Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G38380 496 / 3e-171 MATE efflux family protein (.1) AT2G38330 335 / 5e-109 MATE efflux family protein (.1) AT1G51340 276 / 2e-86 MATE efflux family protein (.1.2) AT3G08040 261 / 2e-80 ATFRD3, MAN1, FRD3 MANGANESE ACCUMULATOR 1, FERRIC REDUCTASE DEFECTIVE 3, MATE efflux family protein (.1.2) AT2G21340 69 / 6e-12 MATE efflux family protein (.1.2) AT4G39030 62 / 6e-10 SCORD3, SID1, EDS5 SALICYLIC ACID INDUCTION DEFICIENT 1, susceptible to coronatine-deficient Pst DC3000 3, ENHANCED DISEASE SUSCEPTIBILITY 5, MATE efflux family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023943 [exp] 949 / 0 AT4G38380 593 / 0.0 MATE efflux family protein (.1) Lus10026829 [exp] 776 / 0 AT4G38380 535 / 0.0 MATE efflux family protein (.1) Lus10014441 [exp] 751 / 0 AT4G38380 501 / 2e-167 MATE efflux family protein (.1) Lus10020203 [exp] 396 / 5e-136 AT4G38380 174 / 3e-50 MATE efflux family protein (.1) Lus10012227 [exp] 330 / 2e-106 AT2G38330 608 / 0.0 MATE efflux family protein (.1) Lus10023944 [exp] 324 / 2e-106 AT4G38380 154 / 1e-41 MATE efflux family protein (.1) Lus10002856 [exp] 260 / 2e-80 AT2G38330 477 / 2e-165 MATE efflux family protein (.1) Lus10039609 [exp] 258 / 5e-79 AT3G08040 619 / 0.0 MANGANESE ACCUMULATOR 1, FERRIC REDUCTASE DEFECTIVE 3, MATE efflux family protein (.1.2) Lus10016412 [exp] 250 / 6e-76 AT1G51340 569 / 0.0 MATE efflux family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G143400 [exp] 608 / 0 AT4G38380 626 / 0.0 MATE efflux family protein (.1) Potri.004G183600 [exp] 592 / 0 AT4G38380 604 / 0.0 MATE efflux family protein (.1) Potri.005G102800 [exp] 496 / 3e-171 AT4G38380 547 / 0.0 MATE efflux family protein (.1) Potri.016G126000 [exp] 332 / 4e-107 AT2G38330 499 / 9e-173 MATE efflux family protein (.1) Potri.009G053700 [exp] 280 / 2e-87 AT1G51340 634 / 0.0 MATE efflux family protein (.1.2) Potri.001G266900 [exp] 275 / 2e-85 AT3G08040 598 / 0.0 MANGANESE ACCUMULATOR 1, FERRIC REDUCTASE DEFECTIVE 3, MATE efflux family protein (.1.2) Potri.009G061100 [exp] 270 / 2e-83 AT3G08040 566 / 0.0 MANGANESE ACCUMULATOR 1, FERRIC REDUCTASE DEFECTIVE 3, MATE efflux family protein (.1.2) Potri.016G053600 [exp] 266 / 2e-82 AT1G51340 543 / 0.0 MATE efflux family protein (.1.2) Potri.009G122900 [exp] 86 / 1e-17 AT2G21340 684 / 0.0 MATE efflux family protein (.1.2) Potri.009G122600 [exp] 72 / 6e-13 AT2G21340 646 / 0.0 MATE efflux family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0222 [flax] [poplar] MviN_MATE PF01554 [flax] [poplar] MatE MatE
Representative CDS sequence Show only first row Show all	>Lus10014440 pacid=23143688 polypeptide=Lus10014440 locus=Lus10014440.g ID=Lus10014440.BGIv1.0 annot-version=v1.0 ATGAGTACTACTAGTCAGTTTGGTGGCGGTAAGCTTTCTAGAGTAGTGACAGGTAGAACAAAACTTACAAAGAGGTCTTCTTTCTGGGCTTCCCATAGTC TATCTGCCAAAGGATTTGGTTGTAGAGATGGTACTACGAGAAATTACTTGTCTGCTGAGTATAGAGATCGATTGTCACCAGTACTGACTCGTCGTAGGAC GCACGATTCGGTGGTGGTTTATAATAAGTCAGCTTCAGGCTATGGCATTAATTCTGCTGATGTAGAGGAGAGTTTGGAGTTTGAAGAAGGAGGTGTTGCC AAGGGTTCTGCACATGAGACATTTGACGCTAATAAAGTTCCGGTTGAGAAGAAACTTCATCCTCCGAATGTTAAGCGTGAGCTGGCTATGCTGACATTGC CTGCGATTGGGGTACAAGCAATCGACCCTTTTGCGCAACTAATGGAGACTGCCTTTATCGGTAGAATAGGTTCGATCGAGTTAGGTTCAGCTGGTGTTGC CACTATGATCTTCAACAACATTTCCAAGCTACTCAACATTCCTCTTCTAAGTGTATCAACTTCTTTTGTTGCCGAGGACATTGCAAAGCATGCAGCCATT GATTCTACTGCAGCCAAAGAAGGCCATACTAATGGCGCACTAGTCGATAAGGTGGTCAAAAGGAAGCAACTGGCTTCCGTGTCTACTGCATTACTGCTAG CCATTGGAATAGGAATCTTTGAGGCGACAGCTTTGTCCTTGGGACGTGGTCCATTTCTTGGCTTAATGGGGCACACCAATGCGAAGCAAACCGCAGCAGA GAGATTTCTTTCAGTGAGGGCGCGGGGAGCCCCTGCCGTTGTAATGTCTTTGGCTCTTCAAGGCATATTCCGCGGCTTCAAGGATACTAAGACTCCTCTT CTTTGCATAGGTCTTGGTAATTTGTCATTAGTGTTTCTGTTTCCTTTGCTGCTGTATCAGCTTAAGTTAGGCGTCACTGGCGCAGCACTTGCAACTGTCC TGTCTCAATTTCTTGCGACCCTTTTAATGCTGTGGAATCTCAATAAGAAGGTTGTACTACTGCCTCCGAGGATCGCAGCTGCTCGTCAAGGAACAATGGC CATGGCAGGGCATCAAATATGCATGCAAGTTTGGTTAGCTGTGTCTCTACTTACCGATGCTGTAGCTTTGTCTGCCCAGGCTATGGTTGCGAGTTATTCA TCAAAACGTGATTATGTCAATGCAAGAGAAGTCACAAACTTGGTGTTGAAGGTTGGCTTATTCACAGGCCTTGCATTGGCTGCCATACTTGGCTTATCAT TCGGCTCCATAGCCAAGTTGTTCACCGCAGATGCTGAATTACTACAGGTCGTAAACACTGGTGTATTGTTTGTTTGCGCCAGTCAACCTTTGAACGCTCT AGCTTACATCTTCGACGGCCTCCACTTTGGCGTCTCTGACTTCCCATATGCAGCCTGCTCGATGATGACGGTTGGAGCCATATGTTCAGTGTTTCTACTC TACGTCCCTCGAATTCTCGGGCTTCATGGTGTTTGGTCAGGCTTGGCTCTCTTCATGGCCCTACGAACAGGAGCCGGAATCGCAAGACTGATGCAGACAT CGGGGCCTTGGTGGTTCTTACACAAGGACTTGCAGAGTTACCAGGTTGGTTAG
AA sequence Show only first row Show all	>Lus10014440 pacid=23143688 polypeptide=Lus10014440 locus=Lus10014440.g ID=Lus10014440.BGIv1.0 annot-version=v1.0 MSTTSQFGGGKLSRVVTGRTKLTKRSSFWASHSLSAKGFGCRDGTTRNYLSAEYRDRLSPVLTRRRTHDSVVVYNKSASGYGINSADVEESLEFEEGGVA KGSAHETFDANKVPVEKKLHPPNVKRELAMLTLPAIGVQAIDPFAQLMETAFIGRIGSIELGSAGVATMIFNNISKLLNIPLLSVSTSFVAEDIAKHAAI DSTAAKEGHTNGALVDKVVKRKQLASVSTALLLAIGIGIFEATALSLGRGPFLGLMGHTNAKQTAAERFLSVRARGAPAVVMSLALQGIFRGFKDTKTPL LCIGLGNLSLVFLFPLLLYQLKLGVTGAALATVLSQFLATLLMLWNLNKKVVLLPPRIAAARQGTMAMAGHQICMQVWLAVSLLTDAVALSAQAMVASYS SKRDYVNAREVTNLVLKVGLFTGLALAAILGLSFGSIAKLFTADAELLQVVNTGVLFVCASQPLNALAYIFDGLHFGVSDFPYAACSMMTVGAICSVFLL YVPRILGLHGVWSGLALFMALRTGAGIARLMQTSGPWWFLHKDLQSYQVG

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G38380			MATE efflux family protein (.1...		Lus10014440 [exp]	0	1
AT2G31870		PARG1, TEJ	Sanskrit for 'bright', poly\(A...		Lus10033474 [exp]	2.2	0.8227
AT1G67690			Zincin-like metalloproteases f...		Lus10036925 [exp]	7.5	0.8008
AT1G67690			Zincin-like metalloproteases f...		Lus10037058 [exp]	12.0	0.7854
AT1G33420			RING/FYVE/PHD zinc finger supe...		Lus10039160 [exp]	44.1	0.7314
AT2G06040			unknown protein		Lus10033320 [exp]	44.5	0.7366
AT5G42920		AtTHO5	THO complex, subunit 5 (.1.2)		Lus10009754 [exp]	49.3	0.7586
					Lus10012594 [exp]	58.6	0.7401
AT1G23030		PUB11	ARM repeat superfamily protein...		Lus10013745 [exp]	66.5	0.7558
AT2G39260			binding;RNA binding (.1)		Lus10023481 [exp]	77.7	0.7203
AT1G11060			WAPL (Wings apart-like protein...		Lus10005857 [exp]	84.7	0.7443

Compare expression of checked genes

Lus10014440 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.