Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G38380 465 / 3e-153 MATE efflux family protein (.1) AT2G38330 327 / 5e-101 MATE efflux family protein (.1) AT1G51340 267 / 4e-79 MATE efflux family protein (.1.2) AT3G08040 266 / 1e-78 ATFRD3, MAN1, FRD3 MANGANESE ACCUMULATOR 1, FERRIC REDUCTASE DEFECTIVE 3, MATE efflux family protein (.1.2) AT2G17120 252 / 1e-75 LYM2 lysm domain GPI-anchored protein 2 precursor (.1) AT1G77630 124 / 5e-30 LYM3 lysin-motif \(LysM\) domain protein 3, Peptidoglycan-binding LysM domain-containing protein (.1) AT1G21880 122 / 2e-29 LYM1 lysm domain GPI-anchored protein 1 precursor (.1.2) AT2G21340 51 / 3e-06 MATE efflux family protein (.1.2) AT2G23770 51 / 4e-06 protein kinase family protein / peptidoglycan-binding LysM domain-containing protein (.1) AT4G39030 49 / 2e-05 SCORD3, SID1, EDS5 SALICYLIC ACID INDUCTION DEFICIENT 1, susceptible to coronatine-deficient Pst DC3000 3, ENHANCED DISEASE SUSCEPTIBILITY 5, MATE efflux family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023943 [exp] 781 / 0 AT4G38380 593 / 0.0 MATE efflux family protein (.1) Lus10014440 [exp] 737 / 0 AT4G38380 527 / 0.0 MATE efflux family protein (.1) Lus10026829 [exp] 709 / 0 AT4G38380 535 / 0.0 MATE efflux family protein (.1) Lus10023945 [exp] 536 / 0 AT2G17120 280 / 4e-92 lysm domain GPI-anchored protein 2 precursor (.1) Lus10026372 [exp] 397 / 8e-130 AT2G17120 249 / 3e-80 lysm domain GPI-anchored protein 2 precursor (.1) Lus10022630 [exp] 376 / 4e-122 AT2G17120 255 / 1e-82 lysm domain GPI-anchored protein 2 precursor (.1) Lus10003326 [exp] 376 / 6e-122 AT2G17120 255 / 1e-82 lysm domain GPI-anchored protein 2 precursor (.1) Lus10023944 [exp] 368 / 2e-118 AT4G38380 154 / 1e-41 MATE efflux family protein (.1) Lus10020203 [exp] 341 / 1e-109 AT4G38380 174 / 3e-50 MATE efflux family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G143400 [exp] 577 / 0 AT4G38380 626 / 0.0 MATE efflux family protein (.1) Potri.004G183600 [exp] 566 / 0 AT4G38380 604 / 0.0 MATE efflux family protein (.1) Potri.005G102800 [exp] 454 / 4e-149 AT4G38380 547 / 0.0 MATE efflux family protein (.1) Potri.004G183500 [exp] 352 / 5e-113 AT2G17120 318 / 3e-107 lysm domain GPI-anchored protein 2 precursor (.1) Potri.009G143300 [exp] 345 / 2e-110 AT2G17120 311 / 1e-104 lysm domain GPI-anchored protein 2 precursor (.1) Potri.016G126000 [exp] 329 / 2e-101 AT2G38330 499 / 9e-173 MATE efflux family protein (.1) Potri.016G053600 [exp] 279 / 2e-83 AT1G51340 543 / 0.0 MATE efflux family protein (.1.2) Potri.009G053700 [exp] 278 / 5e-83 AT1G51340 634 / 0.0 MATE efflux family protein (.1.2) Potri.001G266900 [exp] 265 / 4e-78 AT3G08040 598 / 0.0 MANGANESE ACCUMULATOR 1, FERRIC REDUCTASE DEFECTIVE 3, MATE efflux family protein (.1.2) Potri.009G061100 [exp] 258 / 2e-75 AT3G08040 566 / 0.0 MANGANESE ACCUMULATOR 1, FERRIC REDUCTASE DEFECTIVE 3, MATE efflux family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0222 [flax] [poplar] MviN_MATE PF01554 [flax] [poplar] MatE MatE CL0187 [flax] [poplar] LysM PF01476 [flax] [poplar] LysM LysM domain
Representative CDS sequence Show only first row Show all	>Lus10014441 pacid=23143704 polypeptide=Lus10014441 locus=Lus10014441.g ID=Lus10014441.BGIv1.0 annot-version=v1.0 ATGAACCGGCGCCACGTACCCGCTCTCTTGCTCTTCCTTCTCATCACAATCTCTACACTCCTCGCTCCACCCACCACCGCCACCACCTTCAAGTGCAACA CCACCACCACTTCCCCTTTGAAATGCCACTCTTTAATCGACTACATCTCCCCTCAAAACGCCACCACAACATTCGGCGCCGTCCAAACCCTCTTCGCAAT CCGAAACCTCCGCTCATTATTGGGAGCCAACAGCCTCCCTCTGTCCACTCTTCCAAACCAAACCATCCCGCCGAAACAGAGCCTCAGAATCCGCTTCCCC TGCCTCTGCCGCGGCGGCGCCGGTGTATCGAACAAGCTGCCGGTTTACACCGTGAAGAAGGGCGATGGGCTCTTCGACATTGCTACGGAAGTGTTCGCCG GAGTTGTGACCGCCGACGAGATTGCTGCCGTGAACAATGTGACGGATAAGGATCTGATCAAGGTGGGGCAGAGGCTGTGGATTCCTCTGCCTTGTAGCTG CGATGACGCGGACGGTGGTGGTAAGGTGGTGCATTATGGACACGTGGTGGCACCTGGCAGCTCCATTGATTCGATTGCTGCGAAGTTTGGGAGTAGCGTT GATGTTTTGATGGGTGTTAATGGGTTGAAGAACGGGTCGGGTTTGTTGGCGGGTCAAGTTCTTGATGTCCCTCTAAGAGCTTGTAATTCGTCAATTCGAC CCGATTCTGAAGACTCGGGGCTGCTGTTAGCCAACGGGACTTATGCCTTCACTGCTCACAATTGCGTCCAATGCAATTGTGATGCCTCGAACAATTGGAC GTTGAGGTGCCAGCCATCCGGGGTTAAGCCGTCAGATCCTTGGTCAACTTGCCCTGCTACGCAATGTGAAGGAGGTAATGGCGTAATGTTGGGGAACTCG ACTGCTTCGGATTGCGGTAGCGCCATCTGCTCCTACGCCGGTTACACTTCCAACCAAACCATCTTCGCCTCACTTGACAGCACCTGCCCCGGGGCCAGCC CCTCCGGCACCCCCCGAATATACTCTCAGCAGCTGAAACTCCACTCCGGTAGCCCTCCCTTTCTACGAGATCGACTGTCACCAGTGGTGACTCGTCGTAG GAGGCATGGTTCGGTGTTGGTTTATAATCAGTCAGCTTCGGGCTATGGGGTTGATTCTGCTGATGTAGAGGAGAGTTTCGAGTTAGAAGAAGGAGGTGTT GCCAATGGTTCTGCACATGAGACATTTGACGCTATAGGGGTTCCAGTTGAGAAGAGATCTCATCCTACAAATGTTAAACGCGAGCTGGCTATGCTGACAT TGTCTACGATTGGGGTACTAACAATCGACCTTTTTGCGCAACTAATGGAGACTGCCTTTATTGGTAGAATAGGTTCGATCGAGCTAGGTTCAGCTGGTGT TGCCACTATTGTCTTCAACAATATTTCCAAGCTATTGAACATTCCTCTTCTAAGTGTATCAACTTCTTTTGTTGCCGAGGACATTGCGAAGCATGCAGCC GTCGATTCTACTGCAGCAGAAGAAGGGCATACTAATGGCTCAATAACCGGTAAGGTGGTCAAGAGGAAGCAACTGGCTTCCGTGTCTACTGCATTACTGC TAGCCATTGGAATAGGAATCTTTGAGGCTACAGCGTTGTCCTTGGGATGTGGTCCATTTCTTGGCTTGATGGGTGTAACACCGGGCACACCAATGCGAAT CCCAGCAGAGAGATTTCTTTCAGTAAAGGCACTGGGTGCTCCTGCCGTTGCAATGTCTTTGGCTCTTCATGGCATATTCCGCGGCTTCAAGGATACTAAA ACTCCTCTTTTTTGCATGGGTATCGGTAATTTGTCATTAGTGTTTCTGTTTCCTTTGCTGCTGTATCAGCTTAAGTTAGGCGTCACTGGCGCAGCACTTG CAACTGTCCTGTCTCAATTTCTTGCGACCCTTTTAATGCTGTGGAATCTCAATAAGAAGGTTGTACTACTGCCTCCGAGGATCGCAGATTTACAATTGGG TGTCTTTATGAAGTCTGAGATTCTTAACGAGAGTTCTCTGCACAGGCGGTTTCCTTATTGGAAGTACTTCTTTATGAGAAGACCTCTTGCTGTTTGGCCA ACCATGACCTTGGCCACAGCCATGGCTGCTCGTCAAGGAACAATGGCCATGGCAGGGCATCAGATATGCATGCAAGTTTGGTTGGCTGTGTCTCTACTTA CCGATGCAGTGGGTATGTCTGCTCAGACTATGGTTGCAAGTTATTCATCAAAACGCGATTATGTGAATGCAAGAGAAGTCACAAACTTGGCGTTGAAGGT TGGCTTATTTACAGGCCTTTCATTGGCCGCCATACTTGGCTTATCATTCGGCTCCATAGCCAAGTTTTTCACCGCAGATGCTGAATTACTACAAGTCGTA AACACCGGTGCATTGGTAAGTCCCATTCTTTGCATTCCTGCTTCTTGTTCTGACCTCCATAGTTTCTTCTCATCTTTTCAAGTGTTCCTCGGAACTTTCG TCCAGTTTGTTTGCGCCAGTCAACCTTTGAATGCTCTAGCTTACATCTTTGATGGCCTCCACTTTGGCGTCTCTGACTTCCCGTATGCAGCCTGCTCGAT GATGACGGTTGGAGCCATATGTTCAGTGTTTCTACTCTACGGCCATCGACTTCTCGGGCTTCATGGTGTTTGGTCAGGCTTGGCTCTCTTCATGGCCCTA CGAACAGGAGCCGGAATCGCAAGGCACCATGTCCTTGCAAAGCTGGTCGTTATGCCATACATGCAAGGTGCCAATGCACGACCTCTCATAGTACTCCCCT CCATATTCCTTGAGATACCCGTCCCACTTCGCAGTATCCTTCTCCATCTCCTCGATCTTCGGAAGCTTGAACTTCCCGTCGAGGAGCTTCATCAGCCACC AGCACCTCACCTCCGAAGTGAACAGGTTCGACAGGCTCTCCGAGAACCCTAG
AA sequence Show only first row Show all	>Lus10014441 pacid=23143704 polypeptide=Lus10014441 locus=Lus10014441.g ID=Lus10014441.BGIv1.0 annot-version=v1.0 MNRRHVPALLLFLLITISTLLAPPTTATTFKCNTTTTSPLKCHSLIDYISPQNATTTFGAVQTLFAIRNLRSLLGANSLPLSTLPNQTIPPKQSLRIRFP CLCRGGAGVSNKLPVYTVKKGDGLFDIATEVFAGVVTADEIAAVNNVTDKDLIKVGQRLWIPLPCSCDDADGGGKVVHYGHVVAPGSSIDSIAAKFGSSV DVLMGVNGLKNGSGLLAGQVLDVPLRACNSSIRPDSEDSGLLLANGTYAFTAHNCVQCNCDASNNWTLRCQPSGVKPSDPWSTCPATQCEGGNGVMLGNS TASDCGSAICSYAGYTSNQTIFASLDSTCPGASPSGTPRIYSQQLKLHSGSPPFLRDRLSPVVTRRRRHGSVLVYNQSASGYGVDSADVEESFELEEGGV ANGSAHETFDAIGVPVEKRSHPTNVKRELAMLTLSTIGVLTIDLFAQLMETAFIGRIGSIELGSAGVATIVFNNISKLLNIPLLSVSTSFVAEDIAKHAA VDSTAAEEGHTNGSITGKVVKRKQLASVSTALLLAIGIGIFEATALSLGCGPFLGLMGVTPGTPMRIPAERFLSVKALGAPAVAMSLALHGIFRGFKDTK TPLFCMGIGNLSLVFLFPLLLYQLKLGVTGAALATVLSQFLATLLMLWNLNKKVVLLPPRIADLQLGVFMKSEILNESSLHRRFPYWKYFFMRRPLAVWP TMTLATAMAARQGTMAMAGHQICMQVWLAVSLLTDAVGMSAQTMVASYSSKRDYVNAREVTNLALKVGLFTGLSLAAILGLSFGSIAKFFTADAELLQVV NTGALVSPILCIPASCSDLHSFFSSFQVFLGTFVQFVCASQPLNALAYIFDGLHFGVSDFPYAACSMMTVGAICSVFLLYGHRLLGLHGVWSGLALFMAL RTGAGIARHHVLAKLVVMPYMQGANARPLIVLPSIFLEIPVPLRSILLHLLDLRKLELPVEELHQPPAPHLRSEQVRQALREP

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G38380			MATE efflux family protein (.1...		Lus10014441 [exp]	0	1
					Lus10024691 [exp]	10.1	0.7563
AT1G75820		ATCLV1, FLO5, F...	FLOWER DEVELOPMENT 5, FASCIATA...		Lus10013562 [exp]	13.4	0.7617
AT5G60370			unknown protein		Lus10038466 [exp]	17.1	0.7431
AT2G28550	AP2_ERF	TOE1, RAP2.7	TARGET OF EARLY ACTIVATION TAG...		Lus10015055 [exp]	17.3	0.7653
AT1G22460			O-fucosyltransferase family pr...		Lus10008719 [exp]	24.5	0.7403
AT3G06950			Pseudouridine synthase family ...		Lus10039480 [exp]	26.8	0.7362
AT1G80660		AHA9	H\(+\)-ATPase 9, H\(+\)-ATPase...		Lus10026093 [exp]	32.7	0.7389
AT4G24560		UBP16	ubiquitin-specific protease 16...		Lus10009273 [exp]	34.2	0.7532
AT5G14580			polyribonucleotide nucleotidyl...		Lus10022250 [exp]	39.3	0.7488
AT4G33350		AtTic22-IV	translocon at the inner envelo...		Lus10009759 [exp]	39.5	0.7150

Compare expression of checked genes

Lus10014441 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.