Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G17120 222 / 9e-72 LYM2 lysm domain GPI-anchored protein 2 precursor (.1) AT1G21880 86 / 1e-19 LYM1 lysm domain GPI-anchored protein 1 precursor (.1.2) AT1G77630 77 / 2e-16 LYM3 lysin-motif \(LysM\) domain protein 3, Peptidoglycan-binding LysM domain-containing protein (.1) AT2G23770 52 / 1e-07 protein kinase family protein / peptidoglycan-binding LysM domain-containing protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023946 [exp] 222 / 7e-75 AT2G17120 138 / 6e-41 lysm domain GPI-anchored protein 2 precursor (.1) Lus10023945 [exp] 195 / 8e-61 AT2G17120 280 / 4e-92 lysm domain GPI-anchored protein 2 precursor (.1) Lus10014441 [exp] 192 / 2e-56 AT4G38380 501 / 2e-167 MATE efflux family protein (.1) Lus10022630 [exp] 166 / 5e-50 AT2G17120 255 / 1e-82 lysm domain GPI-anchored protein 2 precursor (.1) Lus10003326 [exp] 164 / 8e-49 AT2G17120 255 / 1e-82 lysm domain GPI-anchored protein 2 precursor (.1) Lus10026372 [exp] 159 / 6e-47 AT2G17120 249 / 3e-80 lysm domain GPI-anchored protein 2 precursor (.1) Lus10025643 [exp] 89 / 2e-20 AT1G21880 547 / 0.0 lysm domain GPI-anchored protein 1 precursor (.1.2) Lus10018191 [exp] 88 / 4e-20 AT1G21880 550 / 0.0 lysm domain GPI-anchored protein 1 precursor (.1.2) Lus10041323 [exp] 66 / 4e-12 AT2G23770 202 / 2e-56 protein kinase family protein / peptidoglycan-binding LysM domain-containing protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G143300 [exp] 227 / 1e-73 AT2G17120 311 / 1e-104 lysm domain GPI-anchored protein 2 precursor (.1) Potri.004G183500 [exp] 223 / 4e-72 AT2G17120 318 / 3e-107 lysm domain GPI-anchored protein 2 precursor (.1) Potri.005G176700 [exp] 84 / 9e-19 AT1G21880 548 / 0.0 lysm domain GPI-anchored protein 1 precursor (.1.2) Potri.002G084800 [exp] 84 / 9e-19 AT1G21880 554 / 0.0 lysm domain GPI-anchored protein 1 precursor (.1.2) Potri.010G078700 [exp] 64 / 8e-12 AT2G23770 288 / 5e-89 protein kinase family protein / peptidoglycan-binding LysM domain-containing protein (.1) Potri.015G085350 [exp] 50 / 2e-07 AT2G23770 125 / 7e-33 protein kinase family protein / peptidoglycan-binding LysM domain-containing protein (.1) Potri.005G128200 [exp] 50 / 5e-07 AT2G23770 514 / 4e-176 protein kinase family protein / peptidoglycan-binding LysM domain-containing protein (.1) Potri.005G128300 [exp] 44 / 5e-05 AT2G23770 394 / 2e-129 protein kinase family protein / peptidoglycan-binding LysM domain-containing protein (.1) Potri.009G010300 [exp] 42 / 0.0002 AT2G23770 234 / 3e-68 protein kinase family protein / peptidoglycan-binding LysM domain-containing protein (.1) Potri.001G190200 [exp] 40 / 0.0006 AT1G51940 824 / 0.0 protein kinase family protein / peptidoglycan-binding LysM domain-containing protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0187 [flax] [poplar] LysM PF01476 [flax] [poplar] LysM LysM domain
Representative CDS sequence Show only first row Show all	>Lus10014442 pacid=23143708 polypeptide=Lus10014442 locus=Lus10014442.g ID=Lus10014442.BGIv1.0 annot-version=v1.0 ATGAATACCCATGTCTCCTTCTCCTCCTTATTCGTGTTCTTCGCTCTCCTCCTCTGTTCCCTTCCCGCCAAGTCGGCAGCTCAGCCGCAACGAAGATTCC AGTGCACGCCCAACGCCACGTGCCGGTCTCTCATAGGCTACAAGTCCCGGAACGCCACCACCCTCGCCGGCATCCAGCGATTCTTCGACGTGAAGAACTT CCGCAACATACTAGGATGGAACGGCCTACCGGAGTCGACCCCACCGAGCTACCGTGTGGCCGCGAACCAGGTGGTCCGGGTCCCCGTCCCTTGTGTTTGC TTTAACGGGTCTGGAGTGTCCAACAAGGTGCCTGTGTACTCGGTTCAGCCGGGAGATGGGCTTTTCGTGATCGCGTCCAGTGAGTTCCTGGGCCTGGTGA AGTACGAGCAGATCGTGGCTGTTAACAATATCGCGGACCCGAATTTGATCGAGGTGGGCCAGAAGCTGTGGATCCCGCTGCCGTGTAGCTGCGAGGACGT CGACGGGGAGAGGGTGGTGCATTACACTCACGTGGTGGTCGGAGGGAGTTCCGTAGAGGAGATCGCGGCGGAGTTTGGGACGACCAACGAGACGTTGTAT CGGCTTAATGGGATTCAGAGTGATGCTCAGCTTATCGAAGGCGATCCCTTTGATGTTCCTCTTAAAGGTTAG
AA sequence Show only first row Show all	>Lus10014442 pacid=23143708 polypeptide=Lus10014442 locus=Lus10014442.g ID=Lus10014442.BGIv1.0 annot-version=v1.0 MNTHVSFSSLFVFFALLLCSLPAKSAAQPQRRFQCTPNATCRSLIGYKSRNATTLAGIQRFFDVKNFRNILGWNGLPESTPPSYRVAANQVVRVPVPCVC FNGSGVSNKVPVYSVQPGDGLFVIASSEFLGLVKYEQIVAVNNIADPNLIEVGQKLWIPLPCSCEDVDGERVVHYTHVVVGGSSVEEIAAEFGTTNETLY RLNGIQSDAQLIEGDPFDVPLKG

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G17120		LYM2	lysm domain GPI-anchored prote...		Lus10014442 [exp]	0	1
AT5G04310			Pectin lyase-like superfamily ...		Lus10040426 [exp]	2.0	0.8032
AT5G46330		FLS2	FLAGELLIN-SENSITIVE 2, Leucine...		Lus10023323 [exp]	2.4	0.7786
AT2G38290		AMT2;1, ATAMT2	AMMONIUM TRANSPORTER 2;1, ammo...		Lus10002208 [exp]	3.9	0.7605
AT5G20480		EFR	EF-TU receptor (.1)		Lus10022864 [exp]	5.4	0.8303
AT3G25882		NIMIN-2	NIM1-interacting 2 (.1)		Lus10034312 [exp]	9.8	0.7448
AT2G29060	GRAS		GRAS family transcription fact...		Lus10016520 [exp]	19.2	0.7414
AT1G34420			leucine-rich repeat transmembr...		Lus10009429 [exp]	30.3	0.7135
AT4G21380		ARK3	receptor kinase 3 (.1)		Lus10025891 [exp]	30.8	0.7675
AT3G10150		ATPAP16, PAP16	purple acid phosphatase 16 (.1...		Lus10031039 [exp]	32.7	0.7428
AT5G53110			RING/U-box superfamily protein...		Lus10019018 [exp]	35.3	0.7227

Compare expression of checked genes

Lus10014442 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.