Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G17200 322 / 8e-104 DSK2 ubiquitin family protein (.1) AT2G17190 190 / 1e-53 ubiquitin family protein (.1) AT5G42220 66 / 3e-11 Ubiquitin-like superfamily protein (.1) AT5G25270 54 / 2e-07 Ubiquitin-like superfamily protein (.1) AT5G11080 52 / 5e-07 Ubiquitin-like superfamily protein (.1.2) AT1G23410 48 / 2e-06 Ribosomal protein S27a / Ubiquitin family protein (.1) AT3G52590 47 / 3e-06 HAP4, ERD16, UBQ1, EMB2167 HAPLESS 4, EARLY-RESPONSIVE TO DEHYDRATION 16, EMBRYO DEFECTIVE 2167, ubiquitin extension protein 1 (.1) AT2G36170 47 / 3e-06 Ubiquitin supergroup;Ribosomal protein L40e (.1) AT3G62250 47 / 3e-06 UBQ5 ubiquitin 5 (.1) AT2G47110 47 / 4e-06 UBQ6 ubiquitin 6 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023934 [exp] 615 / 0 AT2G17200 565 / 0.0 ubiquitin family protein (.1) Lus10034563 [exp] 62 / 8e-10 AT5G42220 444 / 3e-148 Ubiquitin-like superfamily protein (.1) Lus10040001 [exp] 58 / 2e-08 AT5G25270 328 / 3e-102 Ubiquitin-like superfamily protein (.1) Lus10008806 [exp] 57 / 2e-08 AT5G23740 282 / 1e-89 ribosomal protein S11-beta (.1) Lus10021830 [exp] 51 / 2e-06 AT5G42220 595 / 0.0 Ubiquitin-like superfamily protein (.1) Lus10008873 [exp] 47 / 4e-06 AT3G52590 261 / 5e-92 HAPLESS 4, EARLY-RESPONSIVE TO DEHYDRATION 16, EMBRYO DEFECTIVE 2167, ubiquitin extension protein 1 (.1) Lus10030595 [exp] 47 / 5e-06 AT2G47110 257 / 3e-89 ubiquitin 6 (.1.2) Lus10030894 [exp] 47 / 5e-06 AT2G47110 257 / 3e-89 ubiquitin 6 (.1.2) Lus10018367 [exp] 48 / 7e-06 AT4G05320 452 / 4e-164 polyubiquitin 10 (.1.2.3.4.5.6)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G166000 [exp] 358 / 2e-117 AT2G17200 547 / 0.0 ubiquitin family protein (.1) Potri.004G205100 [exp] 241 / 1e-72 AT2G17200 425 / 3e-143 ubiquitin family protein (.1) Potri.005G100200 [exp] 212 / 8e-62 AT2G17200 478 / 2e-164 ubiquitin family protein (.1) Potri.005G247900 [exp] 64 / 3e-10 AT5G42220 471 / 6e-152 Ubiquitin-like superfamily protein (.1) Potri.006G059700 [exp] 60 / 3e-09 AT5G25270 343 / 3e-108 Ubiquitin-like superfamily protein (.1) Potri.018G115500 [exp] 59 / 7e-09 AT5G25270 352 / 2e-111 Ubiquitin-like superfamily protein (.1) Potri.002G013500 [exp] 56 / 5e-08 AT5G42220 602 / 0.0 Ubiquitin-like superfamily protein (.1) Potri.004G194000 [exp] 50 / 3e-07 AT3G52590 210 / 3e-71 HAPLESS 4, EARLY-RESPONSIVE TO DEHYDRATION 16, EMBRYO DEFECTIVE 2167, ubiquitin extension protein 1 (.1) Potri.016G077200 [exp] 47 / 3e-06 AT3G52590 260 / 2e-91 HAPLESS 4, EARLY-RESPONSIVE TO DEHYDRATION 16, EMBRYO DEFECTIVE 2167, ubiquitin extension protein 1 (.1) Potri.012G024300 [exp] 47 / 3e-06 AT3G52590 260 / 2e-91 HAPLESS 4, EARLY-RESPONSIVE TO DEHYDRATION 16, EMBRYO DEFECTIVE 2167, ubiquitin extension protein 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0072 [flax] [poplar] Ubiquitin PF00240 [flax] [poplar] ubiquitin Ubiquitin family CL0214 [flax] [poplar] UBA PF00627 [flax] [poplar] UBA UBA/TS-N domain
Representative CDS sequence Show only first row Show all	>Lus10014433 pacid=23143706 polypeptide=Lus10014433 locus=Lus10014433.g ID=Lus10014433.BGIv1.0 annot-version=v1.0 ATGGGAGGTGAAGGTGGTGATTCGACCAACTCTCAATTGGCCTCCTCAGCCGGCGATGCCGATCAAGGGCAATCGGAGGATTTGGTGGCGGTCAATGTCC GGTGCTCGAACGGGACCAAATTCACGGTCAGGACGGCGCTTGAATCCACGGTGCAGGCTTTCAAAGCACTTTTGGCTCAGAATTGCGATGTCCCAGCTGA GCAGCAGCGCCTGATTTACAAGGGTCGTATCCTCAAGGACGATCAAACCCTCGTGAGCTATGGTTTGCAGGCTGATCACACAATCCATATGGTTCGTGGT TTTGCTCCAGCTTCATCAACCCCTGGATCTGCTCCTTCACCTGCACCAGCAGCTAATCCTGCAACCCAGAATGCTGCCCCTAGCGTTACGAGGGGTGTTG GCGCCAATGAAGGTGGGCCCTTTGGTGGTGCTGGTATTGGATCACCTCTGTTTCCTGGACTTGGATTCAATGCACTTGGTGGTGGCACTGGCGGGTCAGC TAATTTGTTTGGAACTGGGCTTCCGGAGTTTGAACAAGTACAGCAGCAACTGACACAGAACCCAAACATGATGAGGGACATAATGAATATGCCTGCTATT CAGAGCATGATGAACAATCCCGAGTTGATGCGGAGCTTAATTATGAGCAATCCTCAAATGCGTGACATCATTGACAGGAATCCTGAGCTTGGGCATGTGC TCAATGACCCTAGCGTTCTCCGCCAGACACTAGAAGCTGCAAGGAACCCAGAGCTCATGCGTGAGATGATGAGAAACACCGATCGTGCTATGAGCAATAT TGAAGCTTCCCCTGAGGGATTTAACATGCTCAGGCGCATGTATGAAAATGTCCAGGAACCATTTCTTAATGCAACTACAATGGGCACTAATACCGGAAAC AATCCAAATCCCAACCCTTTTGCTGCACTTCTTGCAAACCAGGGTGGGACACAAACCAGGGATGCATCAAACAACTCTTCAACCACTGGTACAGAAACAA CCCCTGGGTTAACTGTTCCAAATTCAAACCCGCTGCCTAATCCATGGAGCAATACTACAGGCGGAACTCAGACAAACCCACCAACAAGGCTAATTCCTGC TGCTGGAGATCCCAGGGCAACTGGTCTTGCTGGCTTGGGAGGGCTCGGTCTCCCAGGAATGGAACAATTGATGGGCGGTGGTATGCCAGATGCTGCTAAT TTGAATCAGTTGATGCAGAATCCAGCTATGTCACAGATGATGCAAAATTTGCTTTCCAACCCCGAGTACATGAACCAGATGCTAACCCTGCAGCAGTCTC TTCTTTCTCAGCTCAACCGGCAGCAGACAACCACTGATTCAGCACAGACTGGTACCACTCCAGGAACTCCCAATACTGCTAATTTGGAGTTGCTAATGAA CATGTTTGGTGGTCTTGGTGCTGGCGGCTTATCTACTCCGAACCAACCAGACGTGCCACCAGAAGAGCTGTATGCGACTCAACTTTCACAGCTCCAAGAG ATGGGTTTCTTCGATACACAGGAGAATATTCGAGCATTGCGTGCTACTGCTGGGAATGTCCATGCTGCAGTGGAGCGACTACTAGGAAATCTTGGACAAT AG
AA sequence Show only first row Show all	>Lus10014433 pacid=23143706 polypeptide=Lus10014433 locus=Lus10014433.g ID=Lus10014433.BGIv1.0 annot-version=v1.0 MGGEGGDSTNSQLASSAGDADQGQSEDLVAVNVRCSNGTKFTVRTALESTVQAFKALLAQNCDVPAEQQRLIYKGRILKDDQTLVSYGLQADHTIHMVRG FAPASSTPGSAPSPAPAANPATQNAAPSVTRGVGANEGGPFGGAGIGSPLFPGLGFNALGGGTGGSANLFGTGLPEFEQVQQQLTQNPNMMRDIMNMPAI QSMMNNPELMRSLIMSNPQMRDIIDRNPELGHVLNDPSVLRQTLEAARNPELMREMMRNTDRAMSNIEASPEGFNMLRRMYENVQEPFLNATTMGTNTGN NPNPNPFAALLANQGGTQTRDASNNSSTTGTETTPGLTVPNSNPLPNPWSNTTGGTQTNPPTRLIPAAGDPRATGLAGLGGLGLPGMEQLMGGGMPDAAN LNQLMQNPAMSQMMQNLLSNPEYMNQMLTLQQSLLSQLNRQQTTTDSAQTGTTPGTPNTANLELLMNMFGGLGAGGLSTPNQPDVPPEELYATQLSQLQE MGFFDTQENIRALRATAGNVHAAVERLLGNLGQ

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G17200		DSK2	ubiquitin family protein (.1)		Lus10014433 [exp]	0	1
AT5G40650		SDH2-2	succinate dehydrogenase 2-2 (....		Lus10014573 [exp]	1.4	0.8439
AT5G03340			ATPase, AAA-type, CDC48 protei...		Lus10021441 [exp]	1.7	0.8707
AT3G46290		HERK1	hercules receptor kinase 1 (.1...		Lus10028140 [exp]	9.9	0.8001
AT3G11760			unknown protein		Lus10016183 [exp]	13.8	0.7414
AT5G22070			Core-2/I-branching beta-1,6-N-...		Lus10004106 [exp]	17.5	0.7799
AT5G42660			Protein of unknown function (D...		Lus10032311 [exp]	20.8	0.8016
AT2G17030			F-box family protein with a do...		Lus10023984 [exp]	22.3	0.7835
AT4G35300		TMT2	tonoplast monosaccharide trans...		Lus10001385 [exp]	22.4	0.8031
AT2G17970			2-oxoglutarate (2OG) and Fe(II...		Lus10028462 [exp]	23.7	0.7962
AT5G03340			ATPase, AAA-type, CDC48 protei...		Lus10016123 [exp]	24.2	0.7886

Compare expression of checked genes

Lus10014433 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.