Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G60620 611 / 0 GPAT9 glycerol-3-phosphate acyltransferase 9 (.1) AT1G80950 56 / 3e-08 Phospholipid/glycerol acyltransferase family protein (.1) AT2G45670 54 / 1e-07 calcineurin B subunit-related (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023947 [exp] 664 / 0 AT5G60620 655 / 0.0 glycerol-3-phosphate acyltransferase 9 (.1) Lus10015853 [exp] 59 / 3e-09 AT2G45670 672 / 0.0 calcineurin B subunit-related (.1.2) Lus10009312 [exp] 57 / 1e-08 AT2G45670 671 / 0.0 calcineurin B subunit-related (.1.2) Lus10032706 [exp] 56 / 2e-08 AT1G80950 378 / 5e-130 Phospholipid/glycerol acyltransferase family protein (.1) Lus10003950 [exp] 56 / 4e-08 AT1G80950 492 / 4e-174 Phospholipid/glycerol acyltransferase family protein (.1) Lus10036544 [exp] 53 / 3e-07 AT2G45670 692 / 0.0 calcineurin B subunit-related (.1.2) Lus10041384 [exp] 52 / 4e-07 AT2G45670 647 / 0.0 calcineurin B subunit-related (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G143200 [exp] 653 / 0 AT5G60620 679 / 0.0 glycerol-3-phosphate acyltransferase 9 (.1) Potri.004G183300 [exp] 641 / 0 AT5G60620 686 / 0.0 glycerol-3-phosphate acyltransferase 9 (.1) Potri.014G074300 [exp] 59 / 3e-09 AT2G45670 710 / 0.0 calcineurin B subunit-related (.1.2) Potri.002G151800 [exp] 56 / 2e-08 AT2G45670 716 / 0.0 calcineurin B subunit-related (.1.2) Potri.014G042200 [exp] 56 / 3e-08 AT1G80950 506 / 7e-180 Phospholipid/glycerol acyltransferase family protein (.1) Potri.002G134100 [exp] 49 / 4e-06 AT1G80950 476 / 1e-167 Phospholipid/glycerol acyltransferase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0228 [flax] [poplar] Acyltransferase PF01553 [flax] [poplar] Acyltransferase Acyltransferase
Representative CDS sequence Show only first row Show all	>Lus10014443 pacid=23143730 polypeptide=Lus10014443 locus=Lus10014443.g ID=Lus10014443.BGIv1.0 annot-version=v1.0 ATGAGCAATCCAGGGAAGCTGAAATCCTCCAGCTCTGAACTGGACCTGGATCGACCCAACATCGAAGATTACCTCCCTTCTGGATCTTCCATTCACGAAC CCCACGGCAAGCTTCGCCTGCGCGATTTGCTTGACATCTCCCCGACGTTAACAGAGGCTGCTGGCGCAATTATTGATGATTCATTTACGAGGTGTTTCAA GTCAAATCCTCCAGAGCCTTGGAATTGGAATGTGTACCTCTTTCCTCTCTGGTGTTGTGGTGTGGTTGTTAGATATGGTATTCTCTTCCCTGTCAGGGTT TTAGTGCTAACAATCGGGTGGATAGTCTTTCTCTCATCGTACATTCCTGTGCATGTTCTTCTGAAAGGACAAGACAAGTTGAGGAAAAAGATTGAGGTGA TCAATCAATTCTTAATCTCATACTTCAAGCTTCTTTGTGGCATCATGGACTGGAGTGGTCAAGTACCATGGGCCACGTCCGAGCATGCGGCCAAAACAGA TTTCTGCTTGGTATTCTTTGAACAGGTTTTCGTTGCCAATCATACTTCCATGATCGATTTCATCGTTTTGGAACAGATGACTCCATTTGCAGTCATCATG CAGAAGCATCCTGGCTGGGTTGGACTTTTGCAGAGCACCATATTAGAGAGTGTGGGATGTATCTGGTTCAATCGTAGTGAGGCCAAGGATCGCGAAATCG TAGCCAAAAAGTTAAGGAACCATGTTCAGGGGTCTGATAACAACCCTCTTCTCATATTTCCGGAAGGAACTTGTGTAAATAATCACTATACAGTGATGTT CAAGAAGGGCGCCTTTGAACTAGACTCTACTGTTTGCCCAATCGCAATCAAGTACAACAAGATTTTCGTCGATGCCTTTTGGAACAGCAAGAAGCAATCC TTTACAATGCATCTGCTGCAGCTTATGACATCCTGGGCAGTTGTATGTGATGTCTGGTACTTGGAGCCGCAGAATCTTAGACCAGGCGAGACACCTATCG AATTCGCAGAGAGAGTCCGTAGCATAATATCAGTACGAGCTGGCCTCAAGATGGTACCTTGGGATGGATATCTAAAGTACTCTAGACCTAGCCCTAAACA TCGTGAACGAAAGCAACAGAACTTTGCTGAGATCATTCTACAACGGTTAGAGGAGTGCTAA
AA sequence Show only first row Show all	>Lus10014443 pacid=23143730 polypeptide=Lus10014443 locus=Lus10014443.g ID=Lus10014443.BGIv1.0 annot-version=v1.0 MSNPGKLKSSSSELDLDRPNIEDYLPSGSSIHEPHGKLRLRDLLDISPTLTEAAGAIIDDSFTRCFKSNPPEPWNWNVYLFPLWCCGVVVRYGILFPVRV LVLTIGWIVFLSSYIPVHVLLKGQDKLRKKIEVINQFLISYFKLLCGIMDWSGQVPWATSEHAAKTDFCLVFFEQVFVANHTSMIDFIVLEQMTPFAVIM QKHPGWVGLLQSTILESVGCIWFNRSEAKDREIVAKKLRNHVQGSDNNPLLIFPEGTCVNNHYTVMFKKGAFELDSTVCPIAIKYNKIFVDAFWNSKKQS FTMHLLQLMTSWAVVCDVWYLEPQNLRPGETPIEFAERVRSIISVRAGLKMVPWDGYLKYSRPSPKHRERKQQNFAEIILQRLEEC

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G60620		GPAT9	glycerol-3-phosphate acyltrans...		Lus10014443 [exp]	0	1
AT4G17960			unknown protein		Lus10030960 [exp]	1.4	0.8578
AT5G62165	MADS	FYF, AGL42	FOREVER YOUNG FLOWER, AGAMOUS-...		Lus10027404 [exp]	2.0	0.8656
AT1G23380	HD	KNAT6S, KNAT6L,...	KNOTTED1-like homeobox gene 6 ...		Lus10013037 [exp]	4.9	0.8563
AT3G10300			Calcium-binding EF-hand family...		Lus10018041 [exp]	6.5	0.8284
AT2G01060	GARP		myb-like HTH transcriptional r...		Lus10038734 [exp]	7.3	0.8262
AT3G60340			alpha/beta-Hydrolases superfam...		Lus10042902 [exp]	7.6	0.8155
AT5G60620		GPAT9	glycerol-3-phosphate acyltrans...		Lus10023947 [exp]	7.7	0.8538
AT1G21090			Cupredoxin superfamily protein...		Lus10018856 [exp]	7.7	0.8399
AT4G16650			O-fucosyltransferase family pr...		Lus10007792 [exp]	9.2	0.8564
AT1G23780			F-box family protein (.1)		Lus10033762 [exp]	11.2	0.8342

Compare expression of checked genes

Lus10014443 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.