Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G19250 191 / 4e-55 FMO1 flavin-dependent monooxygenase 1 (.1) AT5G45180 171 / 5e-48 Flavin-binding monooxygenase family protein (.1) AT1G12130 58 / 7e-09 Flavin-binding monooxygenase family protein (.1) AT1G62560 56 / 2e-08 FMOGS-OX3 ,FMO GS-OX3 flavin-monooxygenase glucosinolate S-oxygenase 3 (.1) AT1G12160 54 / 1e-07 Flavin-binding monooxygenase family protein (.1) AT1G65860 53 / 2e-07 FMOGS-OX1 ,FMO GS-OX1 flavin-monooxygenase glucosinolate S-oxygenase 1 (.1) AT1G62570 52 / 4e-07 FMOGS-OX4 ,FMO GS-OX4 flavin-monooxygenase glucosinolate S-oxygenase 4 (.1) AT4G13260 51 / 1e-06 YUC2 YUCCA2, Flavin-binding monooxygenase family protein (.1) AT1G63370 50 / 1e-06 Flavin-binding monooxygenase family protein (.1) AT1G62620 50 / 3e-06 Flavin-binding monooxygenase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023940 [exp] 481 / 4e-167 AT1G19250 399 / 3e-134 flavin-dependent monooxygenase 1 (.1) Lus10023942 [exp] 386 / 2e-132 AT5G45180 215 / 4e-65 Flavin-binding monooxygenase family protein (.1) Lus10023941 [exp] 292 / 6e-96 AT1G19250 241 / 2e-75 flavin-dependent monooxygenase 1 (.1) Lus10020001 [exp] 206 / 8e-61 AT1G19250 709 / 0.0 flavin-dependent monooxygenase 1 (.1) Lus10038126 [exp] 204 / 5e-60 AT1G19250 735 / 0.0 flavin-dependent monooxygenase 1 (.1) Lus10005178 [exp] 202 / 4e-59 AT1G19250 744 / 0.0 flavin-dependent monooxygenase 1 (.1) Lus10013230 [exp] 144 / 1e-37 AT1G19250 341 / 2e-111 flavin-dependent monooxygenase 1 (.1) Lus10030750 [exp] 136 / 1e-36 AT1G19250 148 / 5e-41 flavin-dependent monooxygenase 1 (.1) Lus10008454 [exp] 102 / 7e-24 AT1G19250 71 / 3e-13 flavin-dependent monooxygenase 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G143500 [exp] 428 / 1e-146 AT1G19250 400 / 2e-134 flavin-dependent monooxygenase 1 (.1) Potri.006G060200 [exp] 309 / 4e-100 AT1G19250 378 / 5e-126 flavin-dependent monooxygenase 1 (.1) Potri.018G115800 [exp] 298 / 9e-96 AT1G19250 374 / 4e-124 flavin-dependent monooxygenase 1 (.1) Potri.005G250600 [exp] 276 / 2e-87 AT1G19250 330 / 4e-107 flavin-dependent monooxygenase 1 (.1) Potri.006G137600 [exp] 213 / 3e-63 AT1G19250 699 / 0.0 flavin-dependent monooxygenase 1 (.1) Potri.006G060300 [exp] 207 / 5e-62 AT1G19250 285 / 3e-91 flavin-dependent monooxygenase 1 (.1) Potri.001G335900 [exp] 201 / 9e-59 AT1G19250 630 / 0.0 flavin-dependent monooxygenase 1 (.1) Potri.001G121100 [exp] 53 / 2e-07 AT1G62600 607 / 0.0 Flavin-binding monooxygenase family protein (.1) Potri.010G062400 [exp] 49 / 7e-06 AT1G04610 657 / 0.0 YUCCA 3 (.1) Potri.008G174600 [exp] 48 / 1e-05 AT1G04610 686 / 0.0 YUCCA 3 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF00743 [flax] [poplar] FMO-like Flavin-binding monooxygenase-like
Representative CDS sequence Show only first row Show all	>Lus10014439 pacid=23143687 polypeptide=Lus10014439 locus=Lus10014439.g ID=Lus10014439.BGIv1.0 annot-version=v1.0 ATGGCGGATGGTAAAAAGCCGATAGCAATAATTGGAGCAGGAATCAGCGCCCTGCTAGCCTGCAAATACGCACTGTCGAAGAGCTTTCACCTCATAGTCT TCGAATCTCAAACTGCCGTCGGAGGGATATGGACCAAGAACCTCTCCACCACCAAGCTCCAAACTCCGAAACCAGCTTTCCAGTTCTCCGATTTCCCATG GACCGATTCGGTCACCAGCGATTACCCGAATCATGACCAAGTACTCGACTACATCCAGTCGTACGCCGAACATTTCGACTTGATCAATCATGTCCAGTTC GACACCAGAGTTGTAGGGACCACTTACAGAGGCGCTTCTTCGGACGAGGAGATTGAAACATGGGGGAAATGGGAAGTGGAAGTTATGAGAGGAGCAAGCT TTGAGGAGACGGAAGTTTACAAAGTTGGGTTTGTGACGCTCTGTGTATGGAAGTACAGTGAGGTGCCGAATATTCCGAAATTCGCTTCTGGAGAAGGTCC TGAAGTGTTTCGGGGAAAAGCGAGTATTCTGATATGGGAGCTGTGGAGTCTAGGAAAGCACTGGAACCTCCCTGATTACGTGCCATGGGGTTTCCCATTG GCATATCTCTATTTCAACCTGGAGAAGGGCTCTTGCTCAGCCTTCTGGCCACCTTTCTTTCACCTAGTATGGGCTATATCAAAGTTTGTGGAGAGTGACA TCAAGCACAACCATCAACTGGCGAAGCACGGAGTGGTACCGAAGCACAGGTTTATTCAGGACTTAAGTTCGTGTCTAATCGCTACAGTCCCTGACAAAGT CTACGACAAGGTCAAAGAGGGGAGCATCATAATGACGAAAGCTCCAACCTTTAGTTTCTGCGAGGAAAGGATAATTGTCAAAGGTTTCAAAGGGGAGAAG AAGCTCCAAGACATCTTTCGATCGAAAAAGTTCCGTGAACTCATCACCGGCTCTCCAAATGCTGCCCTTCCCCTGTACAGGGACTGCATTCCTCCGCAAA TCCCACAACTCGCGGTGTTAGGGTTCTCGGAGAGCCTGTCGAACCAGTGGCTGAAGGAGCTCCTCGACGGGAAGTTCAAACTTCCAAAGATCGAGGAGAT GGAGAAGGATACTGCGAGGTGGGATGGGTATCTCGAGGAATATGGAGGGGAGTACTACAAGAGGTCGTGCATTGGTAGCTTGCATATATGGCAAAACGAC CAGCTTTGCAAGGACATGGGCTGGAACCCGAGCGGAAGAGTGGGATTTGGGTGGAATTGTTCGAGCCTTACGTCCCGTTGGACTACATGTCACCTTAATC AGGAAGTAAACCACAAAAGAAAACTATATAGAAAAACTAAGAATGAGGATCAATGA
AA sequence Show only first row Show all	>Lus10014439 pacid=23143687 polypeptide=Lus10014439 locus=Lus10014439.g ID=Lus10014439.BGIv1.0 annot-version=v1.0 MADGKKPIAIIGAGISALLACKYALSKSFHLIVFESQTAVGGIWTKNLSTTKLQTPKPAFQFSDFPWTDSVTSDYPNHDQVLDYIQSYAEHFDLINHVQF DTRVVGTTYRGASSDEEIETWGKWEVEVMRGASFEETEVYKVGFVTLCVWKYSEVPNIPKFASGEGPEVFRGKASILIWELWSLGKHWNLPDYVPWGFPL AYLYFNLEKGSCSAFWPPFFHLVWAISKFVESDIKHNHQLAKHGVVPKHRFIQDLSSCLIATVPDKVYDKVKEGSIIMTKAPTFSFCEERIIVKGFKGEK KLQDIFRSKKFRELITGSPNAALPLYRDCIPPQIPQLAVLGFSESLSNQWLKELLDGKFKLPKIEEMEKDTARWDGYLEEYGGEYYKRSCIGSLHIWQND QLCKDMGWNPSGRVGFGWNCSSLTSRWTTCHLNQEVNHKRKLYRKTKNEDQ

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G19250		FMO1	flavin-dependent monooxygenase...		Lus10014439 [exp]	0	1
AT2G38900			Serine protease inhibitor, pot...		Lus10003225 [exp]	6.9	0.8159
AT3G63240			DNAse I-like superfamily prote...		Lus10022074 [exp]	9.5	0.7378
AT3G13040	GARP		myb-like HTH transcriptional r...		Lus10037296 [exp]	9.9	0.7480
AT2G41970			Protein kinase superfamily pro...		Lus10021070 [exp]	13.3	0.6813
AT1G16470		PAB1	proteasome subunit PAB1 (.1.2)		Lus10017135 [exp]	15.0	0.8021
AT2G31140			Peptidase S24/S26A/S26B/S26C f...		Lus10022921 [exp]	16.0	0.7942
AT3G52270			Transcription initiation facto...		Lus10030963 [exp]	18.7	0.7710
AT1G76860			Small nuclear ribonucleoprotei...		Lus10026326 [exp]	18.8	0.7865
AT5G35180			Protein of unknown function (D...		Lus10040011 [exp]	23.7	0.7478
AT4G36800		RCE1	RUB1 conjugating enzyme 1 (.1....		Lus10014329 [exp]	29.7	0.7811

Compare expression of checked genes

Lus10014439 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.