAGGATGCTGTGGAGTTAGGGTTTGTAGGGTTCAGATACATGGATGAAGATAGCGAATGGGTT CATTTGAGTTGTGATGATGATCTTCAGGATTGTAAAGAGATGCACAGGTTCTCTGACAGGAATGCTATCAGGATATCCCTTCACCATACCTAA
AA sequence Show only first row Show all	>Lus10014429 pacid=23143700 polypeptide=Lus10014429 locus=Lus10014429.g ID=Lus10014429.BGIv1.0 annot-version=v1.0 MDADSFTPFPDFNQFASSSPDSINWDFVHESLLYQDYSWFDEIDSCFDLIPQPDLHLLPVHTVQEEAIKPTSETPNSGKEETNLNFSWDCVPKEELGEEG FKVLTHWEDHEPPEMEFESQKGILIGWSTTQQSKSRKKKRAGKMEQKISLQMLRGYFAGSLKDAAKEIGVCATTLKRICRQHGIKRWPSRKIKKVDHSLK KLQRVIDSVHEGAQIGSFYSDFPQLNTTTSSEETSKAEVDDRTIFRVKARLGDENVRLVMNPSWGVRELKQEIGKRFGVQDAVELGFVGFRYMDEDSEWV HLSCDDDLQDCKEMHRFSDRNAIRISLHHT

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G20640		NLP4	Plant regulator RWP-RK family ...		Lus10014429 [exp]	0	1
AT4G27290			S-locus lectin protein kinase ...		Lus10016871 [exp]	2.6	0.9573
AT5G50760			SAUR-like auxin-responsive pro...		Lus10003140 [exp]	2.8	0.9506
AT2G17150		NLP1	Plant regulator RWP-RK family ...		Lus10023931 [exp]	3.7	0.9363
					Lus10008301 [exp]	6.7	0.9488
AT2G19130			S-locus lectin protein kinase ...		Lus10042266 [exp]	7.5	0.9452
AT5G58630			unknown protein		Lus10040661 [exp]	9.2	0.9303
AT1G72890			Disease resistance protein (TI...		Lus10006929 [exp]	10.0	0.9433
AT2G29420		GST25, ATGSTU7	GLUTATHIONE S-TRANSFERASE 25, ...		Lus10016467 [exp]	10.2	0.9340
AT4G12300		CYP706A4	"cytochrome P450, family 706, ...		Lus10032026 [exp]	11.0	0.9283
AT5G49960			unknown protein		Lus10013455 [exp]	11.2	0.9316

Compare expression of checked genes

Lus10014429 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.