Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G17980 989 / 0 ATSLY1 Sec1/munc18-like (SM) proteins superfamily (.1) AT4G31740 234 / 2e-74 Sec1/munc18-like (SM) proteins superfamily (.1) AT4G36100 151 / 5e-42 Sec1/munc18-like (SM) proteins superfamily (.1) AT1G12360 94 / 7e-20 KEU keule, Sec1/munc18-like (SM) proteins superfamily (.1) AT1G02010 93 / 2e-19 SEC1A secretory 1A (.1.2) AT4G12120 90 / 1e-18 ATSEC1B, SEC1B Sec1/munc18-like (SM) proteins superfamily (.1) AT1G77140 89 / 2e-18 ATVPS45, VPS45 vacuolar protein sorting 45 (.1) AT3G54860 45 / 0.0001 ATVPS33 VACUOLAR PROTEIN SORTING 33, Sec1/munc18-like (SM) proteins superfamily (.1), Sec1/munc18-like (SM) proteins superfamily (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023936 [exp] 1224 / 0 AT2G17980 994 / 0.0 Sec1/munc18-like (SM) proteins superfamily (.1) Lus10024558 [exp] 90 / 2e-18 AT1G12360 1034 / 0.0 keule, Sec1/munc18-like (SM) proteins superfamily (.1) Lus10028622 [exp] 86 / 3e-17 AT1G77140 977 / 0.0 vacuolar protein sorting 45 (.1) Lus10032196 [exp] 86 / 3e-17 AT1G12360 1031 / 0.0 keule, Sec1/munc18-like (SM) proteins superfamily (.1) Lus10018921 [exp] 84 / 7e-17 AT1G77140 974 / 0.0 vacuolar protein sorting 45 (.1) Lus10015870 [exp] 83 / 3e-16 AT1G02010 909 / 0.0 secretory 1A (.1.2) Lus10009293 [exp] 76 / 3e-14 AT1G02010 868 / 0.0 secretory 1A (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G204400 [exp] 1094 / 0 AT2G17980 1013 / 0.0 Sec1/munc18-like (SM) proteins superfamily (.1) Potri.009G165300 [exp] 1065 / 0 AT2G17980 1003 / 0.0 Sec1/munc18-like (SM) proteins superfamily (.1) Potri.001G116900 [exp] 98 / 4e-21 AT1G12360 1113 / 0.0 keule, Sec1/munc18-like (SM) proteins superfamily (.1) Potri.003G115800 [exp] 93 / 2e-19 AT1G12360 1083 / 0.0 keule, Sec1/munc18-like (SM) proteins superfamily (.1) Potri.014G069300 [exp] 92 / 2e-19 AT1G02010 945 / 0.0 secretory 1A (.1.2) Potri.005G188000 [exp] 86 / 1e-17 AT1G77140 999 / 0.0 vacuolar protein sorting 45 (.1) Potri.002G071600 [exp] 83 / 2e-16 AT1G77140 996 / 0.0 vacuolar protein sorting 45 (.1) Potri.010G226600 [exp] 47 / 3e-05 AT3G54860 929 / 0.0 VACUOLAR PROTEIN SORTING 33, Sec1/munc18-like (SM) proteins superfamily (.1), Sec1/munc18-like (SM) proteins superfamily (.2) Potri.008G035600 [exp] 45 / 0.0001 AT3G54860 968 / 0.0 VACUOLAR PROTEIN SORTING 33, Sec1/munc18-like (SM) proteins superfamily (.1), Sec1/munc18-like (SM) proteins superfamily (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00995 [flax] [poplar] Sec1 Sec1 family
Representative CDS sequence Show only first row Show all	>Lus10014435 pacid=23143745 polypeptide=Lus10014435 locus=Lus10014435.g ID=Lus10014435.BGIv1.0 annot-version=v1.0 ATGTTGAATTTGAACCAACCTGTGAACGCAACGGGTACCGCAAACGAAGAGGTATACAAGATCTTGATCTACGATAAGTTCTGCCAGAACATTCTCTCCC CATTGATCCACGTCAAGGATCTGAGGAAGCACGGCGTGACACTCTACTTCCTGATCGACAAAGATCGAAAGCCAGTCCACGATGTTCCTGCTGTGTACTT TATCCAACCAAGTCAACCAAACATCCAACGCATCATCGCCGATGCCTCCCGTGGACTGTACGACAGCTTACATTTGAACTTATCGTCATCGATAGCGAGG CCTTTGCTTGAGGATCTTGCTTCGGGGACTCTAGGCTCAGAGTCCATCCAGAGGGTTGCCAAGGTTCATGATCAGTACTTGGAGTTTGTGACGTTGGAAG ATGGATTGTTCTCGTTGGCACAGAAGGCTTGTTATGTACAGTTGAACGATCCTTCAGCTGGGGATAAGGAGATTGAGGAGATCATTGAGAGGATTGTTAG TGGAATTTTCTGTGTGTTAGCTACGTTGGCTGTTGTGCCGGTTATTAGGTGTCAACGCGGAGGACCTGCCGAGATGGTGGCTTCAGCGTTGGATCAGAAG CTGAGGGATCACTTGTTGGCAAAGAACAATTTGTTTACTGAAGGTGGAAGCTTTATGAGTTCTTTTCAGCGGCCAATTCTGTGCTTGTTCGATAGGAATT TCGAGCTTGCTGTCGGGATACAGCACGATTTCAGGTACTGTCCGCTTGTTCATGATGTGCTTGGGTTGAGGCTTAATAGGTTGAGTGTGCAAGGGGAAAA AGGTGGCATGAGGTCGTATGAGTTGGATAGTTCTGATCCATTCTGGCTTGCGAATGGATCGTTGGAGTTCCCTGAAGTTGCTGTCGAGATCGAAACCCAG TTGAATAAGTACAAGAAGGATGTCGATGAGGTGAATAGAAGGACCGGTGGAACAGATGGTCCTGAGTTTGAAGGAACGGACTTGATTGGGAACACTAAGC ATTTGATGAATGCTGTGAACTCTCTCCCGGAGTTGACCGAGCGAAAGCAAGTGATTGATAAACACACCAACATTGCAACTGTGTTATTGGGTGAGATCAA GGAGAGGTCGCTAGATTCATACGCCAAAAAGGAGAATGACATGATGATCAGAGGAGGAAACATTGATCGCAGCGAAATCATGTCTGTTCTTAAAGGCAAA GGAAGTAAAATGGACAAGCTGAGATTTGCAATCATCTACCTCATATCTTCAGAAACTATTAACCAACAAGAGGTGGAGCTAGTCGAAGCAGCTCTCAAGG AATCCGAGGTTGACACATGTGCATTCCAGTACGTCAAGAAAATCAAGTCCCTGAATGTCCAACTGGCAACTGCGAATTCGGCCAGTACAAGTAACATTGT AGATTGGGCTGAAAAGCTGTACGGACAGTCACTAAGCGCTGTCACTGCTGGTGTGAAGAACTTGCTATCGGGCGACAGGCAACTCGCTCTAACCAGGACG GTAGAAGCCTTAATGGAAGGGAAACCGAACCCTGAAATCGATTCCTACCTCCTGTTTGATCCTCGTGCACCCAAGTCAAGCTCTGGAGCAGGCCATATGA AAGGACCGTTCAAAGAAGCGATTGTGTTTATGGTAGGTGGAGGAAACTACGTCGAATATGGAGGCTTGCAGGAACTTGCACAACGTCAGCAGCCTGTGAA GCATATTATCTATGGCACGACAGAGATTCTAACTGGGGAGGAGTTTGTCGGTCAGCTTACTGTCTTGGGGCAAAAGATGGGTTTGGGCGGCTGA
AA sequence Show only first row Show all	>Lus10014435 pacid=23143745 polypeptide=Lus10014435 locus=Lus10014435.g ID=Lus10014435.BGIv1.0 annot-version=v1.0 MLNLNQPVNATGTANEEVYKILIYDKFCQNILSPLIHVKDLRKHGVTLYFLIDKDRKPVHDVPAVYFIQPSQPNIQRIIADASRGLYDSLHLNLSSSIAR PLLEDLASGTLGSESIQRVAKVHDQYLEFVTLEDGLFSLAQKACYVQLNDPSAGDKEIEEIIERIVSGIFCVLATLAVVPVIRCQRGGPAEMVASALDQK LRDHLLAKNNLFTEGGSFMSSFQRPILCLFDRNFELAVGIQHDFRYCPLVHDVLGLRLNRLSVQGEKGGMRSYELDSSDPFWLANGSLEFPEVAVEIETQ LNKYKKDVDEVNRRTGGTDGPEFEGTDLIGNTKHLMNAVNSLPELTERKQVIDKHTNIATVLLGEIKERSLDSYAKKENDMMIRGGNIDRSEIMSVLKGK GSKMDKLRFAIIYLISSETINQQEVELVEAALKESEVDTCAFQYVKKIKSLNVQLATANSASTSNIVDWAEKLYGQSLSAVTAGVKNLLSGDRQLALTRT VEALMEGKPNPEIDSYLLFDPRAPKSSSGAGHMKGPFKEAIVFMVGGGNYVEYGGLQELAQRQQPVKHIIYGTTEILTGEEFVGQLTVLGQKMGLGG

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G17980		ATSLY1	Sec1/munc18-like (SM) proteins...		Lus10014435 [exp]	0	1
AT2G17980		ATSLY1	Sec1/munc18-like (SM) proteins...		Lus10023936 [exp]	1.0	0.9694
AT4G13940		MEE58, EMB1395,...	MATERNAL EFFECT EMBRYO ARREST ...		Lus10022559 [exp]	1.7	0.9510
AT5G10840			Endomembrane protein 70 protei...		Lus10042415 [exp]	2.0	0.9520
AT5G57460			unknown protein		Lus10028963 [exp]	2.2	0.9458
AT1G67930			Golgi transport complex protei...		Lus10007330 [exp]	2.8	0.9509
AT5G52180			unknown protein		Lus10031574 [exp]	3.2	0.9282
AT3G13772		AtTMN7	transmembrane nine 7 (.1)		Lus10037643 [exp]	3.5	0.9395
AT4G01400			unknown protein		Lus10002677 [exp]	4.7	0.9276
AT3G16200			unknown protein		Lus10037579 [exp]	5.1	0.9246
AT1G67930			Golgi transport complex protei...		Lus10020754 [exp]	5.3	0.9378

Compare expression of checked genes

Lus10014435 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.