Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G38370 322 / 7e-113 Phosphoglycerate mutase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023935 [exp] 431 / 3e-155 AT4G38370 305 / 2e-105 Phosphoglycerate mutase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G165400 [exp] 362 / 1e-128 AT4G38370 330 / 6e-116 Phosphoglycerate mutase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0071 [flax] [poplar] His_phosphatase PF00300 [flax] [poplar] His_Phos_1 Histidine phosphatase superfamily (branch 1)
Representative CDS sequence Show only first row Show all	>Lus10014434 pacid=23143741 polypeptide=Lus10014434 locus=Lus10014434.g ID=Lus10014434.BGIv1.0 annot-version=v1.0 ATGGATGCTGCATTGTTGAAGAACAAATACTGGGTGCTGAGACATGGGAAGAGTATTCCAAATGAGAAAGGAATCATCGTGTCATCTATGGACAATGGCA TTCGTCCAGAATACCAACTGGCAGAGGAAGGCATTGGCCAGGCACAGTTGGCTGGAGAATTGTTCCTTCAGGAACTGAAGGAAAACAGCATTCCACTTGA TAGAGTGAGAATCTGCTACTCTCCATTTGCAAGAACAAGCCACACTGCTAAAGTTGCTGTCTCGGCTTTAGGCATTCCGTTTGAAGGCCCTCAATGCAAG GTGATTGAAGATCTCAGGGAACGCTACTTCGGTCCTTCTTTCGAGCTGATGTCGCACGATAAGTATGCGGAGATATGGGCGCTTGATGAGAAAGACCCAT TCATGCAACCAGAAGGTGGAGAAAGTGTGAATGATGTTGCTACAAGACTCTCTAGTGTGATAGCAAGGATCGAATCCGAATTCAAGAGATCAGCAGTGTT GTTAGTTAGCCATGGGGATCCCTTGCAAATATTGCAGACGATACTCCACGCAGCCAAACAAGTGACGGAATCAACTAATGGTGATGGTGACATTTCGTCG AGGATGCAGGCAGTTAGAGTTCCTTCTGTATTGTCCCAGCACCGGAAGTTTGCCCTACAGACCGGGGAACTGCGAGGAGTCGTATAA
AA sequence Show only first row Show all	>Lus10014434 pacid=23143741 polypeptide=Lus10014434 locus=Lus10014434.g ID=Lus10014434.BGIv1.0 annot-version=v1.0 MDAALLKNKYWVLRHGKSIPNEKGIIVSSMDNGIRPEYQLAEEGIGQAQLAGELFLQELKENSIPLDRVRICYSPFARTSHTAKVAVSALGIPFEGPQCK VIEDLRERYFGPSFELMSHDKYAEIWALDEKDPFMQPEGGESVNDVATRLSSVIARIESEFKRSAVLLVSHGDPLQILQTILHAAKQVTESTNGDGDISS RMQAVRVPSVLSQHRKFALQTGELRGVV

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G38370			Phosphoglycerate mutase family...		Lus10014434 [exp]	0	1
AT5G16950			unknown protein		Lus10026852 [exp]	3.9	0.7789
AT2G19730			Ribosomal L28e protein family ...		Lus10037609 [exp]	6.6	0.8008
AT2G19385			zinc ion binding (.1)		Lus10027626 [exp]	6.9	0.8005
AT1G14620		XTR2, EXGT-A2, ...	decoy (.1.2)		Lus10012875 [exp]	8.8	0.7971
AT1G71150			unknown protein		Lus10034613 [exp]	9.2	0.6792
AT1G74270			Ribosomal protein L35Ae family...		Lus10035539 [exp]	14.7	0.7619
AT1G05730			Eukaryotic protein of unknown ...		Lus10025588 [exp]	15.5	0.7463
AT1G50910			unknown protein		Lus10011153 [exp]	15.7	0.7636
AT1G09590			Translation protein SH3-like f...		Lus10021079 [exp]	17.9	0.7835
AT2G34480			Ribosomal protein L18ae/LX fam...		Lus10019881 [exp]	20.0	0.7723

Compare expression of checked genes

Lus10014434 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.