Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G38280 102 / 2e-26 unknown protein AT2G45250 102 / 3e-26 Integral membrane protein hemolysin-III homolog (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023933 [exp] 484 / 1e-174 AT2G45250 106 / 4e-28 Integral membrane protein hemolysin-III homolog (.1.2) Lus10022622 [exp] 142 / 7e-42 AT4G38280 110 / 2e-31 unknown protein Lus10003319 [exp] 132 / 2e-37 AT2G45250 85 / 1e-20 Integral membrane protein hemolysin-III homolog (.1.2) Lus10022623 [exp] 68 / 3e-14 ND /
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G205200 [exp] 197 / 8e-62 AT4G38280 100 / 6e-26 unknown protein Potri.009G166100 [exp] 196 / 2e-61 AT4G38280 106 / 4e-28 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10014432 pacid=23143735 polypeptide=Lus10014432 locus=Lus10014432.g ID=Lus10014432.BGIv1.0 annot-version=v1.0 ATGGTTCAGAAGATGACAAGCTCCGAAATTGGCGAGTGTATGATGGATAATACTGAGCCAAACTCGTCTGGTTATGATAAGCAGTTTCCAGTTGCTGTTA AGAAAGCAGCTTTAAGAGATGTGCAGAATCAGAACAAGTCTCACAACAACTCCATTGCCGCCAGTTCTCCATTGACTAAGAAAGGTGGACAAAGTATGGA CACCGTCAAGGTTTCTTGTACCAAGAGAACCTCGCCGGAGAGTCCAGCAGGCCTTCCGCGTTGTAACCAATCCCCAAACAGCAATGCTGCCAATGCTCAA CTTGTCTATGTGCGTAGGAAACCTGAAGCTGAAATAGCAAAGAATAGTAGCGGCAGTGATGGAAGGAGCTTGAACTCTAACTCCCCAATTCGACACCGGT TTGGTCACTCTGCGGAGAGCACCACCAACCAACTTAAATCACCTGCGAATGAGCCACAGTTCTATCGCCTCTCAGCATTCGCACCACCTATTACCACAGG TTCCACAACAAGTACATCGGGAAAACCTTCAGTTTCAGCGCCGTCTGGCTATCATCGTTTTACTTGTGTAGTACCTGTGTCTGATAATGGGAAGGGGCTG AAACGTATGCATTGGGAGGAACGATATCACCAGTTACAAGTTCAATTAAAGAAACTGGACGAGTCAAATCAAGAGGATTACATACAGATGCTTCAATCAC TTTCTTCTGTTGAGCTCAGCAGACATGCAGTGGAGTTGGAAAAGCGATCGATTCAGCTTTCATTCGAAGAAGCGAAAGAGATACAACGGGTGGCGTTCCT GAACGTACTGGGGAGGAATCTGAAACCACCACCCTCAATTCAACAGCTTCAGTCGTCGAAATGA
AA sequence Show only first row Show all	>Lus10014432 pacid=23143735 polypeptide=Lus10014432 locus=Lus10014432.g ID=Lus10014432.BGIv1.0 annot-version=v1.0 MVQKMTSSEIGECMMDNTEPNSSGYDKQFPVAVKKAALRDVQNQNKSHNNSIAASSPLTKKGGQSMDTVKVSCTKRTSPESPAGLPRCNQSPNSNAANAQ LVYVRRKPEAEIAKNSSGSDGRSLNSNSPIRHRFGHSAESTTNQLKSPANEPQFYRLSAFAPPITTGSTTSTSGKPSVSAPSGYHRFTCVVPVSDNGKGL KRMHWEERYHQLQVQLKKLDESNQEDYIQMLQSLSSVELSRHAVELEKRSIQLSFEEAKEIQRVAFLNVLGRNLKPPPSIQQLQSSK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G45250			Integral membrane protein hemo...		Lus10014432 [exp]	0	1
AT5G55160		ATSUMO2, SUMO2,...	small ubiquitin-like modifier ...		Lus10032560 [exp]	6.9	0.7403
					Lus10003566 [exp]	27.6	0.7049
AT5G52200		AtI-2	inhibitor-2, phosphoprotein ph...		Lus10027444 [exp]	32.7	0.7039
AT1G07950		MED22B	Surfeit locus protein 5 subuni...		Lus10023466 [exp]	44.9	0.7007
AT4G13520		SMAP1	small acidic protein 1 (.1)		Lus10004400 [exp]	49.3	0.6957
AT4G11560			bromo-adjacent homology (BAH) ...		Lus10008492 [exp]	57.2	0.6998
					Lus10004903 [exp]	58.4	0.6421
AT5G04280		AtRZ-1c	AtRZ-1c, RNA-binding (RRM/RBD/...		Lus10037950 [exp]	68.8	0.6772
AT5G19490	CCAAT		Histone superfamily protein (....		Lus10026780 [exp]	74.9	0.6893
AT4G25500		ATRSP40, AT-SRP...	ARABIDOPSIS THALIANA ARGININE/...		Lus10038883 [exp]	78.3	0.6399

Compare expression of checked genes

Lus10014432 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.