Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G36800 516 / 1e-180 UGT73C5, DOGT1 UDP-GLUCOSYL TRANSFERASE 73C5, don-glucosyltransferase 1 (.1) AT2G36780 515 / 4e-180 UDP-Glycosyltransferase superfamily protein (.1) AT2G36750 500 / 2e-174 UGT73C1, UGT72C1 UDP-glucosyl transferase 73C1 (.1) AT2G36770 496 / 2e-172 UDP-Glycosyltransferase superfamily protein (.1) AT2G36760 486 / 1e-168 UGT73C2 UDP-glucosyl transferase 73C2 (.1) AT2G36790 482 / 5e-167 UGT73C6 UDP-glucosyl transferase 73C6 (.1) AT3G53160 468 / 1e-161 UGT73C7 UDP-glucosyl transferase 73C7 (.1) AT3G53150 424 / 2e-144 UGT73D1 UDP-glucosyl transferase 73D1 (.1) AT2G15480 362 / 2e-120 UGT73B5 UDP-glucosyl transferase 73B5 (.1.2) AT2G15490 350 / 1e-115 UGT73B4 UDP-glycosyltransferase 73B4 (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10003323 [exp] 603 / 0 AT2G36800 493 / 2e-171 UDP-GLUCOSYL TRANSFERASE 73C5, don-glucosyltransferase 1 (.1) Lus10016268 [exp] 603 / 0 AT2G36780 498 / 1e-173 UDP-Glycosyltransferase superfamily protein (.1) Lus10003322 [exp] 576 / 0 AT2G36780 468 / 9e-162 UDP-Glycosyltransferase superfamily protein (.1) Lus10012011 [exp] 564 / 0 AT2G36780 488 / 8e-170 UDP-Glycosyltransferase superfamily protein (.1) Lus10023939 [exp] 473 / 1e-163 AT2G36780 485 / 7e-169 UDP-Glycosyltransferase superfamily protein (.1) Lus10023894 [exp] 430 / 2e-146 AT2G36780 516 / 0.0 UDP-Glycosyltransferase superfamily protein (.1) Lus10023893 [exp] 426 / 2e-145 AT2G36780 495 / 1e-172 UDP-Glycosyltransferase superfamily protein (.1) Lus10014404 [exp] 423 / 1e-143 AT2G36760 507 / 4e-177 UDP-glucosyl transferase 73C2 (.1) Lus10014403 [exp] 409 / 1e-138 AT2G36780 506 / 6e-177 UDP-Glycosyltransferase superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G048700 [exp] 491 / 9e-171 AT2G36800 550 / 0.0 UDP-GLUCOSYL TRANSFERASE 73C5, don-glucosyltransferase 1 (.1) Potri.006G120600 [exp] 474 / 5e-164 AT3G53150 617 / 0.0 UDP-glucosyl transferase 73D1 (.1) Potri.016G097400 [exp] 468 / 7e-161 AT3G53150 626 / 0.0 UDP-glucosyl transferase 73D1 (.1) Potri.001G303700 [exp] 377 / 4e-126 AT2G15480 558 / 0.0 UDP-glucosyl transferase 73B5 (.1.2) Potri.009G099032 [exp] 376 / 9e-126 AT2G15490 558 / 0.0 UDP-glycosyltransferase 73B4 (.1.2.3) Potri.001G303000 [exp] 375 / 3e-125 AT4G34131 573 / 0.0 UDP-glucosyl transferase 73B3 (.1) Potri.001G303600 [exp] 375 / 3e-125 AT4G34131 568 / 0.0 UDP-glucosyl transferase 73B3 (.1) Potri.001G303300 [exp] 372 / 3e-124 AT2G15480 555 / 0.0 UDP-glucosyl transferase 73B5 (.1.2) Potri.009G098966 [exp] 370 / 1e-123 AT4G34131 588 / 0.0 UDP-glucosyl transferase 73B3 (.1) Potri.001G302300 [exp] 369 / 5e-123 AT4G34131 488 / 4e-170 UDP-glucosyl transferase 73B3 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0113 [flax] [poplar] GT-B PF00201 [flax] [poplar] UDPGT UDP-glucoronosyl and UDP-glucosyl transferase
Representative CDS sequence Show only first row Show all	>Lus10014437 pacid=23143691 polypeptide=Lus10014437 locus=Lus10014437.g ID=Lus10014437.BGIv1.0 annot-version=v1.0 ATGGGTTCCTTATCACCATCAACAAAAACACAACAACTTCACTTCGTTCTATTCCCATTCATGGCACAAGGCCACATGATTCCCATGGTCGACATCGCCA AACTCCTCGCCACCACCGCCACAACTCATCGTTATGATGTCCACGTCACCATCGTCACAACACCTCTCAACGCAGCCCGGTTCGCCACCCCTCTCGCCCG CGCCAACGAAAACCTACCCCTCCCCATCAACCTAGTCCAGTTTCGCTTCCCCTGCACCGAAGCAGGGCTCCCCGAAAACTGCGAGAACTGCGACATGCTC CCTTCGTTGGAATCAATCCTCGGGATCTTCCAGGCCGCCTCGTTGATGGAACCGGATGCCGTTTCCTTATTCGAGAAGCTGGAGCCCAGACCCACGTGCA TCGTCTCTGATTTCTGCTTGCCTTACACCAACAACGTCGCGAAGAAGTTCAACGTTCCGAGGATTAGCTTCCACGGATTTAGCTGCTTCTGTCTCGCGTG CTTGCATTGCATGAAGCTTCACGAGGCAGAAGTCGACCTGAGCGTTAGCTCCGATTTCGACTCGTTCCTCATCCCCGGATTTCCCGGTGGGATCCGGTTC ACCAAGGCTCAGCTTCCCCTGCGAGGCGGGGGCAAGGATAAGGAGAAAAATGCGGAAATCGCCGAGGAAATGAAGAAAGCAGAGTCGGATGCCTACGGCG TGATTGTGAACAGCTTCGAGGAACTGGAGGCAGAGTACTTCGAGCTGTTCAAGGAAGCAAAACAGGGGAAAGTTTGGTGCGTTGGTCCTGTTTCATTGAC CAACCATGACGATTTGGACAAGTTGCAGAGAGGAAATGATGTCACGTCCAATTATCTTGATGAATGCTTCCAGTGGTTGGATACTATGGCACCAGGATCT GTTCTGTACGTTTGCTTGGGATCGATATGCAACCTCGTGTTTCCGCAGCTGAAGGAACTCGCGTTAGGCTTGGAGGAATCCTCCAAGCCGTTCATATGGG CGATACGAGATACCGAAGCCACGAAAGACCTCTACAATTGGATAGCGGATGAAGGATTTGAGGAGAGGGTTTCGGATAGAGGGATGTTAATTAGAGGATG GGCGCCTCAAGTGAAGATACTTTCCCACCCTGCGGTGGGAGGGTTTTTGACACATTGTGGGTGGAATTCCTCGCTGGAAGGAATTAGTGCCGGGGTCCCG CTGGTGACGTGGCCGCTCTTTGGCGATCAGTTTTGCAATGAAAAACTACTCGTTGAGGTATTGAAGACAGGGGTGCGGGTTGGAGCGGAGTGGCCAACGT ATTACGAAGGGGAAGAGGTGACGGGAGCGGCGGTGAAGAGGGAGCAAATCAAGAGAGCAGTGAGATTGGCGATGGACGACGGCGAGGAAGGAGGAGAAAG GAGGAAGAGGGCAAATGAGTTTGGGGAAATGGCTAGGCGAGCTGTGGGGATTGGGGGATCTTCGTATAGGAATGTTGGGGTGTTGATTGATGATGTTGTT CAATGGCATCAAGAGAGGAAATTGGAAGGAGATTTGTATTAG
AA sequence Show only first row Show all	>Lus10014437 pacid=23143691 polypeptide=Lus10014437 locus=Lus10014437.g ID=Lus10014437.BGIv1.0 annot-version=v1.0 MGSLSPSTKTQQLHFVLFPFMAQGHMIPMVDIAKLLATTATTHRYDVHVTIVTTPLNAARFATPLARANENLPLPINLVQFRFPCTEAGLPENCENCDML PSLESILGIFQAASLMEPDAVSLFEKLEPRPTCIVSDFCLPYTNNVAKKFNVPRISFHGFSCFCLACLHCMKLHEAEVDLSVSSDFDSFLIPGFPGGIRF TKAQLPLRGGGKDKEKNAEIAEEMKKAESDAYGVIVNSFEELEAEYFELFKEAKQGKVWCVGPVSLTNHDDLDKLQRGNDVTSNYLDECFQWLDTMAPGS VLYVCLGSICNLVFPQLKELALGLEESSKPFIWAIRDTEATKDLYNWIADEGFEERVSDRGMLIRGWAPQVKILSHPAVGGFLTHCGWNSSLEGISAGVP LVTWPLFGDQFCNEKLLVEVLKTGVRVGAEWPTYYEGEEVTGAAVKREQIKRAVRLAMDDGEEGGERRKRANEFGEMARRAVGIGGSSYRNVGVLIDDVV QWHQERKLEGDLY

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G36780			UDP-Glycosyltransferase superf...		Lus10014437 [exp]	0	1
AT2G34660		EST4, ATMRP2, A...	Arabidopsis thaliana ATP-bindi...		Lus10036153 [exp]	8.9	0.7948
AT3G22600			Bifunctional inhibitor/lipid-t...		Lus10010572 [exp]	13.3	0.8188
AT2G14510			Leucine-rich repeat protein ki...		Lus10028407 [exp]	18.8	0.7919
AT1G76690		OPR2, ATOPR2	ARABIDOPSIS 12-OXOPHYTODIENOAT...		Lus10001274 [exp]	38.3	0.8019
AT3G59140		ATMRP14, ABCC10	ATP-binding cassette C10, mult...		Lus10027567 [exp]	51.2	0.7538
AT1G22150		SULTR1;3	sulfate transporter 1;3 (.1)		Lus10041111 [exp]	60.1	0.7840
AT1G52490			unknown protein		Lus10022937 [exp]	70.8	0.6772
AT5G29000	GARP	PHL1	PHR1-like 1, Homeodomain-like ...		Lus10029607 [exp]	74.5	0.7315
AT1G10810			NAD(P)-linked oxidoreductase s...		Lus10010566 [exp]	81.2	0.7440
AT5G48850		ATSDI1	SULPHUR DEFICIENCY-INDUCED 1, ...		Lus10011872 [exp]	83.7	0.7216

Compare expression of checked genes

Lus10014437 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.