Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G35260 584 / 0 IDH-I, IDH1 isocitrate dehydrogenase I, isocitrate dehydrogenase 1 (.1) AT4G35650 566 / 0 IDH-III isocitrate dehydrogenase III (.1) AT2G17130 565 / 0 IDH-II, IDH2 isocitrate dehydrogenase II, isocitrate dehydrogenase subunit 2 (.1.2) AT5G03290 311 / 5e-104 IDH-V isocitrate dehydrogenase V (.1) AT3G09810 293 / 6e-97 IDH-VI isocitrate dehydrogenase VI (.1) AT1G32480 260 / 3e-86 IDH-IV isocitrate dehydrogenase IV (.1) AT1G80560 99 / 9e-23 ATIMD2 ARABIDOPSIS ISOPROPYLMALATE DEHYDROGENASE 2, isopropylmalate dehydrogenase 2 (.1) AT1G31180 97 / 3e-22 IPMDH1, ATIMD3 ISOPROPYLMALATE DEHYDROGENASE 1, ARABIDOPSIS ISOPROPYLMALATE DEHYDROGENASE 3, isopropylmalate dehydrogenase 3 (.1) AT5G14200 97 / 5e-22 ATIMD1 ARABIDOPSIS ISOPROPYLMALATE DEHYDROGENASE 1, isopropylmalate dehydrogenase 1 (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023937 [exp] 589 / 0 AT4G35260 549 / 0.0 isocitrate dehydrogenase I, isocitrate dehydrogenase 1 (.1) Lus10028374 [exp] 586 / 0 AT4G35260 659 / 0.0 isocitrate dehydrogenase I, isocitrate dehydrogenase 1 (.1) Lus10041824 [exp] 584 / 0 AT4G35260 656 / 0.0 isocitrate dehydrogenase I, isocitrate dehydrogenase 1 (.1) Lus10013806 [exp] 306 / 3e-102 AT5G03290 642 / 0.0 isocitrate dehydrogenase V (.1) Lus10002221 [exp] 306 / 6e-102 AT5G03290 648 / 0.0 isocitrate dehydrogenase V (.1) Lus10023192 [exp] 305 / 1e-101 AT5G03290 649 / 0.0 isocitrate dehydrogenase V (.1) Lus10026519 [exp] 301 / 2e-100 AT5G03290 642 / 0.0 isocitrate dehydrogenase V (.1) Lus10030344 [exp] 100 / 5e-23 AT1G80560 655 / 0.0 ARABIDOPSIS ISOPROPYLMALATE DEHYDROGENASE 2, isopropylmalate dehydrogenase 2 (.1) Lus10041077 [exp] 94 / 5e-21 AT1G80560 658 / 0.0 ARABIDOPSIS ISOPROPYLMALATE DEHYDROGENASE 2, isopropylmalate dehydrogenase 2 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G064000 [exp] 587 / 0 AT4G35260 595 / 0.0 isocitrate dehydrogenase I, isocitrate dehydrogenase 1 (.1) Potri.004G204300 [exp] 583 / 0 AT4G35260 611 / 0.0 isocitrate dehydrogenase I, isocitrate dehydrogenase 1 (.1) Potri.005G099600 [exp] 582 / 0 AT4G35260 613 / 0.0 isocitrate dehydrogenase I, isocitrate dehydrogenase 1 (.1) Potri.009G165200 [exp] 580 / 0 AT4G35260 621 / 0.0 isocitrate dehydrogenase I, isocitrate dehydrogenase 1 (.1) Potri.006G126700 [exp] 310 / 1e-103 AT5G03290 627 / 0.0 isocitrate dehydrogenase V (.1) Potri.016G091200 [exp] 307 / 2e-102 AT5G03290 642 / 0.0 isocitrate dehydrogenase V (.1) Potri.001G185600 [exp] 97 / 3e-22 AT1G80560 639 / 0.0 ARABIDOPSIS ISOPROPYLMALATE DEHYDROGENASE 2, isopropylmalate dehydrogenase 2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0270 [flax] [poplar] Iso_DH PF00180 [flax] [poplar] Iso_dh Isocitrate/isopropylmalate dehydrogenase
Representative CDS sequence Show only first row Show all	>Lus10014436 pacid=23143694 polypeptide=Lus10014436 locus=Lus10014436.g ID=Lus10014436.BGIv1.0 annot-version=v1.0 ATGTCTCGTCGATCTTTTCCCGATCTCCTGAGACGCCTCAAGGCGGCGTCATCTTCTTCTCCCCACTCGCCCACGCGCCGCTCAATCACTTACATGCCTC GACCCGGAGATGGCACCCCACGTGCGGTGACGCTGATCCCAGGGGACGGGATCGGGCCGCTGGTCACGAACGCGGTTGAGCAGGTGATGGAGGCGATGCA CGCGCCGGTTTTCTTCGAGAAGTACGAGGTTCGTGGGGACATGAAGCAGTTCCCTCCCGAGGTCCTGGAATCCATCAAGAGAAACAAGGTGTGCATAAAG GGAGGGCTGATGACGCCGATGGGAGGAGGGGTGAGCTCGCTGAACCTGCAGCTGAGGAAAGAGCTGGACCTATACGCGTCGCTGGTGAACTGCAGGAACA TGCGAGGGCTGCCGATTCGACACGAGAAGGTGGACATTGTGGTGGGGGGGGAGAACACCGAAGGAGAGTACGCTGGCCTTGAGCATGAGGTGGTTCCTGG CGTTGTTGAGAGTCTTAAGGTGATTACGAAGCACTGCTCGGATAGGATCGCGGAGTACGCGTTCGAGTATGCGTACTTGAACAACAGGAAGAAGGTGACT GCGGTCCACAAGGCGAACATCATGAAGCTTGCCGACGGCCTGTTTTTGGAGTCGTGCCGTGAGGTCGCCCAGAAGTATCCTGCCATCGCCTACAACGAGA TCATCGTCGACAATTGCTGCATGCAGCTCGTCTCGAGGCCCGAGCAGTTTGACGTCATGGTCACCCCAAATCTGTACGGAAACCTAGTAGCAAACACCGC AGCCGGCATCGCTGGAGGCACAGGCTTCATGCCCGGAGGAAATGTGGGAGCGGACCACGCAGTATTCGAGCAAGGAGCCTCTGCCGGAAACACGGGGAAT GATAAAATAGTGTCGCAAAAGATGGCGAACCCGGTGGCTCTCCTCCTCTCTTCGGCTATGATGTTGAGGCATCTCCAGTTCCCTTCTTTTGCCGACAGGC TCGAAACGGCGGTTGGTAAAATGATTTTGGAAGGGAAATATCTTACCAAGGACCTCGGCGGCGACAGCTCGACGCAAGAGGTAGTCGATGCAGTCATCGC CAACATTGAATAG
AA sequence Show only first row Show all	>Lus10014436 pacid=23143694 polypeptide=Lus10014436 locus=Lus10014436.g ID=Lus10014436.BGIv1.0 annot-version=v1.0 MSRRSFPDLLRRLKAASSSSPHSPTRRSITYMPRPGDGTPRAVTLIPGDGIGPLVTNAVEQVMEAMHAPVFFEKYEVRGDMKQFPPEVLESIKRNKVCIK GGLMTPMGGGVSSLNLQLRKELDLYASLVNCRNMRGLPIRHEKVDIVVGGENTEGEYAGLEHEVVPGVVESLKVITKHCSDRIAEYAFEYAYLNNRKKVT AVHKANIMKLADGLFLESCREVAQKYPAIAYNEIIVDNCCMQLVSRPEQFDVMVTPNLYGNLVANTAAGIAGGTGFMPGGNVGADHAVFEQGASAGNTGN DKIVSQKMANPVALLLSSAMMLRHLQFPSFADRLETAVGKMILEGKYLTKDLGGDSSTQEVVDAVIANIE

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G35260		IDH-I, IDH1	isocitrate dehydrogenase I, is...		Lus10014436 [exp]	0	1
					Lus10003695 [exp]	1.7	1.0000
AT5G47670	CCAAT	NF-YB6, L1L	"nuclear factor Y, subunit B6"...		Lus10008978 [exp]	2.8	1.0000
AT3G55700			UDP-Glycosyltransferase superf...		Lus10040724 [exp]	3.5	1.0000
AT1G10385			Vps51/Vps67 family (components...		Lus10017692 [exp]	3.6	0.9159
					Lus10020958 [exp]	4.0	1.0000
					Lus10021906 [exp]	4.5	1.0000
AT4G35700	C2H2ZnF	DAZ3	DUO1-activated zinc finger 3, ...		Lus10041633 [exp]	4.9	1.0000
AT4G16260			Glycosyl hydrolase superfamily...		Lus10039233 [exp]	6.3	0.8319
AT1G34050			Ankyrin repeat family protein ...		Lus10026590 [exp]	6.5	0.8307
					Lus10024734 [exp]	6.7	0.9033

Compare expression of checked genes

Lus10014436 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.